![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 6019 |
FusionGeneSummary for CCNI_MRPL1 |
![]() |
Fusion gene information | Fusion gene name: CCNI_MRPL1 | Fusion gene ID: 6019 | Hgene | Tgene | Gene symbol | CCNI | MRPL1 | Gene ID | 10983 | 65008 |
Gene name | cyclin I | mitochondrial ribosomal protein L1 | |
Synonyms | CCNI1|CYC1|CYI | BM022|L1MT|MRP-L1 | |
Cytomap | 4q21.1 | 4q21.1 | |
Type of gene | protein-coding | protein-coding | |
Description | cyclin-Icyclin ITI | 39S ribosomal protein L1, mitochondrialmitochondrial large ribosomal subunit protein uL1m | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q14094 | Q9BYD6 | |
Ensembl transtripts involved in fusion gene | ENST00000237654, ENST00000537948, ENST00000504697, | ENST00000315567, ENST00000506674, | |
Fusion gene scores | * DoF score | 4 X 3 X 3=36 | 4 X 3 X 4=48 |
# samples | 4 | 5 | |
** MAII score | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/48*10)=0.0588936890535686 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CCNI [Title/Abstract] AND MRPL1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LUSC | TCGA-85-8351-01A | CCNI | chr4 | 77996625 | - | MRPL1 | chr4 | 78870951 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000237654 | ENST00000315567 | CCNI | chr4 | 77996625 | - | MRPL1 | chr4 | 78870951 | + |
5UTR-intron | ENST00000237654 | ENST00000506674 | CCNI | chr4 | 77996625 | - | MRPL1 | chr4 | 78870951 | + |
In-frame | ENST00000537948 | ENST00000315567 | CCNI | chr4 | 77996625 | - | MRPL1 | chr4 | 78870951 | + |
5CDS-intron | ENST00000537948 | ENST00000506674 | CCNI | chr4 | 77996625 | - | MRPL1 | chr4 | 78870951 | + |
intron-3CDS | ENST00000504697 | ENST00000315567 | CCNI | chr4 | 77996625 | - | MRPL1 | chr4 | 78870951 | + |
intron-intron | ENST00000504697 | ENST00000506674 | CCNI | chr4 | 77996625 | - | MRPL1 | chr4 | 78870951 | + |
Top |
FusionProtFeatures for CCNI_MRPL1 |
![]() |
Hgene | Tgene |
CCNI | MRPL1 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for CCNI_MRPL1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_CCNI_ENST00000537948_chr4_77996625_-_MRPL1_ENST00000315567_chr4_78870951_+_91aa MTPRHHCEAYSSAGEEEEEEEEEKLDMSSDQIAANLQAVINEVCRHRPLNLGPFVVRAFLRSSTSEGLLLKIDPLLPKEVKNEESEKEDA |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_CCNI_ENST00000537948_chr4_77996625_-_MRPL1_ENST00000315567_chr4_78870951_+_273nt ATGACCCCGCGTCACCACTGTGAGGCCTACAGCTCTGCCGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGAAGTTGGATATGTCAAGTGAC CAGATAGCTGCCAATCTGCAAGCAGTTATTAATGAAGTTTGTAGGCACAGACCGCTGAATTTGGGTCCCTTTGTGGTACGTGCTTTCCTT CGTAGTTCAACAAGTGAAGGTTTATTACTGAAGATTGATCCATTGTTGCCTAAAGAAGTAAAAAATGAAGAAAGTGAAAAAGAAGATGCC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_CCNI_ENST00000537948_chr4_77996625_-_MRPL1_ENST00000315567_chr4_78870951_+_902nt CTCCCTCCCCAGCCTTCCCCGCGAGCGGACGCGGCAGCGCCTCTGTCTCGCTTTTTCTTATTTTTCCCCCCTTTCCCCTTTCTTTTTTTT TTTTTCTTTTCTTTTCTCCCCTCCCCCCCTTTCACCATTTCCCCTCGGAGGCGCTTTCCCCGGGCAGGGGCAGAGCCGGTCTCACCCCCC GCCTCTCCCCGGCCCCCGCCGCCCTATGGCGAGAGGGAGCCCCCTCCCAACCCGGGCTCGAGCGGCGGCGGCCTCAGGCCGGGGGTCATC ATGGAACTAATTCGCTGACCGACCCAGCGGCCGCAGCCGTGCGTCCCGCTCGAGCGCCAGCGCCCGCGCCCGCGCCCCCCGATCCGCTTC CCCTTTCTCCCTCCTCAGTTGGCCGAGTCGTCCCGCGCGCACCGCCTCCGCGCGCCTATGAGAATGAGGTGGTAACGGGCCCCCGGATGA CCCCGCGTCACCACTGTGAGGCCTACAGCTCTGCCGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGAAGTTGGATATGTCAAGTGACCAGA TAGCTGCCAATCTGCAAGCAGTTATTAATGAAGTTTGTAGGCACAGACCGCTGAATTTGGGTCCCTTTGTGGTACGTGCTTTCCTTCGTA GTTCAACAAGTGAAGGTTTATTACTGAAGATTGATCCATTGTTGCCTAAAGAAGTAAAAAATGAAGAAAGTGAAAAAGAAGATGCCTAAA TGTGGTGAATTGTGAAATTACTTTCAGTGGTTTAAGAAGCAATGGAGAAAATGATAATACAGCATAATTTTTACATTTGATGTCTTGTTA TTGATCATACTTGAAAGTGAACTTTAACATTGAAAAATCGTACAGTCATTTCAAGAATAAGAAAATAAAATTTTCTCTTTGTCTGAACCT |
Top |
FusionGenePPI for CCNI_MRPL1 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CCNI | CEP63, ELAVL1, KRT18, CDC25A, IL1RAP, NXF1, CDK5, AKT1 | MRPL1 | ICT1, CUL3, CAND1, APP, MRPS7, MRPL10, MRPL11, MRPL4, MRPL12, HSPA1L, DLAT, ILF3, SDHA, ACAD9, TUFM, MSLN, MMGT1, SOX2, GOPC, RPL13, MRPL28, ZC3H3, RPS8, HNRNPA1, MRPL39, MRPS30, MRPL47, ATP6V1H, CORO1B, CORO1C, MRTO4, RPS20, RPL12, SETD4, NDUFAF1, APBB2, MRPL49, SLC25A10, PI4KA, SSB, IRS2, PTTG1, MRPL33, MRPL19, MRPL3, MRPL42, MRPL13, MRPL18, MRPL15, MRPL2, MRPL37, MRPL30, MRPL35, MRPL50, MRPL16, PARP16, MRPL20, MRPS18A, PRPF40A, NCKAP5L, MRPL17, MRPL14, MRPL40, MRPL38, MRPL34, MRPL32, MRPL9, MRPL44, MRPL57, BRCC3, MRPL45, MRPL43, GADD45GIP1, MRPL53, MRPL52, SLC30A7, MRPL21, SUGCT, C6orf203, COQ4, MRPL41, CIRBP, RBM3, CYLD |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for CCNI_MRPL1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for CCNI_MRPL1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |