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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 6110

FusionGeneSummary for CCT4_CCT4

check button Fusion gene summary
Fusion gene informationFusion gene name: CCT4_CCT4
Fusion gene ID: 6110
HgeneTgene
Gene symbol

CCT4

CCT4

Gene ID

10575

10575

Gene namechaperonin containing TCP1 subunit 4chaperonin containing TCP1 subunit 4
SynonymsCCT-DELTA|Cctd|SRBCCT-DELTA|Cctd|SRB
Cytomap

2p15

2p15

Type of geneprotein-codingprotein-coding
DescriptionT-complex protein 1 subunit deltaTCP-1-deltachaperonin containing TCP1, subunit 4 (delta)chaperonin containing t-complex polypeptide 1, delta subunitstimulator of TAR RNA-bindingT-complex protein 1 subunit deltaTCP-1-deltachaperonin containing TCP1, subunit 4 (delta)chaperonin containing t-complex polypeptide 1, delta subunitstimulator of TAR RNA-binding
Modification date2018052320180523
UniProtAcc

P50991

P50991

Ensembl transtripts involved in fusion geneENST00000394440, ENST00000461540, 
ENST00000544079, ENST00000544185, 
ENST00000538252, 		ENST00000394440, 
ENST00000461540, ENST00000544079, 
ENST00000544185, ENST00000538252, 
Fusion gene scores* DoF score4 X 5 X 2=405 X 6 X 4=120
# samples 56
** MAII scorelog2(5/40*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0		log2(6/120*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CCT4 [Title/Abstract] AND CCT4 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1CB243441CCT4chr2

62095709

+CCT4chr2

62096663

-
ChiTaRS3.1BM918916CCT4chr2

62100169

-CCT4chr2

62099409

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000394440ENST00000394440CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000394440ENST00000461540CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000394440ENST00000544079CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000394440ENST00000544185CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000394440ENST00000538252CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-3CDSENST00000461540ENST00000394440CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000461540ENST00000461540CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000461540ENST00000544079CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000461540ENST00000544185CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000461540ENST00000538252CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-3CDSENST00000544079ENST00000394440CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000544079ENST00000461540CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000544079ENST00000544079CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000544079ENST00000544185CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000544079ENST00000538252CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-3CDSENST00000544185ENST00000394440CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000544185ENST00000461540CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000544185ENST00000544079CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000544185ENST00000544185CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000544185ENST00000538252CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-3CDSENST00000538252ENST00000394440CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000538252ENST00000461540CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000538252ENST00000544079CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000538252ENST00000544185CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-5UTRENST00000538252ENST00000538252CCT4chr2

62095709

+CCT4chr2

62096663

-
intron-3CDSENST00000394440ENST00000394440CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000394440ENST00000461540CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000394440ENST00000544079CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000394440ENST00000544185CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000394440ENST00000538252CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-3CDSENST00000461540ENST00000394440CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000461540ENST00000461540CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000461540ENST00000544079CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000461540ENST00000544185CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000461540ENST00000538252CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-3CDSENST00000544079ENST00000394440CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000544079ENST00000461540CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000544079ENST00000544079CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000544079ENST00000544185CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000544079ENST00000538252CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-3CDSENST00000544185ENST00000394440CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000544185ENST00000461540CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000544185ENST00000544079CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000544185ENST00000544185CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000544185ENST00000538252CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-3CDSENST00000538252ENST00000394440CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000538252ENST00000461540CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000538252ENST00000544079CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000538252ENST00000544185CCT4chr2

62100169

-CCT4chr2

62099409

+
intron-intronENST00000538252ENST00000538252CCT4chr2

62100169

-CCT4chr2

62099409

+

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FusionProtFeatures for CCT4_CCT4


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CCT4

P50991

CCT4

P50991

Molecular chaperone; assists the folding of proteinsupon ATP hydrolysis. As part of the BBS/CCT complex may play arole in the assembly of BBSome, a complex involved in ciliogenesisregulating transports vesicles to the cilia. Known to play a role,in vitro, in the folding of actin and tubulin.{ECO:0000269|PubMed:20080638}. Molecular chaperone; assists the folding of proteinsupon ATP hydrolysis. As part of the BBS/CCT complex may play arole in the assembly of BBSome, a complex involved in ciliogenesisregulating transports vesicles to the cilia. Known to play a role,in vitro, in the folding of actin and tubulin.{ECO:0000269|PubMed:20080638}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CCT4_CCT4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CCT4_CCT4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CCT4_CCT4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CCT4_CCT4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource