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Fusion gene ID: 7078 |
FusionGeneSummary for CHIC2_TSGA10 |
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Fusion gene information | Fusion gene name: CHIC2_TSGA10 | Fusion gene ID: 7078 | Hgene | Tgene | Gene symbol | CHIC2 | TSGA10 | Gene ID | 26511 | 80705 |
Gene name | cysteine rich hydrophobic domain 2 | testis specific 10 | |
Synonyms | BTL | CEP4L|CT79|SPGF26 | |
Cytomap | 4q12 | 2q11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | cysteine-rich hydrophobic domain-containing protein 2BRX-like translocated in leukemiacystein-rich hydrophobic domain 2cysteine-rich hydrophobic domain 2 protein | testis-specific gene 10 proteincancer/testis antigen 79testis development protein NYD-SP7testis-specific 10 protein | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9UKJ5 | Q9BZW7 | |
Ensembl transtripts involved in fusion gene | ENST00000263921, ENST00000512964, | ENST00000393483, ENST00000410001, ENST00000355053, ENST00000539964, ENST00000542655, ENST00000478090, | |
Fusion gene scores | * DoF score | 6 X 3 X 5=90 | 4 X 4 X 3=48 |
# samples | 6 | 4 | |
** MAII score | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CHIC2 [Title/Abstract] AND TSGA10 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | UCS | TCGA-N9-A4Q1-01A | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000263921 | ENST00000393483 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
Frame-shift | ENST00000263921 | ENST00000410001 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
In-frame | ENST00000263921 | ENST00000355053 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
In-frame | ENST00000263921 | ENST00000539964 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
5CDS-intron | ENST00000263921 | ENST00000542655 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
5CDS-intron | ENST00000263921 | ENST00000478090 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
Frame-shift | ENST00000512964 | ENST00000393483 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
Frame-shift | ENST00000512964 | ENST00000410001 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
In-frame | ENST00000512964 | ENST00000355053 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
In-frame | ENST00000512964 | ENST00000539964 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
5CDS-intron | ENST00000512964 | ENST00000542655 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
5CDS-intron | ENST00000512964 | ENST00000478090 | CHIC2 | chr4 | 54915122 | - | TSGA10 | chr2 | 99614684 | - |
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FusionProtFeatures for CHIC2_TSGA10 |
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Hgene | Tgene |
CHIC2 | TSGA10 |
May play a role in the sperm tail fibrous sheath, amajor sperm tail structure. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CHIC2_TSGA10 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_118aa MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC >In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_118aa MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC >In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_118aa MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC >In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_118aa MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGC |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_355nt ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC >In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_355nt ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC >In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_355nt ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC >In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_355nt ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_1056nt ACGCGCCCGCCCGCCCGTTGGCCCGGGAAGTCTCGCGATGCCGTAGCCGGCTGCTCCCGCTGCGGGTGGCTCGGGCTGTTGCTGTGGTTT CCTGAGTTGCTGCTGCTGCGGCGGCGGCAGCGGCGTCTGTGCTTGTGGAGGTGTCGGCCTCTGGGCGGATGTTGACATTGTGTTGTTGTT ATTGCTGATGGTAATGGCGGCGGCGGTGGCGGCGACGGTCCAGACCCCATCCCCTCTGTAGCCGGAGCCGAGACAGCCGACAGCGAACTC CGCGGCCTCGGAGCCGGCGGCAGCGGCGACTCCCCTCAGCCTCCGCCGCCTCGCCCGCCGGTACCCCGGCGCCAACCCCGGGAGTCAGGC CCTTTGGGCAGGGGAGCTCGGAGGCTCAGGATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAG CAGCTGCTCAAGTACTCGCCGGACCCGGTGGTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAA TTCCCTTCTTCATTAACTGGAAAAGTAGCTCCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCT GTTAATGTACGTTGGCTACTTTGTGGCTGCCTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCAGTAAAAGA GAATCTTTGCTACAGAGATTTCTGACACCTGAAATGATTCTTCACATCCCTGAGAAAGGTCAAAGTTACAAACTGATTTTTTTTTTTTTG CTACATGAGTGCATTTATCTTTTAAATGCTTGGCAATGTTAAATGTATTTATTAACTTTGTGTCTCTGAATCTCTGTTCTAATGTGCCAT GTTGCAGTGATCTGAGATGACTTATAAAAACAAAAATGTATATGGCTCTTTCTATCCATGCAGTGATAGTGAGTGTAAAATCTGCTTACT >In-frame_CHIC2_ENST00000263921_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_745nt ACGCGCCCGCCCGCCCGTTGGCCCGGGAAGTCTCGCGATGCCGTAGCCGGCTGCTCCCGCTGCGGGTGGCTCGGGCTGTTGCTGTGGTTT CCTGAGTTGCTGCTGCTGCGGCGGCGGCAGCGGCGTCTGTGCTTGTGGAGGTGTCGGCCTCTGGGCGGATGTTGACATTGTGTTGTTGTT ATTGCTGATGGTAATGGCGGCGGCGGTGGCGGCGACGGTCCAGACCCCATCCCCTCTGTAGCCGGAGCCGAGACAGCCGACAGCGAACTC CGCGGCCTCGGAGCCGGCGGCAGCGGCGACTCCCCTCAGCCTCCGCCGCCTCGCCCGCCGGTACCCCGGCGCCAACCCCGGGAGTCAGGC CCTTTGGGCAGGGGAGCTCGGAGGCTCAGGATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAG CAGCTGCTCAAGTACTCGCCGGACCCGGTGGTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAA TTCCCTTCTTCATTAACTGGAAAAGTAGCTCCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCT GTTAATGTACGTTGGCTACTTTGTGGCTGCCTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCAGTAAAAGA >In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000355053_chr2_99614684_-_666nt ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC CTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCAGTAAAAGAGAATCTTTGCTACAGAGATTTCTGACACCT GAAATGATTCTTCACATCCCTGAGAAAGGTCAAAGTTACAAACTGATTTTTTTTTTTTTGCTACATGAGTGCATTTATCTTTTAAATGCT TGGCAATGTTAAATGTATTTATTAACTTTGTGTCTCTGAATCTCTGTTCTAATGTGCCATGTTGCAGTGATCTGAGATGACTTATAAAAA CAAAAATGTATATGGCTCTTTCTATCCATGCAGTGATAGTGAGTGTAAAATCTGCTTACTTCACTATTGAACACTATTCTGTTCACTATC >In-frame_CHIC2_ENST00000512964_chr4_54915122_-_TSGA10_ENST00000539964_chr2_99614684_-_355nt ATGGCGGATTTCGACGAAATCTATGAGGAAGAGGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGGACCCGGTG GTCGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTGAATCTGAATTCCCTTCTTCATTAACTGGAAAAGTAGCT CCTGAAGAATTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGC |
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FusionGenePPI for CHIC2_TSGA10 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CHIC2 | TOP3B, MDFI, U2AF2, KRTAP4-12, HOXA1, OTX1, CATSPER1, PLEKHF2, ITSN2, ELAVL1, TUBGCP4, CDR2, KRTAP5-9, MEOX2, TCF4, PNMA1, GMCL1, CEP44, KRTAP4-2, KRT40, SPERT, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-8, KRTAP10-3, NOTCH2NL, DHRS9, UBE2N | TSGA10 | TRIM29, VIM, MYH9, ACTG1, OBSL1, TUBB, TUBA3C, MYL6, PLEC, FLNA, AES, BIRC2, CDK18, TCEA2, ZNF2, ZNF124, SCEL, CREB5, ZBTB24, MID2, PRPF31, ZNF544, PPHLN1, CCHCR1, RCOR3, CBX8, ZNF490, ZNF410, ZNF426, CDC73, CCDC33, TSGA10, CEP44, FAM161A, ZNF587, FBF1, ZNF670, ZNF417, ZNF599, SYT6, PPP1R18, SPERT, ZBTB38, BCL6B, RTP5, CEP57L1, FLJ38668, LMNA |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CHIC2_TSGA10 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CHIC2_TSGA10 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |