![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 7169 |
FusionGeneSummary for CHRNA7_PRR16 |
![]() |
Fusion gene information | Fusion gene name: CHRNA7_PRR16 | Fusion gene ID: 7169 | Hgene | Tgene | Gene symbol | CHRNA7 | PRR16 | Gene ID | 89832 | 51334 |
Gene name | CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion | proline rich 16 | |
Synonyms | CHRNA7|CHRNA7-DR1|D-10 | DSC54|LARGEN | |
Cytomap | 15q13.2 | 5q23.1 | |
Type of gene | protein-coding | protein-coding | |
Description | CHRNA7-FAM7A fusion proteinCHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusionCHRNA7 (cholinergic receptor, nicotinic, alpha polypeptide 7, exons 5-10) and FAM7A (family with seq | protein Largenmesenchymal stem cell protein DSC54proline-rich protein 16 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | P36544 | Q569H4 | |
Ensembl transtripts involved in fusion gene | ENST00000454250, ENST00000306901, ENST00000455693, | ENST00000407149, ENST00000379551, ENST00000505123, ENST00000446965, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 4 X 2 X 4=32 |
# samples | 1 | 4 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CHRNA7 [Title/Abstract] AND PRR16 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PRR16 | GO:0045727 | positive regulation of translation | 24656129 |
Tgene | PRR16 | GO:0045793 | positive regulation of cell size | 24656129 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | STAD | TCGA-VQ-A8E0-01A | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000454250 | ENST00000407149 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
Frame-shift | ENST00000454250 | ENST00000379551 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000454250 | ENST00000505123 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000454250 | ENST00000446965 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
Frame-shift | ENST00000306901 | ENST00000407149 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
Frame-shift | ENST00000306901 | ENST00000379551 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000306901 | ENST00000505123 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000306901 | ENST00000446965 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
5UTR-3CDS | ENST00000455693 | ENST00000407149 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
5UTR-3CDS | ENST00000455693 | ENST00000379551 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
5UTR-5UTR | ENST00000455693 | ENST00000505123 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
5UTR-5UTR | ENST00000455693 | ENST00000446965 | CHRNA7 | chr15 | 32323240 | + | PRR16 | chr5 | 120021649 | + |
Top |
FusionProtFeatures for CHRNA7_PRR16 |
![]() |
Hgene | Tgene |
CHRNA7 | PRR16 |
After binding acetylcholine, the AChR responds by anextensive change in conformation that affects all subunits andleads to opening of an ion-conducting channel across the plasmamembrane. The channel is blocked by alpha-bungarotoxin. | Regulator of cell size that promotes cell size increaseindependently of mTOR and Hippo signaling pathways. Acts bystimulating the translation of specific mRNAs, including thoseencoding proteins affecting mitochondrial functions. Increasesmitochondrial mass and respiration. {ECO:0000269|PubMed:24656129}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for CHRNA7_PRR16 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for CHRNA7_PRR16 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CHRNA7 | ADCY6, FYN, ATXN1 | PRR16 | NEDD4, NEDD4L, PPP1CA, APP, PPP1CC, ABI2, SMURF1 |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for CHRNA7_PRR16 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | CHRNA7 | P36544 | DB00184 | Nicotine | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB00514 | Dextromethorphan | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB00674 | Galantamine | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB00849 | Methylphenobarbital | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB00898 | Ethanol | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB01199 | Tubocurarine | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB01354 | Heptabarbital | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB01355 | Hexobarbital | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB03128 | Acetylcholine | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved |
Hgene | CHRNA7 | P36544 | DB00306 | Talbutal | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|illicit |
Hgene | CHRNA7 | P36544 | DB01351 | Amobarbital | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|illicit |
Hgene | CHRNA7 | P36544 | DB01352 | Aprobarbital | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|illicit |
Hgene | CHRNA7 | P36544 | DB01353 | Butethal | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|illicit |
Hgene | CHRNA7 | P36544 | DB00657 | Mecamylamine | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|investigational |
Hgene | CHRNA7 | P36544 | DB01174 | Phenobarbital | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|investigational |
Hgene | CHRNA7 | P36544 | DB01273 | Varenicline | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|investigational |
Hgene | CHRNA7 | P36544 | DB00312 | Pentobarbital | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|investigational|vet_approved |
Hgene | CHRNA7 | P36544 | DB00122 | Choline | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|nutraceutical |
Hgene | CHRNA7 | P36544 | DB00418 | Secobarbital | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|vet_approved |
Hgene | CHRNA7 | P36544 | DB00599 | Thiopental | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|vet_approved |
Hgene | CHRNA7 | P36544 | DB00794 | Primidone | Neuronal acetylcholine receptor subunit alpha-7 | small molecule | approved|vet_approved |
Top |
RelatedDiseases for CHRNA7_PRR16 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CHRNA7 | C0005586 | Bipolar Disorder | 5 | PSYGENET |
Hgene | CHRNA7 | C0036572 | Seizures | 5 | CTD_human |
Hgene | CHRNA7 | C0036341 | Schizophrenia | 4 | PSYGENET |
Hgene | CHRNA7 | C0002395 | Alzheimer's Disease | 1 | CTD_human |
Hgene | CHRNA7 | C0004310 | Auditory Perceptual Disorders | 1 | CTD_human |
Hgene | CHRNA7 | C0004352 | Autistic Disorder | 1 | CTD_human |
Hgene | CHRNA7 | C0014548 | Epilepsy, Generalized | 1 | CTD_human |
Hgene | CHRNA7 | C0024121 | Lung Neoplasms | 1 | CTD_human |
Hgene | CHRNA7 | C0025261 | Memory Disorders | 1 | CTD_human |
Hgene | CHRNA7 | C0027626 | Neoplasm Invasiveness | 1 | CTD_human |
Hgene | CHRNA7 | C0027746 | Nerve Degeneration | 1 | CTD_human |
Hgene | CHRNA7 | C0037917 | Spina Bifida Cystica | 1 | CTD_human |
Hgene | CHRNA7 | C0038587 | Substance Withdrawal Syndrome | 1 | CTD_human |
Hgene | CHRNA7 | C0038644 | Sudden infant death syndrome | 1 | CTD_human |
Hgene | CHRNA7 | C0040336 | Tobacco Use Disorder | 1 | CTD_human |
Hgene | CHRNA7 | C0525041 | Neurobehavioral Manifestations | 1 | CTD_human |
Hgene | CHRNA7 | C1306503 | Congenital exomphalos | 1 | CTD_human |