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Fusion gene ID: 6981 |
FusionGeneSummary for CHD3_RAD51C |
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Fusion gene information | Fusion gene name: CHD3_RAD51C | Fusion gene ID: 6981 | Hgene | Tgene | Gene symbol | CHD3 | RAD51C | Gene ID | 1107 | 5889 |
Gene name | chromodomain helicase DNA binding protein 3 | RAD51 paralog C | |
Synonyms | Mi-2a|Mi2-ALPHA|ZFH | BROVCA3|FANCO|R51H3|RAD51L2 | |
Cytomap | 17p13.1 | 17q22 | |
Type of gene | protein-coding | protein-coding | |
Description | chromodomain-helicase-DNA-binding protein 3ATP-dependent helicase CHD3CHD-3hZFHmi-2 autoantigen 240 kDa proteinzinc finger helicasezinc-finger helicase (Snf2-like) | DNA repair protein RAD51 homolog 3RAD51-like protein 2yeast RAD51 homolog 3 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q12873 | O43502 | |
Ensembl transtripts involved in fusion gene | ENST00000380358, ENST00000358181, ENST00000330494, ENST00000570758, | ENST00000583539, ENST00000337432, ENST00000487921, ENST00000421782, | |
Fusion gene scores | * DoF score | 6 X 6 X 2=72 | 7 X 4 X 2=56 |
# samples | 6 | 8 | |
** MAII score | log2(6/72*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/56*10)=0.514573172829758 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CHD3 [Title/Abstract] AND RAD51C [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CHD3 | GO:0007051 | spindle organization | 17626165 |
Hgene | CHD3 | GO:0007098 | centrosome cycle | 17626165 |
Tgene | RAD51C | GO:0006281 | DNA repair | 19451272 |
Tgene | RAD51C | GO:0006310 | DNA recombination | 19451272 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | ACC | TCGA-OR-A5KY-01A | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000380358 | ENST00000583539 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
In-frame | ENST00000380358 | ENST00000337432 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
5CDS-intron | ENST00000380358 | ENST00000487921 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
5CDS-intron | ENST00000380358 | ENST00000421782 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
In-frame | ENST00000358181 | ENST00000583539 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
In-frame | ENST00000358181 | ENST00000337432 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
5CDS-intron | ENST00000358181 | ENST00000487921 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
5CDS-intron | ENST00000358181 | ENST00000421782 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
In-frame | ENST00000330494 | ENST00000583539 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
In-frame | ENST00000330494 | ENST00000337432 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
5CDS-intron | ENST00000330494 | ENST00000487921 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
5CDS-intron | ENST00000330494 | ENST00000421782 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
intron-3CDS | ENST00000570758 | ENST00000583539 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
intron-3CDS | ENST00000570758 | ENST00000337432 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
intron-intron | ENST00000570758 | ENST00000487921 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
intron-intron | ENST00000570758 | ENST00000421782 | CHD3 | chr17 | 7797253 | + | RAD51C | chr17 | 56787220 | + |
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FusionProtFeatures for CHD3_RAD51C |
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Hgene | Tgene |
CHD3 | RAD51C |
Component of the histone deacetylase NuRD complex whichparticipates in the remodeling of chromatin by deacetylatinghistones. Required for anchoring centrosomal pericentrin in bothinterphase and mitosis, for spindle organization and centrosomeintegrity. {ECO:0000269|PubMed:17626165,ECO:0000269|PubMed:9804427}. | Essential for the homologous recombination (HR) pathwayof DNA repair. Involved in the homologous recombination repair(HRR) pathway of double-stranded DNA breaks arising during DNAreplication or induced by DNA-damaging agents. Part of the RAD21paralog protein complexes BCDX2 and CX3 which act at differentstages of the BRCA1-BRCA2-dependent HR pathway. Upon DNA damage,BCDX2 seems to act downstream of BRCA2 recruitment and upstream ofRAD51 recruitment; CX3 seems to act downstream of RAD51recruitment; both complexes bind predominantly to the intersectionof the four duplex arms of the Holliday junction (HJ) and tojunction of replication forks. The BCDX2 complex was originallyreported to bind single-stranded DNA, single-stranded gaps induplex DNA and specifically to nicks in duplex DNA. The BCDX2subcomplex RAD51B:RAD51C exhibits single-stranded DNA-dependentATPase activity suggesting an involvement in early stages of theHR pathway. Involved in RAD51 foci formation in response to DNAdamage suggesting an involvement in early stages of HR probably inthe invasion step. Has an early function in DNA repair infacilitating phosphorylation of the checkpoint kinase CHEK2 andthereby transduction of the damage signal, leading to cell cyclearrest and HR activation. Participates in branch migration and HJresolution and thus is important for processing HR intermediateslate in the DNA repair process; the function may be linked to theCX3 complex. Part of a PALB2-scaffolded HR complex containingBRCA2 and which is thought to play a role in DNA repair by HR.Protects RAD51 from ubiquitin-mediated degradation that isenhanced following DNA damage. Plays a role in regulatingmitochondrial DNA copy number under conditions of oxidative stressin the presence of RAD51 and XRCC3. Contributes to DNA cross-linkresistance, sister chromatid cohesion and genomic stability.Involved in maintaining centrosome number in mitosis.{ECO:0000269|PubMed:14716019, ECO:0000269|PubMed:16215984,ECO:0000269|PubMed:16395335, ECO:0000269|PubMed:19451272,ECO:0000269|PubMed:19783859, ECO:0000269|PubMed:20413593,ECO:0000269|PubMed:23108668, ECO:0000269|PubMed:23149936}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 206_221 | 308 | 2001 | Compositional bias | Note=Poly-Ala |
Hgene | CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 243_246 | 308 | 2001 | Compositional bias | Note=Poly-Pro |
Hgene | CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 206_221 | 308 | 1967 | Compositional bias | Note=Poly-Ala |
Hgene | CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 243_246 | 308 | 1967 | Compositional bias | Note=Poly-Pro |
Hgene | CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 206_221 | 367 | 2060 | Compositional bias | Note=Poly-Ala |
Hgene | CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 243_246 | 367 | 2060 | Compositional bias | Note=Poly-Pro |
Hgene | CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 355_358 | 367 | 2060 | Compositional bias | Note=Poly-Lys |
Tgene | >RAD51C | chr17:7797253 | chr17:56787220 | ENST00000337432 | + | 3 | 9 | 366_370 | 235 | 377 | Motif | Nuclear localization signal |
Tgene | >RAD51C | chr17:7797253 | chr17:56787220 | ENST00000421782 | + | 0 | 2 | 366_370 | -6 | 136 | Motif | Nuclear localization signal |
Tgene | >RAD51C | chr17:7797253 | chr17:56787220 | ENST00000421782 | + | 0 | 2 | 125_132 | -6 | 136 | Nucleotide binding | ATP |
Tgene | >RAD51C | chr17:7797253 | chr17:56787220 | ENST00000421782 | + | 0 | 2 | 1_126 | -6 | 136 | Region | Note=Required for Holliday junction resolution activity |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 355_358 | 308 | 2001 | Compositional bias | Note=Poly-Lys |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 434_446 | 308 | 2001 | Compositional bias | Note=Poly-Glu |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 697_703 | 308 | 2001 | Compositional bias | Note=Poly-Lys |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 355_358 | 308 | 1967 | Compositional bias | Note=Poly-Lys |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 434_446 | 308 | 1967 | Compositional bias | Note=Poly-Glu |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 697_703 | 308 | 1967 | Compositional bias | Note=Poly-Lys |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 434_446 | 367 | 2060 | Compositional bias | Note=Poly-Glu |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 697_703 | 367 | 2060 | Compositional bias | Note=Poly-Lys |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 1064_1229 | 308 | 2001 | Domain | Helicase C-terminal |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 494_594 | 308 | 2001 | Domain | Chromo 1 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 631_673 | 308 | 2001 | Domain | Chromo 2 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 748_932 | 308 | 2001 | Domain | Helicase ATP-binding |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 1064_1229 | 308 | 1967 | Domain | Helicase C-terminal |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 494_594 | 308 | 1967 | Domain | Chromo 1 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 631_673 | 308 | 1967 | Domain | Chromo 2 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 748_932 | 308 | 1967 | Domain | Helicase ATP-binding |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 1064_1229 | 367 | 2060 | Domain | Helicase C-terminal |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 494_594 | 367 | 2060 | Domain | Chromo 1 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 631_673 | 367 | 2060 | Domain | Chromo 2 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 748_932 | 367 | 2060 | Domain | Helicase ATP-binding |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 883_886 | 308 | 2001 | Motif | Note=DEAH box |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 883_886 | 308 | 1967 | Motif | Note=DEAH box |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 883_886 | 367 | 2060 | Motif | Note=DEAH box |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 761_768 | 308 | 2001 | Nucleotide binding | ATP |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 761_768 | 308 | 1967 | Nucleotide binding | ATP |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 761_768 | 367 | 2060 | Nucleotide binding | ATP |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 379_426 | 308 | 2001 | Zinc finger | PHD-type 1 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000330494 | + | 6 | 40 | 456_503 | 308 | 2001 | Zinc finger | PHD-type 2 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 379_426 | 308 | 1967 | Zinc finger | PHD-type 1 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000358181 | + | 6 | 39 | 456_503 | 308 | 1967 | Zinc finger | PHD-type 2 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 379_426 | 367 | 2060 | Zinc finger | PHD-type 1 |
Hgene | >CHD3 | chr17:7797253 | chr17:56787220 | ENST00000380358 | + | 6 | 40 | 456_503 | 367 | 2060 | Zinc finger | PHD-type 2 |
Tgene | RAD51C | chr17:7797253 | chr17:56787220 | ENST00000337432 | + | 3 | 9 | 125_132 | 235 | 377 | Nucleotide binding | ATP |
Tgene | RAD51C | chr17:7797253 | chr17:56787220 | ENST00000337432 | + | 3 | 9 | 1_126 | 235 | 377 | Region | Note=Required for Holliday junction resolution activity |
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FusionGeneSequence for CHD3_RAD51C |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_CHD3_ENST00000380358_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_479aa MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRHSPPGCHLFPPPPPPPPPLPPPPPPP PPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKG EGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAA AAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGG KRKKGGSVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWD >In-frame_CHD3_ENST00000380358_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_509aa MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRHSPPGCHLFPPPPPPPPPLPPPPPPP PPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKG EGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAA AAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGG KRKKGGSVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWD >In-frame_CHD3_ENST00000358181_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_420aa MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSES GGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKR RSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMT >In-frame_CHD3_ENST00000358181_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_450aa MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSES GGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKR RSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMT TKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEELX >In-frame_CHD3_ENST00000330494_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_420aa MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSES GGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKR RSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMT >In-frame_CHD3_ENST00000330494_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_450aa MKAADTVILWARSKNDQLRISFPPGLCWGDRMPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSES GGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKI PMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKR RSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMT TKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEELX |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_CHD3_ENST00000380358_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_1437nt ATGGCTTCCCCTCTGAGGGACGAGGAGGAGGAGGAGGAGGAGATGGTGGTGTCGGAGGAGGAAGAAGAGGAGGAAGAAGAGGGCGACGAG GAGGAGGAGGAGGAGGTGGAGGCGGCCGACGAGGACGATGAGGAGGACGACGACGAGGGAGTACTCGGGCGCGGGCCGGGCCACGACCGG GGCCGCGACCGCCACAGCCCCCCCGGCTGCCACCTCTTCCCGCCGCCGCCGCCGCCGCCGCCACCGCTGCCCCCGCCGCCGCCGCCCCCG CCGCCAGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAACAAG CCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGTGGG GGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAGGGG GAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTGTTC TCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATCCCA ATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCGGCG GCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCCGCC CTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGGCGG AGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGTGGC AAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTTCGT ACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACAACA AAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGGGAC >In-frame_CHD3_ENST00000380358_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_1527nt ATGGCTTCCCCTCTGAGGGACGAGGAGGAGGAGGAGGAGGAGATGGTGGTGTCGGAGGAGGAAGAAGAGGAGGAAGAAGAGGGCGACGAG GAGGAGGAGGAGGAGGTGGAGGCGGCCGACGAGGACGATGAGGAGGACGACGACGAGGGAGTACTCGGGCGCGGGCCGGGCCACGACCGG GGCCGCGACCGCCACAGCCCCCCCGGCTGCCACCTCTTCCCGCCGCCGCCGCCGCCGCCGCCACCGCTGCCCCCGCCGCCGCCGCCCCCG CCGCCAGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAACAAG CCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGTGGG GGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAGGGG GAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTGTTC TCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATCCCA ATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCGGCG GCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCCGCC CTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGGCGG AGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGTGGC AAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTTCGT ACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACAACA AAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGGGAC CGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAACCTCAGGGATTTAGAGAT >In-frame_CHD3_ENST00000358181_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_1260nt ATGAAGGCGGCAGACACTGTGATCCTGTGGGCAAGAAGTAAAAATGACCAGCTGAGGATTTCTTTTCCTCCAGGACTGTGTTGGGGTGAC AGGATGCCTGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAAC AAGCCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGT GGGGGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAG GGGGAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTG TTCTCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATC CCAATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCG GCGGCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCC GCCCTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGG CGGAGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGT GGCAAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTT CGTACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACA ACAAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGG GACCGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAAGTCAGTATTATTTGA >In-frame_CHD3_ENST00000358181_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_1350nt ATGAAGGCGGCAGACACTGTGATCCTGTGGGCAAGAAGTAAAAATGACCAGCTGAGGATTTCTTTTCCTCCAGGACTGTGTTGGGGTGAC AGGATGCCTGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAAC AAGCCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGT GGGGGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAG GGGGAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTG TTCTCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATC CCAATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCG GCGGCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCC GCCCTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGG CGGAGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGT GGCAAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTT CGTACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACA ACAAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGG GACCGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAACCTCAGGGATTTAGA GATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAA >In-frame_CHD3_ENST00000330494_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_1260nt ATGAAGGCGGCAGACACTGTGATCCTGTGGGCAAGAAGTAAAAATGACCAGCTGAGGATTTCTTTTCCTCCAGGACTGTGTTGGGGTGAC AGGATGCCTGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAAC AAGCCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGT GGGGGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAG GGGGAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTG TTCTCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATC CCAATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCG GCGGCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCC GCCCTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGG CGGAGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGT GGCAAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTT CGTACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACA ACAAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGG GACCGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAAGTCAGTATTATTTGA >In-frame_CHD3_ENST00000330494_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_1350nt ATGAAGGCGGCAGACACTGTGATCCTGTGGGCAAGAAGTAAAAATGACCAGCTGAGGATTTCTTTTCCTCCAGGACTGTGTTGGGGTGAC AGGATGCCTGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAAC AAGCCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGT GGGGGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAG GGGGAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTG TTCTCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATC CCAATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCG GCGGCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCC GCCCTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGG CGGAGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGT GGCAAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTT CGTACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACA ACAAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGG GACCGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAACCTCAGGGATTTAGA GATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_CHD3_ENST00000380358_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_1645nt GATGGCTTCCCCTCTGAGGGACGAGGAGGAGGAGGAGGAGGAGATGGTGGTGTCGGAGGAGGAAGAAGAGGAGGAAGAAGAGGGCGACGA GGAGGAGGAGGAGGAGGTGGAGGCGGCCGACGAGGACGATGAGGAGGACGACGACGAGGGAGTACTCGGGCGCGGGCCGGGCCACGACCG GGGCCGCGACCGCCACAGCCCCCCCGGCTGCCACCTCTTCCCGCCGCCGCCGCCGCCGCCGCCACCGCTGCCCCCGCCGCCGCCGCCCCC GCCGCCAGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAACAA GCCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGTGG GGGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAGGG GGAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTGTT CTCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATCCC AATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCGGC GGCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCCGC CCTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGGCG GAGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGTGG CAAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTTCG TACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACAAC AAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGGGA CCGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAAGTCAGTATTATTTGATT AGAGTGGGATTTTGATATTGATGGGCGGTAATTATCTAAAGAGAGAATTTACAACTTGCTTCTGTCAACTTCTGTAGGCAGCAAGCATAT TTGAGGACAGCTTTTGATGCTTAGAACATTGTCCCCAAAATAGTAGTATATACAGAATATTGTAGTCACAAATGGACTGAAATTTATTCT >In-frame_CHD3_ENST00000380358_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_1648nt GATGGCTTCCCCTCTGAGGGACGAGGAGGAGGAGGAGGAGGAGATGGTGGTGTCGGAGGAGGAAGAAGAGGAGGAAGAAGAGGGCGACGA GGAGGAGGAGGAGGAGGTGGAGGCGGCCGACGAGGACGATGAGGAGGACGACGACGAGGGAGTACTCGGGCGCGGGCCGGGCCACGACCG GGGCCGCGACCGCCACAGCCCCCCCGGCTGCCACCTCTTCCCGCCGCCGCCGCCGCCGCCGCCACCGCTGCCCCCGCCGCCGCCGCCCCC GCCGCCAGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAACAA GCCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGTGG GGGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAGGG GGAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTGTT CTCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATCCC AATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCGGC GGCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCCGC CCTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGGCG GAGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGTGG CAAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTTCG TACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACAAC AAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGGGA CCGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAACCTCAGGGATTTAGAGA TACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAACC CAGAAACAAATCTCAAAGTGTACAAATTTATTGATGTTGTGAAATCAATGTGTACAAGTGGACTTGTTACCTTAAAGTATAAATAAACAC >In-frame_CHD3_ENST00000358181_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_1677nt ATCTTTGTTTGGGTCTCCCATACTGCGTATAGATGAATGGGTCAGGATATCTGGAACAAAATATGGAGGTGAAGGGTGAGATCGGGAAAC AAAGGGTATGGCCCCCTAGTTCCCAAAGGGAGCAGGGAGATGGGAATAGAATTGAAGGTAGGTTTTAGGCTACTTGGGAGGAGGAATATT TAGGTAATTGTGGAGACTTTCTCCTGTGTGATGAAGGCGGCAGACACTGTGATCCTGTGGGCAAGAAGTAAAAATGACCAGCTGAGGATT TCTTTTCCTCCAGGACTGTGTTGGGGTGACAGGATGCCTGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGA AAACGAGGACCCAAGAAGCAGAAGGAGAACAAGCCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAG CGAGATGAGTACCGGGAGAAGTCAGAGAGTGGGGGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAA AAGGAGAAGAAGACAAAGCGGCGGAAAAAGGGGGAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTG ACCTGGGGCCTGGAGGATGTGGAGCATGTGTTCTCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGG CCCCTAATTGCTAAGAAGAATCCTAAGATCCCAATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAAC CCCTTCAAGGGGTCAGCAGCTGCTGTGGCGGCGGCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCG GCCACCCCCATAGCACCCTCCGGACCCCCCGCCCTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACC AAAGAGGGCAAAGGTCCAGGCCATAAGAGGCGGAGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCA CCACTCAAAATAAAACTAGGGCTTCTGGGTGGCAAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCA TTTCGTCATGACCTAGATGACCTGTCTCTTCGTACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGA TTAGCTGTAATTTTAACCAATCAGATGACAACAAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACAT GCTGCTACAATACGGCTAATCTTTCATTGGGACCGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTA CTGTTTCAAATCAAAGTCAGTATTATTTGATTAGAGTGGGATTTTGATATTGATGGGCGGTAATTATCTAAAGAGAGAATTTACAACTTG CTTCTGTCAACTTCTGTAGGCAGCAAGCATATTTGAGGACAGCTTTTGATGCTTAGAACATTGTCCCCAAAATAGTAGTATATACAGAAT >In-frame_CHD3_ENST00000358181_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_1680nt ATCTTTGTTTGGGTCTCCCATACTGCGTATAGATGAATGGGTCAGGATATCTGGAACAAAATATGGAGGTGAAGGGTGAGATCGGGAAAC AAAGGGTATGGCCCCCTAGTTCCCAAAGGGAGCAGGGAGATGGGAATAGAATTGAAGGTAGGTTTTAGGCTACTTGGGAGGAGGAATATT TAGGTAATTGTGGAGACTTTCTCCTGTGTGATGAAGGCGGCAGACACTGTGATCCTGTGGGCAAGAAGTAAAAATGACCAGCTGAGGATT TCTTTTCCTCCAGGACTGTGTTGGGGTGACAGGATGCCTGATAAGGATGACATTCGGCTGCTGCCGTCAGCATTGGGTGTGAAGAAGAGA AAACGAGGACCCAAGAAGCAGAAGGAGAACAAGCCAGGAAAACCCCGAAAACGCAAGAAGCGTGACAGTGAGGAGGAATTTGGTTCTGAG CGAGATGAGTACCGGGAGAAGTCAGAGAGTGGGGGCAGTGAATATGGAACCGGACCGGGTCGGAAACGAAGAAGGAAGCACCGAGAAAAA AAGGAGAAGAAGACAAAGCGGCGGAAAAAGGGGGAGGGAGATGGGGGGCAAAAGCAAGTGGAACAGAAGTCATCAGCAACTCTGCTTCTG ACCTGGGGCCTGGAGGATGTGGAGCATGTGTTCTCTGAGGAGGATTACCACACGCTCACCAACTACAAAGCCTTCAGCCAGTTCATGAGG CCCCTAATTGCTAAGAAGAATCCTAAGATCCCAATGTCTAAGATGATGACCATCCTTGGGGCCAAATGGAGAGAGTTCAGTGCCAACAAC CCCTTCAAGGGGTCAGCAGCTGCTGTGGCGGCGGCAGCGGCAGCAGCAGCAGCAGCTGTAGCTGAGCAGGTGTCAGCTGCTGTCTCGTCG GCCACCCCCATAGCACCCTCCGGACCCCCCGCCCTTCCACCACCCCCTGCTGCTGATATCCAGCCCCCACCCATCCGAAGAGCCAAAACC AAAGAGGGCAAAGGTCCAGGCCATAAGAGGCGGAGTAAGAGCCCCCGAGTGCCTGATGGACGCAAGAAGCTTCGGGGAAAGAAAATGGCA CCACTCAAAATAAAACTAGGGCTTCTGGGTGGCAAGAGGAAGAAAGGAGGCTCGGTTCGACTAGTGATAGTGGATGGTATTGCTTTTCCA TTTCGTCATGACCTAGATGACCTGTCTCTTCGTACTCGGTTATTAAATGGCCTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGA TTAGCTGTAATTTTAACCAATCAGATGACAACAAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAGGGGAAAGTTGGGGACAT GCTGCTACAATACGGCTAATCTTTCATTGGGACCGAAAGCAAAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTA CTGTTTCAAATCAAACCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAA CGGTCACGAGACCCAGAGGAAGAATTATAACCCAGAAACAAATCTCAAAGTGTACAAATTTATTGATGTTGTGAAATCAATGTGTACAAG >In-frame_CHD3_ENST00000330494_chr17_7797253_+_RAD51C_ENST00000583539_chr17_56787220_+_1617nt ATATGGAGGTGAAGGGTGAGATCGGGAAACAAAGGGTATGGCCCCCTAGTTCCCAAAGGGAGCAGGGAGATGGGAATAGAATTGAAGGTA GGTTTTAGGCTACTTGGGAGGAGGAATATTTAGGTAATTGTGGAGACTTTCTCCTGTGTGATGAAGGCGGCAGACACTGTGATCCTGTGG GCAAGAAGTAAAAATGACCAGCTGAGGATTTCTTTTCCTCCAGGACTGTGTTGGGGTGACAGGATGCCTGATAAGGATGACATTCGGCTG CTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAACAAGCCAGGAAAACCCCGAAAACGCAAGAAG CGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGTGGGGGCAGTGAATATGGAACCGGACCGGGT CGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAGGGGGAGGGAGATGGGGGGCAAAAGCAAGTG GAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTGTTCTCTGAGGAGGATTACCACACGCTCACC AACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATCCCAATGTCTAAGATGATGACCATCCTTGGG GCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCGGCGGCAGCGGCAGCAGCAGCAGCAGCTGTA GCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCCGCCCTTCCACCACCCCCTGCTGCTGATATC CAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGGCGGAGTAAGAGCCCCCGAGTGCCTGATGGA CGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGTGGCAAGAGGAAGAAAGGAGGCTCGGTTCGA CTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTTCGTACTCGGTTATTAAATGGCCTAGCCCAG CAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACAACAAAGATTGATAGAAATCAGGCCTTGCTT GTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGGGACCGAAAGCAAAGGTTGGCAACATTGTAC AAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAAGTCAGTATTATTTGATTAGAGTGGGATTTTGATATTGATGGGCGG TAATTATCTAAAGAGAGAATTTACAACTTGCTTCTGTCAACTTCTGTAGGCAGCAAGCATATTTGAGGACAGCTTTTGATGCTTAGAACA >In-frame_CHD3_ENST00000330494_chr17_7797253_+_RAD51C_ENST00000337432_chr17_56787220_+_1620nt ATATGGAGGTGAAGGGTGAGATCGGGAAACAAAGGGTATGGCCCCCTAGTTCCCAAAGGGAGCAGGGAGATGGGAATAGAATTGAAGGTA GGTTTTAGGCTACTTGGGAGGAGGAATATTTAGGTAATTGTGGAGACTTTCTCCTGTGTGATGAAGGCGGCAGACACTGTGATCCTGTGG GCAAGAAGTAAAAATGACCAGCTGAGGATTTCTTTTCCTCCAGGACTGTGTTGGGGTGACAGGATGCCTGATAAGGATGACATTCGGCTG CTGCCGTCAGCATTGGGTGTGAAGAAGAGAAAACGAGGACCCAAGAAGCAGAAGGAGAACAAGCCAGGAAAACCCCGAAAACGCAAGAAG CGTGACAGTGAGGAGGAATTTGGTTCTGAGCGAGATGAGTACCGGGAGAAGTCAGAGAGTGGGGGCAGTGAATATGGAACCGGACCGGGT CGGAAACGAAGAAGGAAGCACCGAGAAAAAAAGGAGAAGAAGACAAAGCGGCGGAAAAAGGGGGAGGGAGATGGGGGGCAAAAGCAAGTG GAACAGAAGTCATCAGCAACTCTGCTTCTGACCTGGGGCCTGGAGGATGTGGAGCATGTGTTCTCTGAGGAGGATTACCACACGCTCACC AACTACAAAGCCTTCAGCCAGTTCATGAGGCCCCTAATTGCTAAGAAGAATCCTAAGATCCCAATGTCTAAGATGATGACCATCCTTGGG GCCAAATGGAGAGAGTTCAGTGCCAACAACCCCTTCAAGGGGTCAGCAGCTGCTGTGGCGGCGGCAGCGGCAGCAGCAGCAGCAGCTGTA GCTGAGCAGGTGTCAGCTGCTGTCTCGTCGGCCACCCCCATAGCACCCTCCGGACCCCCCGCCCTTCCACCACCCCCTGCTGCTGATATC CAGCCCCCACCCATCCGAAGAGCCAAAACCAAAGAGGGCAAAGGTCCAGGCCATAAGAGGCGGAGTAAGAGCCCCCGAGTGCCTGATGGA CGCAAGAAGCTTCGGGGAAAGAAAATGGCACCACTCAAAATAAAACTAGGGCTTCTGGGTGGCAAGAGGAAGAAAGGAGGCTCGGTTCGA CTAGTGATAGTGGATGGTATTGCTTTTCCATTTCGTCATGACCTAGATGACCTGTCTCTTCGTACTCGGTTATTAAATGGCCTAGCCCAG CAAATGATCAGCCTTGCAAATAATCACAGATTAGCTGTAATTTTAACCAATCAGATGACAACAAAGATTGATAGAAATCAGGCCTTGCTT GTTCCTGCATTAGGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGGGACCGAAAGCAAAGGTTGGCAACATTGTAC AAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAACCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTG CAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAACCCAGAAACAAATCTCAAAGTGTACAAATT TATTGATGTTGTGAAATCAATGTGTACAAGTGGACTTGTTACCTTAAAGTATAAATAAACACACTATGGCATGAATGAATCCAGATCATA |
Top |
FusionGenePPI for CHD3_RAD51C |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CHD3 | UBE2I, SERBP1, MBD3L1, HDAC2, MTA2, MBD2, HABP4, HDAC1, TP53, TP73, SUMO1, SMARCA5, RAD21, ADH5, ATPIF1, CASP6, FBP2, HSPH1, PCMT1, SERF2, TSPAN6, CASP8, CPE, C4orf17, CTTN, IVNS1ABP, THOC7, PRG2, PTPRS, SGSM2, SAT1, SDCCAG3, TNFRSF14, UBA3, XRCC4, SRRT, FAM134A, YAE1D1, IMMT, GPS2, IK, KIF15, LUC7L2, MAFG, MAN2A2, CRCT1, PAICS, PSME1, RPL29, SAFB, TRIM28, TTR, TXNDC9, BHLHE40, CREB1, FUBP1, RAD51, PUF60, SIRT6, SLC27A6, CSTF2, PTN, SUMO2, CHD6, HIST1H3A, NAB2, MTA3, SIN3A, SMARCA2, TAF6, MTA1, BCL6, HSF1, CSNK2A1, PCNT, MYB, DDX5, JUN, HIC1, CHD4, CHD3, RBBP4, KDM1A, TAL1, GSK3B, UROD, AIMP2, TNNT1, FABP4, HSD17B10, RGS2, CTBP1, PLK4, NR1H2, TSC22D1, NR4A1, GADD45A, KDM5B, TWIST1, HTT, GIT1, BARD1, PRPF40A, VIM, LRIF1, PIAS4, ZHX1, NEFL, TCERG1, KPNB1, IKZF1, MBD3, RBBP7, GATAD2A, SMARCC2, HDAC3, UBC, SIRT1, SKIL, SOX2, LGR4, ENO1, SHMT2, MOV10, NXF1, PHF6, CCDC8, RNF2, BMI1, ZNF219, PHF20L1, GATAD2B, CD2BP2, OTUD6B, SNRNP40, CPSF1, METAP2, MX1, KMT2A, SATB1, RPL10, CDK2AP1, PSMD14, HIST1H2BB, MCM2, SNW1, HYPK, HSFY1, FOXA1, TRIM25, UHRF2, BRD1, ZNF827 | RAD51C | RAD51, RAD51B, XRCC3, XRCC2, RAD51D, APP, SWSAP1, BSG, SPACA1, IL12RB1, CBWD1, TGOLN2, WNT4, THBS3, KLHL10, PTPN9, CCDC140, EFNB3, DKKL1, FAM174A, ADAMTS4, HENMT1, HELQ, PALB2, BRCA2, TRIM25 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Tgene | RAD51C | chr17:7797253 | chr17:56787220 | ENST00000421782 | + | 0 | 2 | 79_136 | -6 | 136 | RAD51B%2C RAD51D and XRCC3 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | RAD51C | chr17:7797253 | chr17:56787220 | ENST00000337432 | + | 3 | 9 | 79_136 | 235 | 377 | RAD51B%2C RAD51D and XRCC3 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CHD3_RAD51C |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CHD3_RAD51C |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CHD3 | C0036920 | Sezary Syndrome | 1 | CTD_human |
Tgene | RAD51C | C3150659 | BREAST-OVARIAN CANCER, FAMILIAL, SUSCEPTIBILITY TO, 3 | 3 | CTD_human;UNIPROT |
Tgene | RAD51C | C3150653 | FANCONI ANEMIA, COMPLEMENTATION GROUP O | 2 | CTD_human;UNIPROT |
Tgene | RAD51C | C0015625 | Fanconi Anemia | 1 | CTD_human;ORPHANET |
Tgene | RAD51C | C0919267 | ovarian neoplasm | 1 | CTD_human |
Tgene | RAD51C | C1458155 | Mammary Neoplasms | 1 | CTD_human |