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Fusion gene ID: 7073 |
FusionGeneSummary for CHIC2_LPHN3 |
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Fusion gene information | Fusion gene name: CHIC2_LPHN3 | Fusion gene ID: 7073 | Hgene | Tgene | Gene symbol | CHIC2 | LPHN3 | Gene ID | 26511 | 23284 |
Gene name | cysteine rich hydrophobic domain 2 | adhesion G protein-coupled receptor L3 | |
Synonyms | BTL | CIRL3|CL3|LEC3|LPHN3 | |
Cytomap | 4q12 | 4q13.1 | |
Type of gene | protein-coding | protein-coding | |
Description | cysteine-rich hydrophobic domain-containing protein 2BRX-like translocated in leukemiacystein-rich hydrophobic domain 2cysteine-rich hydrophobic domain 2 protein | adhesion G protein-coupled receptor L3CIRL-3calcium-independent alpha-latrotoxin receptor 3latrophilin homolog 3 (cow)latrophilin-3lectomedin 3 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9UKJ5 | ||
Ensembl transtripts involved in fusion gene | ENST00000263921, ENST00000512964, | ENST00000512091, ENST00000514591, ENST00000511324, ENST00000506700, ENST00000509896, ENST00000545650, ENST00000508693, ENST00000507164, ENST00000507625, ENST00000514157, ENST00000504896, ENST00000514996, ENST00000506720, ENST00000506746, ENST00000508946, ENST00000508078, | |
Fusion gene scores | * DoF score | 6 X 3 X 5=90 | 3 X 3 X 3=27 |
# samples | 6 | 3 | |
** MAII score | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CHIC2 [Title/Abstract] AND LPHN3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | LPHN3 | GO:0098742 | cell-cell adhesion via plasma-membrane adhesion molecules | 26235030 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | GBM | TCGA-19-0957-02A | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000263921 | ENST00000512091 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-5UTR | ENST00000263921 | ENST00000514591 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000511324 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000506700 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000509896 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000545650 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000508693 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000507164 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000507625 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000514157 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000504896 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000514996 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000506720 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000506746 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000508946 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000263921 | ENST00000508078 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-5UTR | ENST00000512964 | ENST00000512091 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-5UTR | ENST00000512964 | ENST00000514591 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000511324 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000506700 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000509896 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000545650 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000508693 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000507164 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000507625 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000514157 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000504896 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000514996 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000506720 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000506746 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000508946 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
5CDS-intron | ENST00000512964 | ENST00000508078 | CHIC2 | chr4 | 54880004 | - | LPHN3 | chr4 | 62248842 | + |
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FusionProtFeatures for CHIC2_LPHN3 |
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Hgene | Tgene |
CHIC2 | LPHN3 |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CHIC2_LPHN3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CHIC2_LPHN3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CHIC2 | TOP3B, MDFI, U2AF2, KRTAP4-12, HOXA1, OTX1, CATSPER1, PLEKHF2, ITSN2, ELAVL1, TUBGCP4, CDR2, KRTAP5-9, MEOX2, TCF4, PNMA1, GMCL1, CEP44, KRTAP4-2, KRT40, SPERT, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-8, KRTAP10-3, NOTCH2NL, DHRS9, UBE2N | LPHN3 | ASGR2, FLRT1, LPAR1, C3AR1, MMP26, CLEC2D, IPPK |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CHIC2_LPHN3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CHIC2_LPHN3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |