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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 7169

FusionGeneSummary for CHRNA7_PRR16

check button Fusion gene summary
Fusion gene informationFusion gene name: CHRNA7_PRR16
Fusion gene ID: 7169
HgeneTgene
Gene symbol

CHRNA7

PRR16

Gene ID

89832

51334

Gene nameCHRNA7 (exons 5-10) and FAM7A (exons A-E) fusionproline rich 16
SynonymsCHRNA7|CHRNA7-DR1|D-10DSC54|LARGEN
Cytomap

15q13.2

5q23.1

Type of geneprotein-codingprotein-coding
DescriptionCHRNA7-FAM7A fusion proteinCHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusionCHRNA7 (cholinergic receptor, nicotinic, alpha polypeptide 7, exons 5-10) and FAM7A (family with seqprotein Largenmesenchymal stem cell protein DSC54proline-rich protein 16
Modification date2018052320180519
UniProtAcc

P36544

Q569H4

Ensembl transtripts involved in fusion geneENST00000454250, ENST00000306901, 
ENST00000455693, 
ENST00000407149, 
ENST00000379551, ENST00000505123, 
ENST00000446965, 
Fusion gene scores* DoF score1 X 1 X 1=14 X 2 X 4=32
# samples 14
** MAII scorelog2(1/1*10)=3.32192809488736log2(4/32*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: CHRNA7 [Title/Abstract] AND PRR16 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePRR16

GO:0045727

positive regulation of translation

24656129

TgenePRR16

GO:0045793

positive regulation of cell size

24656129


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDSTADTCGA-VQ-A8E0-01ACHRNA7chr15

32323240

+PRR16chr5

120021649

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000454250ENST00000407149CHRNA7chr15

32323240

+PRR16chr5

120021649

+
Frame-shiftENST00000454250ENST00000379551CHRNA7chr15

32323240

+PRR16chr5

120021649

+
5CDS-5UTRENST00000454250ENST00000505123CHRNA7chr15

32323240

+PRR16chr5

120021649

+
5CDS-5UTRENST00000454250ENST00000446965CHRNA7chr15

32323240

+PRR16chr5

120021649

+
Frame-shiftENST00000306901ENST00000407149CHRNA7chr15

32323240

+PRR16chr5

120021649

+
Frame-shiftENST00000306901ENST00000379551CHRNA7chr15

32323240

+PRR16chr5

120021649

+
5CDS-5UTRENST00000306901ENST00000505123CHRNA7chr15

32323240

+PRR16chr5

120021649

+
5CDS-5UTRENST00000306901ENST00000446965CHRNA7chr15

32323240

+PRR16chr5

120021649

+
5UTR-3CDSENST00000455693ENST00000407149CHRNA7chr15

32323240

+PRR16chr5

120021649

+
5UTR-3CDSENST00000455693ENST00000379551CHRNA7chr15

32323240

+PRR16chr5

120021649

+
5UTR-5UTRENST00000455693ENST00000505123CHRNA7chr15

32323240

+PRR16chr5

120021649

+
5UTR-5UTRENST00000455693ENST00000446965CHRNA7chr15

32323240

+PRR16chr5

120021649

+

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FusionProtFeatures for CHRNA7_PRR16


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CHRNA7

P36544

PRR16

Q569H4

After binding acetylcholine, the AChR responds by anextensive change in conformation that affects all subunits andleads to opening of an ion-conducting channel across the plasmamembrane. The channel is blocked by alpha-bungarotoxin. Regulator of cell size that promotes cell size increaseindependently of mTOR and Hippo signaling pathways. Acts bystimulating the translation of specific mRNAs, including thoseencoding proteins affecting mitochondrial functions. Increasesmitochondrial mass and respiration. {ECO:0000269|PubMed:24656129}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CHRNA7_PRR16


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CHRNA7_PRR16


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
CHRNA7ADCY6, FYN, ATXN1PRR16NEDD4, NEDD4L, PPP1CA, APP, PPP1CC, ABI2, SMURF1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CHRNA7_PRR16


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneCHRNA7P36544DB00184NicotineNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB00514DextromethorphanNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB00674GalantamineNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB00849MethylphenobarbitalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB00898EthanolNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB01199TubocurarineNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB01354HeptabarbitalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB01355HexobarbitalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB03128AcetylcholineNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved
HgeneCHRNA7P36544DB00306TalbutalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|illicit
HgeneCHRNA7P36544DB01351AmobarbitalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|illicit
HgeneCHRNA7P36544DB01352AprobarbitalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|illicit
HgeneCHRNA7P36544DB01353ButethalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|illicit
HgeneCHRNA7P36544DB00657MecamylamineNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|investigational
HgeneCHRNA7P36544DB01174PhenobarbitalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|investigational
HgeneCHRNA7P36544DB01273VareniclineNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|investigational
HgeneCHRNA7P36544DB00312PentobarbitalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|investigational|vet_approved
HgeneCHRNA7P36544DB00122CholineNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|nutraceutical
HgeneCHRNA7P36544DB00418SecobarbitalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|vet_approved
HgeneCHRNA7P36544DB00599ThiopentalNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|vet_approved
HgeneCHRNA7P36544DB00794PrimidoneNeuronal acetylcholine receptor subunit alpha-7small moleculeapproved|vet_approved

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RelatedDiseases for CHRNA7_PRR16


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCHRNA7C0005586Bipolar Disorder5PSYGENET
HgeneCHRNA7C0036572Seizures5CTD_human
HgeneCHRNA7C0036341Schizophrenia4PSYGENET
HgeneCHRNA7C0002395Alzheimer's Disease1CTD_human
HgeneCHRNA7C0004310Auditory Perceptual Disorders1CTD_human
HgeneCHRNA7C0004352Autistic Disorder1CTD_human
HgeneCHRNA7C0014548Epilepsy, Generalized1CTD_human
HgeneCHRNA7C0024121Lung Neoplasms1CTD_human
HgeneCHRNA7C0025261Memory Disorders1CTD_human
HgeneCHRNA7C0027626Neoplasm Invasiveness1CTD_human
HgeneCHRNA7C0027746Nerve Degeneration1CTD_human
HgeneCHRNA7C0037917Spina Bifida Cystica1CTD_human
HgeneCHRNA7C0038587Substance Withdrawal Syndrome1CTD_human
HgeneCHRNA7C0038644Sudden infant death syndrome1CTD_human
HgeneCHRNA7C0040336Tobacco Use Disorder1CTD_human
HgeneCHRNA7C0525041Neurobehavioral Manifestations1CTD_human
HgeneCHRNA7C1306503Congenital exomphalos1CTD_human