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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 7078

FusionGeneSummary for CHIC2_TSGA10

check button Fusion gene summary
Fusion gene informationFusion gene name: CHIC2_TSGA10
Fusion gene ID: 7078
HgeneTgene
Gene symbol

CHIC2

TSGA10

Gene ID

26511

80705

Gene namecysteine rich hydrophobic domain 2testis specific 10
SynonymsBTLCEP4L|CT79|SPGF26
Cytomap

4q12

2q11.2

Type of geneprotein-codingprotein-coding
Descriptioncysteine-rich hydrophobic domain-containing protein 2BRX-like translocated in leukemiacystein-rich hydrophobic domain 2cysteine-rich hydrophobic domain 2 proteintestis-specific gene 10 proteincancer/testis antigen 79testis development protein NYD-SP7testis-specific 10 protein
Modification date2018052320180519
UniProtAcc

Q9UKJ5

Q9BZW7

Ensembl transtripts involved in fusion geneENST00000263921, ENST00000512964, 
ENST00000393483, ENST00000410001, 
ENST00000355053, ENST00000539964, 
ENST00000542655, ENST00000478090, 
Fusion gene scores* DoF score6 X 3 X 5=904 X 4 X 3=48
# samples 64
** MAII scorelog2(6/90*10)=-0.584962500721156
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CHIC2 [Title/Abstract] AND TSGA10 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVUCSTCGA-N9-A4Q1-01ACHIC2chr4

54915122

-TSGA10chr2

99614684

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000263921ENST00000393483CHIC2chr4

54915122

-TSGA10chr2

99614684

-
Frame-shiftENST00000263921ENST00000410001CHIC2chr4

54915122

-TSGA10chr2

99614684

-
In-frameENST00000263921ENST00000355053CHIC2chr4

54915122

-TSGA10chr2

99614684

-
In-frameENST00000263921ENST00000539964CHIC2chr4

54915122

-TSGA10chr2

99614684

-
5CDS-intronENST00000263921ENST00000542655CHIC2chr4

54915122

-TSGA10chr2

99614684

-
5CDS-intronENST00000263921ENST00000478090CHIC2chr4

54915122

-TSGA10chr2

99614684

-
Frame-shiftENST00000512964ENST00000393483CHIC2chr4

54915122

-TSGA10chr2

99614684

-
Frame-shiftENST00000512964ENST00000410001CHIC2chr4

54915122

-TSGA10chr2

99614684

-
In-frameENST00000512964ENST00000355053CHIC2chr4

54915122

-TSGA10chr2

99614684

-
In-frameENST00000512964ENST00000539964CHIC2chr4

54915122

-TSGA10chr2

99614684

-
5CDS-intronENST00000512964ENST00000542655CHIC2chr4

54915122

-TSGA10chr2

99614684

-
5CDS-intronENST00000512964ENST00000478090CHIC2chr4

54915122

-TSGA10chr2

99614684

-

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FusionProtFeatures for CHIC2_TSGA10


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CHIC2

Q9UKJ5

TSGA10

Q9BZW7

May play a role in the sperm tail fibrous sheath, amajor sperm tail structure. {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CHIC2_TSGA10


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_118aa
MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC

>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_118aa
MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC

>In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_118aa
MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC

>In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_118aa
MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_355nt
ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG
GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT
CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC

>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_355nt
ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG
GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT
CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC

>In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_355nt
ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG
GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT
CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC

>In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_355nt
ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG
GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT
CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC


* Fusion transcript sequences (Full-length transcript).
>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_1056nt
ACGCGCCCGCCCGCCCGTTGGCCCGGGAAGTCTCGCGATGCCGTAGCCGGCTGCTCCCGCTGCGGGTGGCTCGGGCTGTTGCTGTGGTTT
CCTGAGTTGCTGCTGCTGCGGCGGCGGCAGCGGCGTCTGTGCTTGTGGAGGTGTCGGCCTCTGGGCGGATGTTGACATTGTGTTGTTGTT
ATTGCTGATGGTAATGGCGGCGGCGGTGGCGGCGACGGTCCAGACCCCATCCCCTCTGTAGCCGGAGCCGAGACAGCCGACAGCGAACTC
CGCGGCCTCGGAGCCGGCGGCAGCGGCGACTCCCCTCAGCCTCCGCCGCCTCGCCCGCCGGTACCCCGGCGCCAACCCCGGGAGTCAGGC
CCTTTGGGCAGGGGAGCTCGGAGGCTCAGGATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAG
CAGCTGCTCAAGTACTCGCCGGACCCGGTGGTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAA
TTCCCTTCTTCATTAACTGGAAAAGTAGCTCCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCT
GTTAATGTACGTTGGCTACTTTGTGGCTGCCTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCAGTAAAAGA
GAATCTTTGCTACAGAGATTTCTGACACCTGAAATGATTCTTCACATCCCTGAGAAAGGTCAAAGTTACAAACTGATTTTTTTTTTTTTG
CTACATGAGTGCATTTATCTTTTAAATGCTTGGCAATGTTAAATGTATTTATTAACTTTGTGTCTCTGAATCTCTGTTCTAATGTGCCAT
GTTGCAGTGATCTGAGATGACTTATAAAAACAAAAATGTATATGGCTCTTTCTATCCATGCAGTGATAGTGAGTGTAAAATCTGCTTACT

>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_745nt
ACGCGCCCGCCCGCCCGTTGGCCCGGGAAGTCTCGCGATGCCGTAGCCGGCTGCTCCCGCTGCGGGTGGCTCGGGCTGTTGCTGTGGTTT
CCTGAGTTGCTGCTGCTGCGGCGGCGGCAGCGGCGTCTGTGCTTGTGGAGGTGTCGGCCTCTGGGCGGATGTTGACATTGTGTTGTTGTT
ATTGCTGATGGTAATGGCGGCGGCGGTGGCGGCGACGGTCCAGACCCCATCCCCTCTGTAGCCGGAGCCGAGACAGCCGACAGCGAACTC
CGCGGCCTCGGAGCCGGCGGCAGCGGCGACTCCCCTCAGCCTCCGCCGCCTCGCCCGCCGGTACCCCGGCGCCAACCCCGGGAGTCAGGC
CCTTTGGGCAGGGGAGCTCGGAGGCTCAGGATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAG
CAGCTGCTCAAGTACTCGCCGGACCCGGTGGTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAA
TTCCCTTCTTCATTAACTGGAAAAGTAGCTCCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCT
GTTAATGTACGTTGGCTACTTTGTGGCTGCCTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCAGTAAAAGA

>In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_666nt
ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG
GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT
CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC
CTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCAGTAAAAGAGAATCTTTGCTACAGAGATTTCTGACACCT
GAAATGATTCTTCACATCCCTGAGAAAGGTCAAAGTTACAAACTGATTTTTTTTTTTTTGCTACATGAGTGCATTTATCTTTTAAATGCT
TGGCAATGTTAAATGTATTTATTAACTTTGTGTCTCTGAATCTCTGTTCTAATGTGCCATGTTGCAGTGATCTGAGATGACTTATAAAAA
CAAAAATGTATATGGCTCTTTCTATCCATGCAGTGATAGTGAGTGTAAAATCTGCTTACTTCACTATTGAACACTATTCTGTTCACTATC

>In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_355nt
ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG
GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT
CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC


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FusionGenePPI for CHIC2_TSGA10


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
CHIC2TOP3B, MDFI, U2AF2, KRTAP4-12, HOXA1, OTX1, CATSPER1, PLEKHF2, ITSN2, ELAVL1, TUBGCP4, CDR2, KRTAP5-9, MEOX2, TCF4, PNMA1, GMCL1, CEP44, KRTAP4-2, KRT40, SPERT, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-8, KRTAP10-3, NOTCH2NL, DHRS9, UBE2NTSGA10TRIM29, VIM, MYH9, ACTG1, OBSL1, TUBB, TUBA3C, MYL6, PLEC, FLNA, AES, BIRC2, CDK18, TCEA2, ZNF2, ZNF124, SCEL, CREB5, ZBTB24, MID2, PRPF31, ZNF544, PPHLN1, CCHCR1, RCOR3, CBX8, ZNF490, ZNF410, ZNF426, CDC73, CCDC33, TSGA10, CEP44, FAM161A, ZNF587, FBF1, ZNF670, ZNF417, ZNF599, SYT6, PPP1R18, SPERT, ZBTB38, BCL6B, RTP5, CEP57L1, FLJ38668, LMNA


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CHIC2_TSGA10


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CHIC2_TSGA10


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource