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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 6304

FusionGeneSummary for CD9_PPP3CA

check button Fusion gene summary
Fusion gene informationFusion gene name: CD9_PPP3CA
Fusion gene ID: 6304
HgeneTgene
Gene symbol

CD9

PPP3CA

Gene ID

928

5530

Gene nameCD9 moleculeprotein phosphatase 3 catalytic subunit alpha
SynonymsBTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29CALN|CALNA|CALNA1|CCN1|CNA1|IECEE|IECEE1|PPP2B
Cytomap

12p13.31

4q24

Type of geneprotein-codingprotein-coding
DescriptionCD9 antigen5H9 antigenBA-2/p24 antigenCD9 antigen (p24)antigen CD9cell growth-inhibiting gene 2 proteinleukocyte antigen MIC3motility related protein-1tetraspanin-29serine/threonine-protein phosphatase 2B catalytic subunit alpha isoformCAM-PRP catalytic subunitcalcineurin A alphacalmodulin-dependent calcineurin A subunit alpha isoformprotein phosphatase 2B, catalytic subunit, alpha isoformprotein phosphatase 3 (
Modification date2018052320180523
UniProtAcc

P21926

Q08209

Ensembl transtripts involved in fusion geneENST00000382518, ENST00000009180, 
ENST00000382515, ENST00000481267, 
ENST00000512215, ENST00000394854, 
ENST00000323055, ENST00000394853, 
ENST00000507176, ENST00000523694, 
ENST00000510292, 
Fusion gene scores* DoF score7 X 7 X 5=2458 X 5 X 3=120
# samples 98
** MAII scorelog2(9/245*10)=-1.4447848426729
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(8/120*10)=-0.584962500721156
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CD9 [Title/Abstract] AND PPP3CA [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCD9

GO:0007155

cell adhesion

7511626

HgeneCD9

GO:0007342

fusion of sperm to egg plasma membrane involved in single fertilization

14575715

HgeneCD9

GO:0051271

negative regulation of cellular component movement

8478605

HgeneCD9

GO:0090331

negative regulation of platelet aggregation

18541721

TgenePPP3CA

GO:0006470

protein dephosphorylation

18815128|19154138

TgenePPP3CA

GO:0033173

calcineurin-NFAT signaling cascade

19154138|22688515

TgenePPP3CA

GO:0035690

cellular response to drug

11005320

TgenePPP3CA

GO:0045944

positive regulation of transcription by RNA polymerase II

22688515

TgenePPP3CA

GO:0051592

response to calcium ion

18815128


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVPRADTCGA-KK-A6E1-01ACD9chr12

6347425

+PPP3CAchr4

102269435

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000382518ENST00000512215CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382518ENST00000394854CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382518ENST00000323055CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382518ENST00000394853CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382518ENST00000507176CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382518ENST00000523694CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382518ENST00000510292CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000009180ENST00000512215CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000009180ENST00000394854CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000009180ENST00000323055CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000009180ENST00000394853CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000009180ENST00000507176CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000009180ENST00000523694CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000009180ENST00000510292CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382515ENST00000512215CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382515ENST00000394854CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382515ENST00000323055CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382515ENST00000394853CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382515ENST00000507176CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382515ENST00000523694CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000382515ENST00000510292CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000481267ENST00000512215CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000481267ENST00000394854CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000481267ENST00000323055CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000481267ENST00000394853CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000481267ENST00000507176CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000481267ENST00000523694CD9chr12

6347425

+PPP3CAchr4

102269435

-
5CDS-intronENST00000481267ENST00000510292CD9chr12

6347425

+PPP3CAchr4

102269435

-

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FusionProtFeatures for CD9_PPP3CA


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CD9

P21926

PPP3CA

Q08209

Involved in platelet activation and aggregation.Regulates paranodal junction formation. Involved in cell adhesion,cell motility and tumor metastasis. Required for sperm-egg fusion.{ECO:0000269|PubMed:14575715, ECO:0000269|PubMed:7511626,ECO:0000269|PubMed:8478605}. Calcium-dependent, calmodulin-stimulated proteinphosphatase which plays an essential role in the transduction ofintracellular Ca(2+)-mediated signals (PubMed:15671020,PubMed:18838687, PubMed:19154138, PubMed:23468591). Many of thesubstrates contain a PxIxIT motif and/or a LxVP motif(PubMed:17498738, PubMed:17502104, PubMed:23468591,PubMed:27974827, PubMed:22343722). In response to increased Ca(2+)levels, dephosphorylates and activates phosphatase SSH1 whichresults in cofilin dephosphorylation (PubMed:15671020). Inresponse to increased Ca(2+) levels following mitochondrialdepolarization, dephosphorylates DNM1L inducing DNM1Ltranslocation to the mitochondrion (PubMed:18838687).Dephosphorylates heat shock protein HSPB1 (By similarity).Dephosphorylates and activates transcription factor NFATC1(PubMed:19154138). In response to increased Ca(2+) levels,regulates NFAT-mediated transcription probably bydephosphorylating NFAT and promoting its nuclear translocation(PubMed:26248042). Dephosphorylates and inactivates transcriptionfactor ELK1 (PubMed:19154138). Dephosphorylates DARPP32(PubMed:19154138). {ECO:0000250|UniProtKB:P48452,ECO:0000269|PubMed:15671020, ECO:0000269|PubMed:17498738,ECO:0000269|PubMed:17502104, ECO:0000269|PubMed:18838687,ECO:0000269|PubMed:19154138, ECO:0000269|PubMed:22343722,ECO:0000269|PubMed:23468591, ECO:0000269|PubMed:26248042,ECO:0000269|PubMed:27974827}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CD9_PPP3CA


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CD9_PPP3CA


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
CD9CD82, KIT, CD63, CD81, ITGB1, IGSF8, ITGA3, CD46, ITGA5, TSPAN4, PTGFRN, CD53, CD19, CD36, SERPINH1, PRKCA, ELAVL1, LGALS3BP, ATP6V1B1, CLN8, VKORC1, ADRB2PPP3CAC16orf74, PPIA, RCAN1, ADRB2, RCAN2, AKAP5, BCL2, CABIN1, MYOZ2, MYOZ1, IRF2, GRB2, AKT1, PHLPP2, PTEN, PSMA6, PDE4D, KCNIP3, TRAF3, PPP3R1, MRI1, RHOC, MAPK7, HNRNPH1, P3H1, SETSIP, MAT2B, NASP, NRD1, PDIA6, PFDN5, PPP2R2A, TNPO3, TNPO1, TSN, VBP1, XPO5, MARCH7, CEP76, TP53, VCP, JUN, FAM122A, RASSF2, PDHB, RCAN3, NFATC4, SIK3, ARFIP1, C6orf211, PSMD9, CRTC2, LBH, NCAPG, TUBA1B, DEFA1, TMEM200A, SMPD3, NFATC1, KLRG2, AATK, FGFR4, RYK, PTK7


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CD9_PPP3CA


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CD9_PPP3CA


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCD9C0007131Non-Small Cell Lung Carcinoma1CTD_human
HgeneCD9C0009404Colorectal Neoplasms1CTD_human
HgeneCD9C0017636Glioblastoma1CTD_human
HgeneCD9C0023467Leukemia, Myelocytic, Acute1CTD_human
HgeneCD9C0023890Liver Cirrhosis1CTD_human
HgeneCD9C0027658Neoplasms, Germ Cell and Embryonal1CTD_human
HgeneCD9C0027746Nerve Degeneration1CTD_human
HgeneCD9C0033578Prostatic Neoplasms1CTD_human
TgenePPP3CAC0019202Hepatolenticular Degeneration1CTD_human
TgenePPP3CAC0030305Pancreatitis1CTD_human
TgenePPP3CAC0033578Prostatic Neoplasms1CTD_human
TgenePPP3CAC0039584Testicular Diseases1CTD_human
TgenePPP3CAC0149721Left Ventricular Hypertrophy1CTD_human
TgenePPP3CAC0152013Adenocarcinoma of lung (disorder)1CTD_human