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Fusion gene ID: 7006 |
FusionGeneSummary for CHD6_PKM |
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Fusion gene information | Fusion gene name: CHD6_PKM | Fusion gene ID: 7006 | Hgene | Tgene | Gene symbol | CHD6 | PKM | Gene ID | 84181 | 5315 |
Gene name | chromodomain helicase DNA binding protein 6 | pyruvate kinase M1/2 | |
Synonyms | CHD-6|CHD5|RIGB | CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 | |
Cytomap | 20q12 | 15q23 | |
Type of gene | protein-coding | protein-coding | |
Description | chromodomain-helicase-DNA-binding protein 6ATP-dependent helicase CHD6helicase C-terminal domain- and SNF2 N-terminal domain-containing proteinradiation-induced gene B protein | pyruvate kinase PKMOIP-3OPA-interacting protein 3PK, muscle typecytosolic thyroid hormone-binding proteinepididymis secretory protein Li 30p58pyruvate kinase 2/3pyruvate kinase isozymes M1/M2pyruvate kinase muscle isozymepyruvate kinase, muscle | |
Modification date | 20180519 | 20180527 | |
UniProtAcc | Q8TD26 | P14618 | |
Ensembl transtripts involved in fusion gene | ENST00000373233, ENST00000309279, ENST00000373222, ENST00000480022, | ENST00000319622, ENST00000565184, ENST00000389093, ENST00000335181, ENST00000568883, ENST00000449901, ENST00000565154, ENST00000568459, | |
Fusion gene scores | * DoF score | 22 X 14 X 10=3080 | 20 X 23 X 3=1380 |
# samples | 25 | 24 | |
** MAII score | log2(25/3080*10)=-3.62293035092018 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(24/1380*10)=-2.52356195605701 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CHD6 [Title/Abstract] AND PKM [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PKM | GO:0012501 | programmed cell death | 17308100 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF765763 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000373233 | ENST00000319622 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373233 | ENST00000565184 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373233 | ENST00000389093 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373233 | ENST00000335181 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373233 | ENST00000568883 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373233 | ENST00000449901 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373233 | ENST00000565154 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373233 | ENST00000568459 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000309279 | ENST00000319622 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000309279 | ENST00000565184 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000309279 | ENST00000389093 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000309279 | ENST00000335181 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000309279 | ENST00000568883 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000309279 | ENST00000449901 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000309279 | ENST00000565154 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000309279 | ENST00000568459 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373222 | ENST00000319622 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373222 | ENST00000565184 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373222 | ENST00000389093 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373222 | ENST00000335181 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373222 | ENST00000568883 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373222 | ENST00000449901 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373222 | ENST00000565154 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000373222 | ENST00000568459 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000480022 | ENST00000319622 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000480022 | ENST00000565184 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000480022 | ENST00000389093 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000480022 | ENST00000335181 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000480022 | ENST00000568883 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000480022 | ENST00000449901 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000480022 | ENST00000565154 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
intron-intron | ENST00000480022 | ENST00000568459 | CHD6 | chr20 | 40081436 | + | PKM | chr15 | 72494962 | - |
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FusionProtFeatures for CHD6_PKM |
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Hgene | Tgene |
CHD6 | PKM |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CHD6_PKM |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CHD6_PKM |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CHD6_PKM |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | PKM | P14618 | DB11638 | Artenimol | Pyruvate kinase PKM | small molecule | approved|investigational |
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RelatedDiseases for CHD6_PKM |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CHD6 | C0005695 | Bladder Neoplasm | 1 | CTD_human |
Hgene | CHD6 | C0007138 | Carcinoma, Transitional Cell | 1 | CTD_human |
Hgene | CHD6 | C0027819 | Neuroblastoma | 1 | CTD_human |
Tgene | PKM | C0027626 | Neoplasm Invasiveness | 2 | CTD_human |
Tgene | PKM | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Tgene | PKM | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
Tgene | PKM | C0029456 | Osteoporosis | 1 | CTD_human |
Tgene | PKM | C2239176 | Liver carcinoma | 1 | CTD_human |