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Fusion gene ID: 7621 |
FusionGeneSummary for CMTM7_CMTM8 |
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Fusion gene information | Fusion gene name: CMTM7_CMTM8 | Fusion gene ID: 7621 | Hgene | Tgene | Gene symbol | CMTM7 | CMTM8 | Gene ID | 112616 | 152189 |
Gene name | CKLF like MARVEL transmembrane domain containing 7 | CKLF like MARVEL transmembrane domain containing 8 | |
Synonyms | CKLFSF7 | CKLFSF8|CKLFSF8-V2 | |
Cytomap | 3p22.3 | 3p22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | CKLF-like MARVEL transmembrane domain-containing protein 7chemokine-like factor super family 7chemokine-like factor super family member 7 variant 2chemokine-like factor superfamily 7chemokine-like factor superfamily member 7 | CKLF-like MARVEL transmembrane domain-containing protein 8chemokine-like factor superfamily member 8 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q96FZ5 | Q8IZV2 | |
Ensembl transtripts involved in fusion gene | ENST00000334983, ENST00000349718, | ENST00000458535, ENST00000307526, | |
Fusion gene scores | * DoF score | 7 X 4 X 5=140 | 2 X 1 X 2=4 |
# samples | 7 | 2 | |
** MAII score | log2(7/140*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: CMTM7 [Title/Abstract] AND CMTM8 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-XF-A9SK-01A | CMTM7 | chr3 | 32433557 | + | CMTM8 | chr3 | 32409364 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000334983 | ENST00000458535 | CMTM7 | chr3 | 32433557 | + | CMTM8 | chr3 | 32409364 | + |
In-frame | ENST00000334983 | ENST00000307526 | CMTM7 | chr3 | 32433557 | + | CMTM8 | chr3 | 32409364 | + |
In-frame | ENST00000349718 | ENST00000458535 | CMTM7 | chr3 | 32433557 | + | CMTM8 | chr3 | 32409364 | + |
In-frame | ENST00000349718 | ENST00000307526 | CMTM7 | chr3 | 32433557 | + | CMTM8 | chr3 | 32409364 | + |
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FusionProtFeatures for CMTM7_CMTM8 |
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Hgene | Tgene |
CMTM7 | CMTM8 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000307526 | + | 1 | 4 | 105_125 | 107 | 174 | Transmembrane | Helical |
Tgene | >CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000307526 | + | 1 | 4 | 147_167 | 107 | 174 | Transmembrane | Helical |
Tgene | >CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000458535 | + | 0 | 3 | 105_125 | 49 | 116 | Transmembrane | Helical |
Tgene | >CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000458535 | + | 0 | 3 | 147_167 | 49 | 116 | Transmembrane | Helical |
Tgene | >CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000458535 | + | 0 | 3 | 70_90 | 49 | 116 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000334983 | + | 1 | 5 | 40_166 | 53 | 176 | Domain | MARVEL |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000349718 | + | 1 | 4 | 40_166 | 53 | 143 | Domain | MARVEL |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000334983 | + | 1 | 5 | 110_130 | 53 | 176 | Transmembrane | Helical |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000334983 | + | 1 | 5 | 140_160 | 53 | 176 | Transmembrane | Helical |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000334983 | + | 1 | 5 | 43_63 | 53 | 176 | Transmembrane | Helical |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000334983 | + | 1 | 5 | 77_97 | 53 | 176 | Transmembrane | Helical |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000349718 | + | 1 | 4 | 110_130 | 53 | 143 | Transmembrane | Helical |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000349718 | + | 1 | 4 | 140_160 | 53 | 143 | Transmembrane | Helical |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000349718 | + | 1 | 4 | 43_63 | 53 | 143 | Transmembrane | Helical |
Hgene | >CMTM7 | chr3:32433557 | chr3:32409364 | ENST00000349718 | + | 1 | 4 | 77_97 | 53 | 143 | Transmembrane | Helical |
Tgene | CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000307526 | + | 1 | 4 | 36_168 | 107 | 174 | Domain | MARVEL |
Tgene | CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000458535 | + | 0 | 3 | 36_168 | 49 | 116 | Domain | MARVEL |
Tgene | CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000307526 | + | 1 | 4 | 40_60 | 107 | 174 | Transmembrane | Helical |
Tgene | CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000307526 | + | 1 | 4 | 70_90 | 107 | 174 | Transmembrane | Helical |
Tgene | CMTM8 | chr3:32433557 | chr3:32409364 | ENST00000458535 | + | 0 | 3 | 40_60 | 49 | 116 | Transmembrane | Helical |
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FusionGeneSequence for CMTM7_CMTM8 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CMTM7_CMTM8 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CMTM7 | LMNA | CMTM8 | TRIM25 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CMTM7_CMTM8 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CMTM7_CMTM8 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |