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Fusion gene ID: 7626 |
FusionGeneSummary for CMTM7_RSPO1 |
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Fusion gene information | Fusion gene name: CMTM7_RSPO1 | Fusion gene ID: 7626 | Hgene | Tgene | Gene symbol | CMTM7 | RSPO1 | Gene ID | 112616 | 284654 |
Gene name | CKLF like MARVEL transmembrane domain containing 7 | R-spondin 1 | |
Synonyms | CKLFSF7 | CRISTIN3|RSPO | |
Cytomap | 3p22.3 | 1p34.3 | |
Type of gene | protein-coding | protein-coding | |
Description | CKLF-like MARVEL transmembrane domain-containing protein 7chemokine-like factor super family 7chemokine-like factor super family member 7 variant 2chemokine-like factor superfamily 7chemokine-like factor superfamily member 7 | R-spondin-1R-spondin homologroof plate-specific spondin-1 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q96FZ5 | Q2MKA7 | |
Ensembl transtripts involved in fusion gene | ENST00000334983, ENST00000349718, | ENST00000401070, ENST00000373059, ENST00000401071, ENST00000356545, ENST00000401069, ENST00000401068, | |
Fusion gene scores | * DoF score | 7 X 4 X 5=140 | 1 X 1 X 1=1 |
# samples | 7 | 1 | |
** MAII score | log2(7/140*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: CMTM7 [Title/Abstract] AND RSPO1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | RSPO1 | GO:0001934 | positive regulation of protein phosphorylation | 22615920 |
Tgene | RSPO1 | GO:0002090 | regulation of receptor internalization | 17804805 |
Tgene | RSPO1 | GO:0030177 | positive regulation of Wnt signaling pathway | 22575959 |
Tgene | RSPO1 | GO:0090263 | positive regulation of canonical Wnt signaling pathway | 17804805|22815884 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BQ300150 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000334983 | ENST00000401070 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000334983 | ENST00000373059 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000334983 | ENST00000401071 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000334983 | ENST00000356545 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000334983 | ENST00000401069 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-intron | ENST00000334983 | ENST00000401068 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000349718 | ENST00000401070 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000349718 | ENST00000373059 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000349718 | ENST00000401071 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000349718 | ENST00000356545 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-3UTR | ENST00000349718 | ENST00000401069 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
intron-intron | ENST00000349718 | ENST00000401068 | CMTM7 | chr3 | 32493586 | + | RSPO1 | chr1 | 38077349 | + |
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FusionProtFeatures for CMTM7_RSPO1 |
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Hgene | Tgene |
CMTM7 | RSPO1 |
Activator of the canonical Wnt signaling pathway byacting as a ligand for LGR4-6 receptors. Upon binding to LGR4-6(LGR4, LGR5 or LGR6), LGR4-6 associate with phosphorylated LRP6and frizzled receptors that are activated by extracellular Wntreceptors, triggering the canonical Wnt signaling pathway toincrease expression of target genes. Also regulates the canonicalWnt/beta-catenin-dependent pathway and non-canonical Wnt signalingby acting as an inhibitor of ZNRF3, an important regulator of theWnt signaling pathway. Acts as a ligand for frizzled FZD8 andLRP6. May negatively regulate the TGF-beta pathway. Has aessential roles in ovary determination. Regulates Wnt signaling byantagonizing DKK1/KREM1-mediated internalization of LRP6 throughan interaction with KREM1 (PubMed:17804805).{ECO:0000269|PubMed:16109882, ECO:0000269|PubMed:17804805,ECO:0000269|PubMed:21727895, ECO:0000269|PubMed:21909076,ECO:0000269|PubMed:22575959, ECO:0000269|PubMed:22615920,ECO:0000269|PubMed:22815884, ECO:0000269|PubMed:23756652,ECO:0000269|PubMed:23809763}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CMTM7_RSPO1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CMTM7_RSPO1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CMTM7_RSPO1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CMTM7_RSPO1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | RSPO1 | C0677886 | Epithelial ovarian cancer | 1 | CTD_human |