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Fusion gene ID: 7143 |
FusionGeneSummary for CHP1_ARHGAP42 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CHP1_ARHGAP42 | Fusion gene ID: 7143 | Hgene | Tgene | Gene symbol | CHP1 | ARHGAP42 | Gene ID | 26973 | 143872 |
| Gene name | cysteine and histidine rich domain containing 1 | Rho GTPase activating protein 42 | |
| Synonyms | CHP1 | AD031|GRAF3|TMEM133 | |
| Cytomap | 11q14.3 | 11q22.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | cysteine and histidine-rich domain-containing protein 1CHORD-containing protein 1CHP-1chord domain-containing protein 1cysteine and histidine-rich domain (CHORD) containing 1cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein | rho GTPase-activating protein 42rho-type GTPase-activating protein 42transmembrane protein 133 | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q99653 | A6NI28 | |
| Ensembl transtripts involved in fusion gene | ENST00000558351, ENST00000334660, ENST00000560397, | ENST00000524892, ENST00000298815, ENST00000534060, | |
| Fusion gene scores | * DoF score | 6 X 7 X 4=168 | 3 X 3 X 3=27 |
| # samples | 7 | 3 | |
| ** MAII score | log2(7/168*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: CHP1 [Title/Abstract] AND ARHGAP42 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | ARHGAP42 | GO:0090630 | activation of GTPase activity | 24335996 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | UCEC | TCGA-AJ-A3I9-01A | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000558351 | ENST00000524892 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| intron-3CDS | ENST00000558351 | ENST00000298815 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| intron-intron | ENST00000558351 | ENST00000534060 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| In-frame | ENST00000334660 | ENST00000524892 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| In-frame | ENST00000334660 | ENST00000298815 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| 5CDS-intron | ENST00000334660 | ENST00000534060 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| In-frame | ENST00000560397 | ENST00000524892 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| In-frame | ENST00000560397 | ENST00000298815 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
| 5CDS-intron | ENST00000560397 | ENST00000534060 | CHP1 | chr15 | 41523647 | + | ARHGAP42 | chr11 | 100830614 | + |
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FusionProtFeatures for CHP1_ARHGAP42 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CHP1 | ARHGAP42 |
| Calcium-binding protein involved in different processessuch as regulation of vesicular trafficking, plasma membraneNa(+)/H(+) exchanger and gene transcription. Involved in theconstitutive exocytic membrane traffic. Mediates the associationbetween microtubules and membrane-bound organelles of theendoplasmic reticulum and Golgi apparatus and is also required forthe targeting and fusion of transcytotic vesicles (TCV) with theplasma membrane. Functions as an integral cofactor in cell pHregulation by controlling plasma membrane-type Na(+)/H(+) exchangeactivity. Affects the pH sensitivity of SLC9A1/NHE1 by increasingits sensitivity at acidic pH. Required for the stabilization andlocalization of SLC9A1/NHE1 at the plasma membrane. Inhibitsserum- and GTPase-stimulated Na(+)/H(+) exchange. Plays a role asan inhibitor of ribosomal RNA transcription by repressing thenucleolar UBF1 transcriptional activity. May sequester UBF1 in thenucleoplasm and limit its translocation to the nucleolus.Associates to the ribosomal gene promoter. Acts as a negativeregulator of the calcineurin/NFAT signaling pathway. Inhibits NFATnuclear translocation and transcriptional activity by suppressingthe calcium-dependent calcineurin phosphatase activity. Alsonegatively regulates the kinase activity of the apoptosis-inducedkinase STK17B. Inhibits both STK17B auto- and substrate-phosphorylations in a calcium-dependent manner.{ECO:0000269|PubMed:10593895, ECO:0000269|PubMed:11350981,ECO:0000269|PubMed:15035633, ECO:0000269|PubMed:8901634}. | May influence blood pressure by functioning as a GTPase-activating protein for RHOA in vascular smooth muscle.{ECO:0000269|PubMed:24335996}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CHP1_ARHGAP42 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_CHP1_ENST00000334660_chr15_41523647_+_ARHGAP42_ENST00000524892_chr11_100830614_+_510aa MGSRASTLLRDEELEEIKKETGLYLNEAGFNFVRKCIQAVETRGITILGLYRIGGVNSKVQKLMNTTFSPKSPPDIDIDIELWDNKTITS GLKNYLRCLAEPLMTYKLHKDFIIAVKSDDQNYRVEAVHALVHKLPEKNREMLDILIKHLVKVSLHSQQNLMTVSNLGVIFGPTLMRAQE ETVAAMMNIKFQNIVVEILIEHYEKIFHTAPDPSIPLPQPQSRSGSRRTRAICLSTGSRKPRGRYTPCLAEPDSDSYSSSPDSTPMGSIE SLSSHSSEQNSTTKSASCQPREKSGGIPWIATPSSSNGQKSLGLWTTSPESSSREDATKTDAESDCQSVASVTSPGDVSPPIDLVKKEPY GLSGLKRASASSLRSISAAEGNKSYSGSIQSLTSVGSKETPKASPNPDLPPKMCRRLRLDTASSNGYQRPGSVVAAKAQLFENVGSPKPV >In-frame_CHP1_ENST00000334660_chr15_41523647_+_ARHGAP42_ENST00000298815_chr11_100830614_+_510aa MGSRASTLLRDEELEEIKKETGLYLNEAGFNFVRKCIQAVETRGITILGLYRIGGVNSKVQKLMNTTFSPKSPPDIDIDIELWDNKTITS GLKNYLRCLAEPLMTYKLHKDFIIAVKSDDQNYRVEAVHALVHKLPEKNREMLDILIKHLVKVSLHSQQNLMTVSNLGVIFGPTLMRAQE ETVAAMMNIKFQNIVVEILIEHYEKIFHTAPDPSIPLPQPQSRSGSRRTRAICLSTGSRKPRGRYTPCLAEPDSDSYSSSPDSTPMGSIE SLSSHSSEQNSTTKSASCQPREKSGGIPWIATPSSSNGQKSLGLWTTSPESSSREDATKTDAESDCQSVASVTSPGDVSPPIDLVKKEPY GLSGLKRASASSLRSISAAEGNKSYSGSIQSLTSVGSKETPKASPNPDLPPKMCRRLRLDTASSNGYQRPGSVVAAKAQLFENVGSPKPV >In-frame_CHP1_ENST00000560397_chr15_41523647_+_ARHGAP42_ENST00000524892_chr11_100830614_+_510aa MGSRASTLLRDEELEEIKKETGLYLNEAGFNFVRKCIQAVETRGITILGLYRIGGVNSKVQKLMNTTFSPKSPPDIDIDIELWDNKTITS GLKNYLRCLAEPLMTYKLHKDFIIAVKSDDQNYRVEAVHALVHKLPEKNREMLDILIKHLVKVSLHSQQNLMTVSNLGVIFGPTLMRAQE ETVAAMMNIKFQNIVVEILIEHYEKIFHTAPDPSIPLPQPQSRSGSRRTRAICLSTGSRKPRGRYTPCLAEPDSDSYSSSPDSTPMGSIE SLSSHSSEQNSTTKSASCQPREKSGGIPWIATPSSSNGQKSLGLWTTSPESSSREDATKTDAESDCQSVASVTSPGDVSPPIDLVKKEPY GLSGLKRASASSLRSISAAEGNKSYSGSIQSLTSVGSKETPKASPNPDLPPKMCRRLRLDTASSNGYQRPGSVVAAKAQLFENVGSPKPV >In-frame_CHP1_ENST00000560397_chr15_41523647_+_ARHGAP42_ENST00000298815_chr11_100830614_+_510aa MGSRASTLLRDEELEEIKKETGLYLNEAGFNFVRKCIQAVETRGITILGLYRIGGVNSKVQKLMNTTFSPKSPPDIDIDIELWDNKTITS GLKNYLRCLAEPLMTYKLHKDFIIAVKSDDQNYRVEAVHALVHKLPEKNREMLDILIKHLVKVSLHSQQNLMTVSNLGVIFGPTLMRAQE ETVAAMMNIKFQNIVVEILIEHYEKIFHTAPDPSIPLPQPQSRSGSRRTRAICLSTGSRKPRGRYTPCLAEPDSDSYSSSPDSTPMGSIE SLSSHSSEQNSTTKSASCQPREKSGGIPWIATPSSSNGQKSLGLWTTSPESSSREDATKTDAESDCQSVASVTSPGDVSPPIDLVKKEPY GLSGLKRASASSLRSISAAEGNKSYSGSIQSLTSVGSKETPKASPNPDLPPKMCRRLRLDTASSNGYQRPGSVVAAKAQLFENVGSPKPV |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_CHP1_ENST00000334660_chr15_41523647_+_ARHGAP42_ENST00000524892_chr11_100830614_+_1530nt ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTGTATTTGAATGAAGCAGGGTTC AACTTTGTGAGAAAATGCATTCAAGCTGTGGAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTT CAAAAACTCATGAATACCACATTTTCTCCTAAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAACAAGT GGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCTGTTAAATCTGATGAT CAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAGCATCTG GTCAAAGTATCACTACACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAGGAA GAAACTGTGGCTGCTATGATGAATATTAAATTTCAGAATATTGTGGTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCT CCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTGCCTCTCTACAGGGTCTAGGAAG CCCAGAGGGAGGTATACTCCATGCCTGGCCGAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAG TCACTCTCTTCTCATTCCTCTGAACAAAATAGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATT GCAACCCCATCATCTTCCAATGGACAGAAAAGCCTTGGTCTGTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCAACCAAGACA GATGCAGAATCAGACTGCCAGAGTGTTGCTTCAGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTCAAGAAAGAGCCTTAT GGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAACAAGAGCTACAGTGGATCTATTCAA AGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCTTCACCAAACCCAGACCTGCCTCCGAAAATGTGCAGGAGATTAAGACTAGAC ACTGCCTCAAGCAATGGCTATCAGCGGCCTGGCTCAGTAGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTT TCTTCTGGGCGCCAAGCCAAAGCCATGTACTCCTGTAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCAATATTTTCTAAT GTGTACCCATCAGTGGAACCAGGATGGTTAAAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAA >In-frame_CHP1_ENST00000334660_chr15_41523647_+_ARHGAP42_ENST00000298815_chr11_100830614_+_1530nt ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTGTATTTGAATGAAGCAGGGTTC AACTTTGTGAGAAAATGCATTCAAGCTGTGGAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTT CAAAAACTCATGAATACCACATTTTCTCCTAAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAACAAGT GGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCTGTTAAATCTGATGAT CAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAGCATCTG GTCAAAGTATCACTACACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAGGAA GAAACTGTGGCTGCTATGATGAATATTAAATTTCAGAATATTGTGGTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCT CCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTGCCTCTCTACAGGGTCTAGGAAG CCCAGAGGGAGGTATACTCCATGCCTGGCCGAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAG TCACTCTCTTCTCATTCCTCTGAACAAAATAGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATT GCAACCCCATCATCTTCCAATGGACAGAAAAGCCTTGGTCTGTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCAACCAAGACA GATGCAGAATCAGACTGCCAGAGTGTTGCTTCAGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTCAAGAAAGAGCCTTAT GGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAACAAGAGCTACAGTGGATCTATTCAA AGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCTTCACCAAACCCAGACCTGCCTCCGAAAATGTGCAGGAGATTAAGACTAGAC ACTGCCTCAAGCAATGGCTATCAGCGGCCTGGCTCAGTAGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTT TCTTCTGGGCGCCAAGCCAAAGCCATGTACTCCTGTAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCAATATTTTCTAAT GTGTACCCATCAGTGGAACCAGGATGGTTAAAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAA >In-frame_CHP1_ENST00000560397_chr15_41523647_+_ARHGAP42_ENST00000524892_chr11_100830614_+_1530nt ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTGTATTTGAATGAAGCAGGGTTC AACTTTGTGAGAAAATGCATTCAAGCTGTGGAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTT CAAAAACTCATGAATACCACATTTTCTCCTAAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAACAAGT GGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCTGTTAAATCTGATGAT CAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAGCATCTG GTCAAAGTATCACTACACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAGGAA GAAACTGTGGCTGCTATGATGAATATTAAATTTCAGAATATTGTGGTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCT CCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTGCCTCTCTACAGGGTCTAGGAAG CCCAGAGGGAGGTATACTCCATGCCTGGCCGAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAG TCACTCTCTTCTCATTCCTCTGAACAAAATAGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATT GCAACCCCATCATCTTCCAATGGACAGAAAAGCCTTGGTCTGTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCAACCAAGACA GATGCAGAATCAGACTGCCAGAGTGTTGCTTCAGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTCAAGAAAGAGCCTTAT GGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAACAAGAGCTACAGTGGATCTATTCAA AGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCTTCACCAAACCCAGACCTGCCTCCGAAAATGTGCAGGAGATTAAGACTAGAC ACTGCCTCAAGCAATGGCTATCAGCGGCCTGGCTCAGTAGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTT TCTTCTGGGCGCCAAGCCAAAGCCATGTACTCCTGTAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCAATATTTTCTAAT GTGTACCCATCAGTGGAACCAGGATGGTTAAAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAA >In-frame_CHP1_ENST00000560397_chr15_41523647_+_ARHGAP42_ENST00000298815_chr11_100830614_+_1530nt ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTGTATTTGAATGAAGCAGGGTTC AACTTTGTGAGAAAATGCATTCAAGCTGTGGAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTT CAAAAACTCATGAATACCACATTTTCTCCTAAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAACAAGT GGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCTGTTAAATCTGATGAT CAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAGCATCTG GTCAAAGTATCACTACACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAGGAA GAAACTGTGGCTGCTATGATGAATATTAAATTTCAGAATATTGTGGTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCT CCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTGCCTCTCTACAGGGTCTAGGAAG CCCAGAGGGAGGTATACTCCATGCCTGGCCGAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAG TCACTCTCTTCTCATTCCTCTGAACAAAATAGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATT GCAACCCCATCATCTTCCAATGGACAGAAAAGCCTTGGTCTGTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCAACCAAGACA GATGCAGAATCAGACTGCCAGAGTGTTGCTTCAGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTCAAGAAAGAGCCTTAT GGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAACAAGAGCTACAGTGGATCTATTCAA AGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCTTCACCAAACCCAGACCTGCCTCCGAAAATGTGCAGGAGATTAAGACTAGAC ACTGCCTCAAGCAATGGCTATCAGCGGCCTGGCTCAGTAGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTT TCTTCTGGGCGCCAAGCCAAAGCCATGTACTCCTGTAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCAATATTTTCTAAT GTGTACCCATCAGTGGAACCAGGATGGTTAAAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_CHP1_ENST00000334660_chr15_41523647_+_ARHGAP42_ENST00000524892_chr11_100830614_+_4906nt CATTCGGGGCTGGAACTCGAACGCTGACGTTGGCTCCTGAGCCGGGCGCTGCCTCGCGCCTGATTGGCGGGTCCTCGGGGCCGCCCTCCC CAGCGCACCACCCCTGGGTTCCCTCCCGGGTCCGCAGTGGAAACACTGCCCTCTCCCTTCTTGACCCCTAGCCCTTCCTTCCCTCCCTCC TTCCCTCCTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCGATGGGTTCTCGGGCCTCCACGTTACTGCGG GACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTGTATTTGAATGAAGCAGGGTTCAACTTTGTGAGAAAATGCATTCAAGCTGTG GAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTTCAAAAACTCATGAATACCACATTTTCTCCT AAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAACAAGTGGGCTGAAAAACTACCTCAGGTGCCTTGCA GAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCTGTTAAATCTGATGATCAAAACTACAGGGTGGAGGCTGTACATGCA TTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAGCATCTGGTCAAAGTATCACTACACAGCCAACAAAAT CTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAGGAAGAAACTGTGGCTGCTATGATGAATATTAAA TTTCAGAATATTGTGGTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCTCCAGACCCAAGCATTCCTCTTCCTCAGCCT CAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTGCCTCTCTACAGGGTCTAGGAAGCCCAGAGGGAGGTATACTCCATGCCTGGCC GAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAGTCACTCTCTTCTCATTCCTCTGAACAAAAT AGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATTGCAACCCCATCATCTTCCAATGGACAGAAA AGCCTTGGTCTGTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCAACCAAGACAGATGCAGAATCAGACTGCCAGAGTGTTGCT TCAGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTCAAGAAAGAGCCTTATGGGCTTTCAGGACTGAAAAGAGCTTCTGCT TCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAACAAGAGCTACAGTGGATCTATTCAAAGCTTAACTTCTGTAGGTTCCAAGGAGACA CCCAAAGCTTCACCAAACCCAGACCTGCCTCCGAAAATGTGCAGGAGATTAAGACTAGACACTGCCTCAAGCAATGGCTATCAGCGGCCT GGCTCAGTAGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTTTCTTCTGGGCGCCAAGCCAAAGCCATGTAC TCCTGTAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCAATATTTTCTAATGTGTACCCATCAGTGGAACCAGGATGGTTA AAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAATACTATTTAGTGGATGGCAGTATCTTCATG GTATCCATGGTAACGAATAAATGCTATGATTTTATCTGACACAGATACACGGGGATCAGCCCACTAAGTGAAAACAGTCAATTTCTATCA AGTTCTTCACCAGCAGACTATGTAGCTCCTTATTAATGGAAAAAAAGATTTAAATTGTTGGCCATTCTTTTTTGGTTGGTTTCTTATTTT AAAATATCTTACTTGTGAAAAATGTGTTTTTGGATAATATGTAACTCTCCACAATGTCGCTTCCGTAGCAATTGTAGAGTTTCAAATACT GTGTTAAATACTGTATCCCAGAAATTTGGAAACCAGAAATCTGCTATATGGATTTTGAGATCTGTCCTTTACTGCCTGGCATTCTCTGAG GATCTCTGAAATTGTTACTTAAAAATGTAATTTAAATTGTTCATTTATTGTTTTTTTTTTCTTAGAAATATACTGCTTTTATATATGATT GTTTTGCTGGTCCTAAACATTTCAAGGATGTAAGTCTTTGTTTTAATATAACTTTATTTGTTTTCCAAGTAGATGATAATATTCAAAAGC AATAATGTATATGATATCTATAAAGGAAGCAAAATTAAGTCATACACTGATTCCACTGTAAACAATCTGTCCAGAATTCCAGACACCTTC AGCAAACTTTTTCTGTAAAGGCCTGATAGCAAATATTTTTGTGGTGGGTTGAATTTGGCTTATGGGTTATAGTTTGCTGACACCTAGTTT AGAGGGTGTGTAAAACTATCTTCATAACTTTGAGATTTTTATAAAATTTTACATGAAAATATACTGATAAATTATATGCACATATTTTCT ACCAGTAGCATTATAGTGGCATCATAGAAGAATATTTACCAATGATGGGGAAACTGTAAAACTACAGTATCAAGGCATACAACTTAAATT CCACTTGGAAGATTGTAAAGTGTCAAAGTATTTTAATGATAATTTAATTTGGGCTTTTGAAATGTTCTTCTACAAATGAAAAAGATGTTT AAAAACGTTACAAGGGAAGCTATGCCTTCTGAAGTCTATCCTTAGTTGAAACAGAAAATAAACACAAAGGTACAAGATCCTTAAATTATT TTGAACCACAGAGGTTGAAATTGTTTTGTGATCTTCAGCAGAAATAAAATCTGTACATGATTTTCTTTTATGCCTTTTAGTTTACAGTCT TTATTAGCAATTTCAGTGAATTTGTAGAGCATAGTAATAGGTATTTACTGTCCACTTATATATATCAGCATCTGGTCATGCACGAACCAT TAATTCTATATTTCTATTTCAATAATTCTAATATATTATTTCTATAAATGTAATATCTGTATGTGGCAAAGAGCCTTTCTTCTCAAGATC CTGAAAAGCTGGTTACCTGCCCTTTGAGTGCCACAGTCCTGAACTGCTTGTTCTTGACATCTTGCATATTACTTCAGAGTTCCCCACTGT GCAGACTCTCAGGTATTAACTGTAAAAAACTCTTTACATGCCATTATTATCTGTAATCTCTATCTCTTCTACTTTAAATTAATGTTTCTA GAATTAATAGGTTAAATACACATACACACACACAACTATGCCTCAGAAAAGTTAGGCTTTTACAAATAAAAAGAATAAGATTAGAATTAA CAAGTAGAGAGAATAACGGTAGGCAGAGTCAGAATCAGGAATAAATATCAGTGAATCAAAAGAATGAAAAATATTATGTAATAAAAATTA GCAATGTAATGTAAACGTTTGATAAAAGAGTATCTTTTTCTTTTATCTCTTACTGTTGACCTCTGTGCACTGTAATAAGGTGTGTTGCTG GATCTTCTTGGTCGAGGTCCTTGGTGACCTTAGTAGTAATAACAGCATTGCTGACACCCTAATTGCCCTCTGCTGGAACAGAAGGTAGTT TTCCAGTGTACCAGTCCCTTAGTCTATACAGCACCCTTGGTTTAAGCACACTTGCCATCATCTGGTATCCTGCTAGACTAGAATCTCTTA AAAGCAAATTGGTTTTCTTTCAAAGACCAACTTGACTCCAAAGAGAGATTCAGAATCCTACTTCTCCTGCTGCTGCATAAAGAATCTCAA CCTTCATTTTATTTGAACACGGACCAAAGTGTTCCTGCTTCTGAGTTGTCTGTAAGCTAATTCTGCAGATGTTCCATTCAGATTTAAAGC TTTTTTACTGCATAGGATGTGGATAGGAAGCCTAACTATTGTATCTGATGGCAAGGCATATGTTGCAGCCACAGTACTGGCTATGGTCCC TTTGCTGAAACAAGCTACAGAAGCACTGATTCAAGTTGTGCTTGTGCTTGAACTTTTAATCTTCTAGATTTGTGAGGATGGCTCTTTTTC CTTCATAATGGATTACAATGTAAGCAAGTCATGGCCATATACTGGAGACGGGCTAAAGCTGCTTTTCCCTTAAAGTAAGTTTCCTACAGA TAAGGTATTTATGAGCACTGAGAAAGTCAGGACATGTACTCTAAATCACACAGAATGTTAATTCCACAGGAAGGCAATGCCAGACATTGA AAGAGGATCACATTCAACTTTTAATAGTAGTTCAATAACAAAACCTTAGCTTTTCAGGAACAATGTGAAGATACATTAGAATTGCCACAT CCATATCTTCAAAACACGCAACCTCTGCACCCTAATAACTGCTTACGGTATAATCAGTATGATGATGAGATTGAGGGGGTCTAAATTTAA GTTCCTTATCTCCTGAGTTATGTGAAAATATCCCTCAGTACAAAACATTTGTGTGTTTCACAGATGACTCTCTTGTTTTGCCGTAATGCT ACCAAGTTTATGGAAACTAGTCAACTGAAGGATTTTTCTGTTGTGTTATGTGTAAATGTCTGAACAGTAAAATCATCTGTGTATTCCTGT AACATTCACGAAGTATGAGGAAGTGGGTTTCTCCTTGTTTGATGTGAGTGGTTTTGCTTGTTGCATGGGTTCCCTGTGCTTTGTAACTTG CATGAACACAACCAGGTTTCTCAACAATGATTTGTCTGCTGACTCTTTTCAGAGATAGTGAAGGAAAAAAAATGTATTAAAACCCCAAAT >In-frame_CHP1_ENST00000334660_chr15_41523647_+_ARHGAP42_ENST00000298815_chr11_100830614_+_3894nt CATTCGGGGCTGGAACTCGAACGCTGACGTTGGCTCCTGAGCCGGGCGCTGCCTCGCGCCTGATTGGCGGGTCCTCGGGGCCGCCCTCCC CAGCGCACCACCCCTGGGTTCCCTCCCGGGTCCGCAGTGGAAACACTGCCCTCTCCCTTCTTGACCCCTAGCCCTTCCTTCCCTCCCTCC TTCCCTCCTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCGATGGGTTCTCGGGCCTCCACGTTACTGCGG GACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTGTATTTGAATGAAGCAGGGTTCAACTTTGTGAGAAAATGCATTCAAGCTGTG GAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTTCAAAAACTCATGAATACCACATTTTCTCCT AAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAACAAGTGGGCTGAAAAACTACCTCAGGTGCCTTGCA GAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCTGTTAAATCTGATGATCAAAACTACAGGGTGGAGGCTGTACATGCA TTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAGCATCTGGTCAAAGTATCACTACACAGCCAACAAAAT CTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAGGAAGAAACTGTGGCTGCTATGATGAATATTAAA TTTCAGAATATTGTGGTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCTCCAGACCCAAGCATTCCTCTTCCTCAGCCT CAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTGCCTCTCTACAGGGTCTAGGAAGCCCAGAGGGAGGTATACTCCATGCCTGGCC GAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAGTCACTCTCTTCTCATTCCTCTGAACAAAAT AGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATTGCAACCCCATCATCTTCCAATGGACAGAAA AGCCTTGGTCTGTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCAACCAAGACAGATGCAGAATCAGACTGCCAGAGTGTTGCT TCAGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTCAAGAAAGAGCCTTATGGGCTTTCAGGACTGAAAAGAGCTTCTGCT TCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAACAAGAGCTACAGTGGATCTATTCAAAGCTTAACTTCTGTAGGTTCCAAGGAGACA CCCAAAGCTTCACCAAACCCAGACCTGCCTCCGAAAATGTGCAGGAGATTAAGACTAGACACTGCCTCAAGCAATGGCTATCAGCGGCCT GGCTCAGTAGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTTTCTTCTGGGCGCCAAGCCAAAGCCATGTAC TCCTGTAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCAATATTTTCTAATGTGTACCCATCAGTGGAACCAGGATGGTTA AAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAATACTATTTAGTGGATGGCAGTATCTTCATG GTATCCATGGTAACGAATAAATGCTATGATTTTATCTGACACAGATACACGGGGATCAGCCCACTAAGTGAAAACAGTCAATTTCTATCA AGTTCTTCACCAGCAGACTATGTAGCTCCTTATTAATGGAAAAAAAGATTTAAATTGTTGGCCATTCTTTTTTGGTTGGTTTCTTATTTT AAAATATCTTACTTGTGAAAAATGTGTTTTTGGATAATATGTAACTCTCCACAATGTCGCTTCCGTAGCAATTGTAGAGTTTCAAATACT GTGTTAAATACTGTATCCCAGAAATTTGGAAACCAGAAATCTGCTATATGGATTTTGAGATCTGTCCTTTACTGCCTGGCATTCTCTGAG GATCTCTGAAATTGTTACTTAAAAATGTAATTTAAATTGTTCATTTATTGTTTTTTTTTTCTTAGAAATATACTGCTTTTATATATGATT GTTTTGCTGGTCCTAAACATTTCAAGGATGTAAGTCTTTGTTTTAATATAACTTTATTTGTTTTCCAAGTAGATGATAATATTCAAAAGC AATAATGTATATGATATCTATAAAGGAAGCAAAATTAAGTCATACACTGATTCCACTGTAAACAATCTGTCCAGAATTCCAGACACCTTC AGCAAACTTTTTCTGTAAAGGCCTGATAGCAAATATTTTTGTGGTGGGTTGAATTTGGCTTATGGGTTATAGTTTGCTGACACCTAGTTT AGAGGGTGTGTAAAACTATCTTCATAACTTTGAGATTTTTATAAAATTTTACATGAAAATATACTGATAAATTATATGCACATATTTTCT ACCAGTAGCATTATAGTGGCATCATAGAAGAATATTTACCAATGATGGGGAAACTGTAAAACTACAGTATCAAGGCATACAACTTAAATT CCACTTGGAAGATTGTAAAGTGTCAAAGTATTTTAATGATAATTTAATTTGGGCTTTTGAAATGTTCTTCTACAAATGAAAAAGATGTTT AAAAACGTTACAAGGGAAGCTATGCCTTCTGAAGTCTATCCTTAGTTGAAACAGAAAATAAACACAAAGGTACAAGATCCTTAAATTATT TTGAACCACAGAGGTTGAAATTGTTTTGTGATCTTCAGCAGAAATAAAATCTGTACATGATTTTCTTTTATGCCTTTTAGTTTACAGTCT TTATTAGCAATTTCAGTGAATTTGTAGAGCATAGTAATAGGTATTTACTGTCCACTTATATATATCAGCATCTGGTCATGCACGAACCAT TAATTCTATATTTCTATTTCAATAATTCTAATATATTATTTCTATAAATGTAATATCTGTATGTGGCAAAGAGCCTTTCTTCTCAAGATC CTGAAAAGCTGGTTACCTGCCCTTTGAGTGCCACAGTCCTGAACTGCTTGTTCTTGACATCTTGCATATTACTTCAGAGTTCCCCACTGT GCAGACTCTCAGGTATTAACTGTAAAAAACTCTTTACATGCCATTATTATCTGTAATCTCTATCTCTTCTACTTTAAATTAATGTTTCTA GAATTAATAGGTTAAATACACATACACACACACAACTATGCCTCAGAAAAGTTAGGCTTTTACAAATAAAAAGAATAAGATTAGAATTAA CAAGTAGAGAGAATAACGGTAGGCAGAGTCAGAATCAGGAATAAATATCAGTGAATCAAAAGAATGAAAAATATTATGTAATAAAAATTA GCAATGTAATGTAAACGTTTGATAAAAGAGTATCTTTTTCTTTTATCTCTTACTGTTGACCTCTGTGCACTGTAATAAGGTGTGTTGCTG GATCTTCTTGGTCGAGGTCCTTGGTGACCTTAGTAGTAATAACAGCATTGCTGACACCCTAATTGCCCTCTGCTGGAACAGAAGGTAGTT TTCCAGTGTACCAGTCCCTTAGTCTATACAGCACCCTTGGTTTAAGCACACTTGCCATCATCTGGTATCCTGCTAGACTAGAATCTCTTA AAAGCAAATTGGTTTTCTTTCAAAGACCAACTTGACTCCAAAGAGAGATTCAGAATCCTACTTCTCCTGCTGCTGCATAAAGAATCTCAA >In-frame_CHP1_ENST00000560397_chr15_41523647_+_ARHGAP42_ENST00000524892_chr11_100830614_+_4756nt TTGACCCCTAGCCCTTCCTTCCCTCCCTCCTTCCCTCCTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCG ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTGTATTTGAATGAAGCAGGGTTC AACTTTGTGAGAAAATGCATTCAAGCTGTGGAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTT CAAAAACTCATGAATACCACATTTTCTCCTAAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAACAAGT GGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCTGTTAAATCTGATGAT CAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAGCATCTG GTCAAAGTATCACTACACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAGGAA GAAACTGTGGCTGCTATGATGAATATTAAATTTCAGAATATTGTGGTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCT CCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTGCCTCTCTACAGGGTCTAGGAAG CCCAGAGGGAGGTATACTCCATGCCTGGCCGAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAG TCACTCTCTTCTCATTCCTCTGAACAAAATAGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATT GCAACCCCATCATCTTCCAATGGACAGAAAAGCCTTGGTCTGTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCAACCAAGACA GATGCAGAATCAGACTGCCAGAGTGTTGCTTCAGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTCAAGAAAGAGCCTTAT GGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAACAAGAGCTACAGTGGATCTATTCAA AGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCTTCACCAAACCCAGACCTGCCTCCGAAAATGTGCAGGAGATTAAGACTAGAC ACTGCCTCAAGCAATGGCTATCAGCGGCCTGGCTCAGTAGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTT TCTTCTGGGCGCCAAGCCAAAGCCATGTACTCCTGTAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCAATATTTTCTAAT GTGTACCCATCAGTGGAACCAGGATGGTTAAAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAA TACTATTTAGTGGATGGCAGTATCTTCATGGTATCCATGGTAACGAATAAATGCTATGATTTTATCTGACACAGATACACGGGGATCAGC CCACTAAGTGAAAACAGTCAATTTCTATCAAGTTCTTCACCAGCAGACTATGTAGCTCCTTATTAATGGAAAAAAAGATTTAAATTGTTG GCCATTCTTTTTTGGTTGGTTTCTTATTTTAAAATATCTTACTTGTGAAAAATGTGTTTTTGGATAATATGTAACTCTCCACAATGTCGC TTCCGTAGCAATTGTAGAGTTTCAAATACTGTGTTAAATACTGTATCCCAGAAATTTGGAAACCAGAAATCTGCTATATGGATTTTGAGA TCTGTCCTTTACTGCCTGGCATTCTCTGAGGATCTCTGAAATTGTTACTTAAAAATGTAATTTAAATTGTTCATTTATTGTTTTTTTTTT CTTAGAAATATACTGCTTTTATATATGATTGTTTTGCTGGTCCTAAACATTTCAAGGATGTAAGTCTTTGTTTTAATATAACTTTATTTG TTTTCCAAGTAGATGATAATATTCAAAAGCAATAATGTATATGATATCTATAAAGGAAGCAAAATTAAGTCATACACTGATTCCACTGTA AACAATCTGTCCAGAATTCCAGACACCTTCAGCAAACTTTTTCTGTAAAGGCCTGATAGCAAATATTTTTGTGGTGGGTTGAATTTGGCT TATGGGTTATAGTTTGCTGACACCTAGTTTAGAGGGTGTGTAAAACTATCTTCATAACTTTGAGATTTTTATAAAATTTTACATGAAAAT ATACTGATAAATTATATGCACATATTTTCTACCAGTAGCATTATAGTGGCATCATAGAAGAATATTTACCAATGATGGGGAAACTGTAAA ACTACAGTATCAAGGCATACAACTTAAATTCCACTTGGAAGATTGTAAAGTGTCAAAGTATTTTAATGATAATTTAATTTGGGCTTTTGA AATGTTCTTCTACAAATGAAAAAGATGTTTAAAAACGTTACAAGGGAAGCTATGCCTTCTGAAGTCTATCCTTAGTTGAAACAGAAAATA AACACAAAGGTACAAGATCCTTAAATTATTTTGAACCACAGAGGTTGAAATTGTTTTGTGATCTTCAGCAGAAATAAAATCTGTACATGA TTTTCTTTTATGCCTTTTAGTTTACAGTCTTTATTAGCAATTTCAGTGAATTTGTAGAGCATAGTAATAGGTATTTACTGTCCACTTATA TATATCAGCATCTGGTCATGCACGAACCATTAATTCTATATTTCTATTTCAATAATTCTAATATATTATTTCTATAAATGTAATATCTGT ATGTGGCAAAGAGCCTTTCTTCTCAAGATCCTGAAAAGCTGGTTACCTGCCCTTTGAGTGCCACAGTCCTGAACTGCTTGTTCTTGACAT CTTGCATATTACTTCAGAGTTCCCCACTGTGCAGACTCTCAGGTATTAACTGTAAAAAACTCTTTACATGCCATTATTATCTGTAATCTC TATCTCTTCTACTTTAAATTAATGTTTCTAGAATTAATAGGTTAAATACACATACACACACACAACTATGCCTCAGAAAAGTTAGGCTTT TACAAATAAAAAGAATAAGATTAGAATTAACAAGTAGAGAGAATAACGGTAGGCAGAGTCAGAATCAGGAATAAATATCAGTGAATCAAA AGAATGAAAAATATTATGTAATAAAAATTAGCAATGTAATGTAAACGTTTGATAAAAGAGTATCTTTTTCTTTTATCTCTTACTGTTGAC CTCTGTGCACTGTAATAAGGTGTGTTGCTGGATCTTCTTGGTCGAGGTCCTTGGTGACCTTAGTAGTAATAACAGCATTGCTGACACCCT AATTGCCCTCTGCTGGAACAGAAGGTAGTTTTCCAGTGTACCAGTCCCTTAGTCTATACAGCACCCTTGGTTTAAGCACACTTGCCATCA TCTGGTATCCTGCTAGACTAGAATCTCTTAAAAGCAAATTGGTTTTCTTTCAAAGACCAACTTGACTCCAAAGAGAGATTCAGAATCCTA CTTCTCCTGCTGCTGCATAAAGAATCTCAACCTTCATTTTATTTGAACACGGACCAAAGTGTTCCTGCTTCTGAGTTGTCTGTAAGCTAA TTCTGCAGATGTTCCATTCAGATTTAAAGCTTTTTTACTGCATAGGATGTGGATAGGAAGCCTAACTATTGTATCTGATGGCAAGGCATA TGTTGCAGCCACAGTACTGGCTATGGTCCCTTTGCTGAAACAAGCTACAGAAGCACTGATTCAAGTTGTGCTTGTGCTTGAACTTTTAAT CTTCTAGATTTGTGAGGATGGCTCTTTTTCCTTCATAATGGATTACAATGTAAGCAAGTCATGGCCATATACTGGAGACGGGCTAAAGCT GCTTTTCCCTTAAAGTAAGTTTCCTACAGATAAGGTATTTATGAGCACTGAGAAAGTCAGGACATGTACTCTAAATCACACAGAATGTTA ATTCCACAGGAAGGCAATGCCAGACATTGAAAGAGGATCACATTCAACTTTTAATAGTAGTTCAATAACAAAACCTTAGCTTTTCAGGAA CAATGTGAAGATACATTAGAATTGCCACATCCATATCTTCAAAACACGCAACCTCTGCACCCTAATAACTGCTTACGGTATAATCAGTAT GATGATGAGATTGAGGGGGTCTAAATTTAAGTTCCTTATCTCCTGAGTTATGTGAAAATATCCCTCAGTACAAAACATTTGTGTGTTTCA CAGATGACTCTCTTGTTTTGCCGTAATGCTACCAAGTTTATGGAAACTAGTCAACTGAAGGATTTTTCTGTTGTGTTATGTGTAAATGTC TGAACAGTAAAATCATCTGTGTATTCCTGTAACATTCACGAAGTATGAGGAAGTGGGTTTCTCCTTGTTTGATGTGAGTGGTTTTGCTTG TTGCATGGGTTCCCTGTGCTTTGTAACTTGCATGAACACAACCAGGTTTCTCAACAATGATTTGTCTGCTGACTCTTTTCAGAGATAGTG >In-frame_CHP1_ENST00000560397_chr15_41523647_+_ARHGAP42_ENST00000298815_chr11_100830614_+_3744nt TTGACCCCTAGCCCTTCCTTCCCTCCCTCCTTCCCTCCTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCG ATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTGTATTTGAATGAAGCAGGGTTC AACTTTGTGAGAAAATGCATTCAAGCTGTGGAAACAAGAGGTATCACCATTTTAGGACTCTACCGAATAGGAGGAGTGAACTCCAAAGTT CAAAAACTCATGAATACCACATTTTCTCCTAAATCCCCTCCTGATATTGATATTGATATTGAACTGTGGGACAATAAGACGATAACAAGT GGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTACAAGTTGCACAAAGATTTTATCATTGCTGTTAAATCTGATGAT CAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAGCATCTG GTCAAAGTATCACTACACAGCCAACAAAATCTCATGACTGTCTCAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAGGAA GAAACTGTGGCTGCTATGATGAATATTAAATTTCAGAATATTGTGGTAGAAATTCTGATAGAGCACTATGAAAAGATTTTTCATACTGCT CCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCGAAGGACACGAGCAATCTGCCTCTCTACAGGGTCTAGGAAG CCCAGAGGGAGGTATACTCCATGCCTGGCCGAACCTGATAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCTATGGGGAGCATTGAG TCACTCTCTTCTCATTCCTCTGAACAAAATAGCACTACAAAGTCAGCTTCCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATT GCAACCCCATCATCTTCCAATGGACAGAAAAGCCTTGGTCTGTGGACAACTAGTCCTGAATCAAGTTCCAGAGAAGATGCAACCAAGACA GATGCAGAATCAGACTGCCAGAGTGTTGCTTCAGTCACTAGCCCAGGAGACGTTTCCCCACCCATAGACCTAGTCAAGAAAGAGCCTTAT GGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCTTCTCTCAGATCCATCTCTGCAGCTGAAGGAAACAAGAGCTACAGTGGATCTATTCAA AGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCTTCACCAAACCCAGACCTGCCTCCGAAAATGTGCAGGAGATTAAGACTAGAC ACTGCCTCAAGCAATGGCTATCAGCGGCCTGGCTCAGTAGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAACCAGTT TCTTCTGGGCGCCAAGCCAAAGCCATGTACTCCTGTAAAGCAGAGCACAGTCATGAGCTTTCCTTCCCACAAGGAGCAATATTTTCTAAT GTGTACCCATCAGTGGAACCAGGATGGTTAAAGGCAACTTATGAAGGCAAAACAGGACTAGTTCCAGAAAATTATGTTGTCTTCCTCTAA TACTATTTAGTGGATGGCAGTATCTTCATGGTATCCATGGTAACGAATAAATGCTATGATTTTATCTGACACAGATACACGGGGATCAGC CCACTAAGTGAAAACAGTCAATTTCTATCAAGTTCTTCACCAGCAGACTATGTAGCTCCTTATTAATGGAAAAAAAGATTTAAATTGTTG GCCATTCTTTTTTGGTTGGTTTCTTATTTTAAAATATCTTACTTGTGAAAAATGTGTTTTTGGATAATATGTAACTCTCCACAATGTCGC TTCCGTAGCAATTGTAGAGTTTCAAATACTGTGTTAAATACTGTATCCCAGAAATTTGGAAACCAGAAATCTGCTATATGGATTTTGAGA TCTGTCCTTTACTGCCTGGCATTCTCTGAGGATCTCTGAAATTGTTACTTAAAAATGTAATTTAAATTGTTCATTTATTGTTTTTTTTTT CTTAGAAATATACTGCTTTTATATATGATTGTTTTGCTGGTCCTAAACATTTCAAGGATGTAAGTCTTTGTTTTAATATAACTTTATTTG TTTTCCAAGTAGATGATAATATTCAAAAGCAATAATGTATATGATATCTATAAAGGAAGCAAAATTAAGTCATACACTGATTCCACTGTA AACAATCTGTCCAGAATTCCAGACACCTTCAGCAAACTTTTTCTGTAAAGGCCTGATAGCAAATATTTTTGTGGTGGGTTGAATTTGGCT TATGGGTTATAGTTTGCTGACACCTAGTTTAGAGGGTGTGTAAAACTATCTTCATAACTTTGAGATTTTTATAAAATTTTACATGAAAAT ATACTGATAAATTATATGCACATATTTTCTACCAGTAGCATTATAGTGGCATCATAGAAGAATATTTACCAATGATGGGGAAACTGTAAA ACTACAGTATCAAGGCATACAACTTAAATTCCACTTGGAAGATTGTAAAGTGTCAAAGTATTTTAATGATAATTTAATTTGGGCTTTTGA AATGTTCTTCTACAAATGAAAAAGATGTTTAAAAACGTTACAAGGGAAGCTATGCCTTCTGAAGTCTATCCTTAGTTGAAACAGAAAATA AACACAAAGGTACAAGATCCTTAAATTATTTTGAACCACAGAGGTTGAAATTGTTTTGTGATCTTCAGCAGAAATAAAATCTGTACATGA TTTTCTTTTATGCCTTTTAGTTTACAGTCTTTATTAGCAATTTCAGTGAATTTGTAGAGCATAGTAATAGGTATTTACTGTCCACTTATA TATATCAGCATCTGGTCATGCACGAACCATTAATTCTATATTTCTATTTCAATAATTCTAATATATTATTTCTATAAATGTAATATCTGT ATGTGGCAAAGAGCCTTTCTTCTCAAGATCCTGAAAAGCTGGTTACCTGCCCTTTGAGTGCCACAGTCCTGAACTGCTTGTTCTTGACAT CTTGCATATTACTTCAGAGTTCCCCACTGTGCAGACTCTCAGGTATTAACTGTAAAAAACTCTTTACATGCCATTATTATCTGTAATCTC TATCTCTTCTACTTTAAATTAATGTTTCTAGAATTAATAGGTTAAATACACATACACACACACAACTATGCCTCAGAAAAGTTAGGCTTT TACAAATAAAAAGAATAAGATTAGAATTAACAAGTAGAGAGAATAACGGTAGGCAGAGTCAGAATCAGGAATAAATATCAGTGAATCAAA AGAATGAAAAATATTATGTAATAAAAATTAGCAATGTAATGTAAACGTTTGATAAAAGAGTATCTTTTTCTTTTATCTCTTACTGTTGAC CTCTGTGCACTGTAATAAGGTGTGTTGCTGGATCTTCTTGGTCGAGGTCCTTGGTGACCTTAGTAGTAATAACAGCATTGCTGACACCCT AATTGCCCTCTGCTGGAACAGAAGGTAGTTTTCCAGTGTACCAGTCCCTTAGTCTATACAGCACCCTTGGTTTAAGCACACTTGCCATCA TCTGGTATCCTGCTAGACTAGAATCTCTTAAAAGCAAATTGGTTTTCTTTCAAAGACCAACTTGACTCCAAAGAGAGATTCAGAATCCTA 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FusionGenePPI for CHP1_ARHGAP42 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| CHP1 | SLC9A1, SLC9A2, SLC9A3, SLC9A4, SLC9A5, PRSS23, ELAVL1, SHMT2, MOV10, NXF1, TMEM216, XPO1, DUSP22, DUSP6, UBC | ARHGAP42 | DEF6, CAPZA2, MYO19, ARHGAP26, DENND2C |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CHP1_ARHGAP42 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Hgene | CHP1 | Q99653 | DB11093 | Calcium Citrate | Calcineurin B homologous protein 1 | small molecule | approved |
| Hgene | CHP1 | Q99653 | DB11348 | Calcium Phosphate | Calcineurin B homologous protein 1 | small molecule | approved |
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RelatedDiseases for CHP1_ARHGAP42 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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