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Fusion gene ID: 6171 |
FusionGeneSummary for CD34_DEPDC1B |
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Fusion gene information | Fusion gene name: CD34_DEPDC1B | Fusion gene ID: 6171 | Hgene | Tgene | Gene symbol | CD34 | DEPDC1B | Gene ID | 947 | 55789 |
Gene name | CD34 molecule | DEP domain containing 1B | |
Synonyms | - | BRCC3|XTP1 | |
Cytomap | 1q32.2 | 5q12.1 | |
Type of gene | protein-coding | protein-coding | |
Description | hematopoietic progenitor cell antigen CD34CD34 antigen | DEP domain-containing protein 1BHBV X-transactivated gene 8 proteinHBV XAg-transactivated protein 8HBxAg transactivated protein 1breast cancer cell 3 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P28906 | Q8WUY9 | |
Ensembl transtripts involved in fusion gene | ENST00000485761, ENST00000367036, ENST00000310833, ENST00000356522, ENST00000537704, | ENST00000265036, ENST00000453022, ENST00000545085, ENST00000509006, | |
Fusion gene scores | * DoF score | 4 X 4 X 1=16 | 2 X 4 X 4=32 |
# samples | 5 | 8 | |
** MAII score | log2(5/16*10)=1.64385618977472 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(8/32*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CD34 [Title/Abstract] AND DEPDC1B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CD34 | GO:0001894 | tissue homeostasis | 12939361 |
Hgene | CD34 | GO:0001935 | endothelial cell proliferation | 21835908 |
Hgene | CD34 | GO:0008217 | regulation of blood pressure | 17505307 |
Hgene | CD34 | GO:0030195 | negative regulation of blood coagulation | 17505307 |
Hgene | CD34 | GO:0032720 | negative regulation of tumor necrosis factor production | 17505307 |
Hgene | CD34 | GO:0032733 | positive regulation of interleukin-10 production | 17505307 |
Hgene | CD34 | GO:0038001 | paracrine signaling | 21835908 |
Hgene | CD34 | GO:0042482 | positive regulation of odontogenesis | 12939361 |
Hgene | CD34 | GO:0045019 | negative regulation of nitric oxide biosynthetic process | 17505307 |
Hgene | CD34 | GO:0045766 | positive regulation of angiogenesis | 12939361|21835908 |
Hgene | CD34 | GO:0071636 | positive regulation of transforming growth factor beta production | 17505307 |
Hgene | CD34 | GO:0071657 | positive regulation of granulocyte colony-stimulating factor production | 9815891 |
Hgene | CD34 | GO:0071971 | extracellular exosome assembly | 21835908 |
Hgene | CD34 | GO:0098609 | cell-cell adhesion | 15249540 |
Hgene | CD34 | GO:1900035 | negative regulation of cellular response to heat | 17505307 |
Hgene | CD34 | GO:1900038 | negative regulation of cellular response to hypoxia | 17505307 |
Hgene | CD34 | GO:1900168 | positive regulation of glial cell-derived neurotrophic factor secretion | 17505307 |
Hgene | CD34 | GO:1901215 | negative regulation of neuron death | 17505307 |
Hgene | CD34 | GO:2001214 | positive regulation of vasculogenesis | 12939361 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AI394178 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000485761 | ENST00000265036 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000485761 | ENST00000453022 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000485761 | ENST00000545085 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000485761 | ENST00000509006 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000367036 | ENST00000265036 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000367036 | ENST00000453022 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000367036 | ENST00000545085 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000367036 | ENST00000509006 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000310833 | ENST00000265036 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000310833 | ENST00000453022 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000310833 | ENST00000545085 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000310833 | ENST00000509006 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000356522 | ENST00000265036 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000356522 | ENST00000453022 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000356522 | ENST00000545085 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000356522 | ENST00000509006 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000537704 | ENST00000265036 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000537704 | ENST00000453022 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000537704 | ENST00000545085 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
intron-intron | ENST00000537704 | ENST00000509006 | CD34 | chr1 | 208060067 | + | DEPDC1B | chr5 | 59895934 | + |
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FusionProtFeatures for CD34_DEPDC1B |
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Hgene | Tgene |
CD34 | DEPDC1B |
Possible adhesion molecule with a role in earlyhematopoiesis by mediating the attachment of stem cells to thebone marrow extracellular matrix or directly to stromal cells.Could act as a scaffold for the attachment of lineage specificglycans, allowing stem cells to bind to lectins expressed bystromal cells or other marrow components. Presents carbohydrateligands to selectins. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CD34_DEPDC1B |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CD34_DEPDC1B |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CD34_DEPDC1B |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CD34_DEPDC1B |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CD34 | C0007621 | Neoplastic Cell Transformation | 1 | CTD_human |
Hgene | CD34 | C0033975 | Psychotic Disorders | 1 | PSYGENET |
Hgene | CD34 | C0041696 | Unipolar Depression | 1 | PSYGENET |
Hgene | CD34 | C0349204 | Nonorganic psychosis | 1 | PSYGENET |
Hgene | CD34 | C1269683 | Major Depressive Disorder | 1 | PSYGENET |