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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 590

FusionGeneSummary for ACTN4_ETV5

check button Fusion gene summary
Fusion gene informationFusion gene name: ACTN4_ETV5
Fusion gene ID: 590
HgeneTgene
Gene symbol

ACTN4

ETV5

Gene ID

81

2119

Gene nameactinin alpha 4ETS variant 5
SynonymsACTININ-4|FSGS|FSGS1ERM
Cytomap

19q13.2

3q27.2

Type of geneprotein-codingprotein-coding
Descriptionalpha-actinin-4focal segmental glomerulosclerosis 1non-muscle alpha-actinin 4ETS translocation variant 5ets-related moleculeets-related protein ERM
Modification date2018052220180523
UniProtAcc

O43707

P41161

Ensembl transtripts involved in fusion geneENST00000252699, ENST00000424234, 
ENST00000390009, ENST00000497637, 
ENST00000306376, ENST00000434744, 
ENST00000537818, ENST00000480706, 
Fusion gene scores* DoF score28 X 17 X 13=61886 X 6 X 4=144
# samples 308
** MAII scorelog2(30/6188*10)=-4.36643879095316
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(8/144*10)=-0.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ACTN4 [Title/Abstract] AND ETV5 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneACTN4

GO:0035357

peroxisome proliferator activated receptor signaling pathway

22351778

HgeneACTN4

GO:0048384

retinoic acid receptor signaling pathway

22351778

HgeneACTN4

GO:0051272

positive regulation of cellular component movement

9508771

TgeneETV5

GO:0034599

cellular response to oxidative stress

19443906


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BU623662ACTN4chr19

39220652

-ETV5chr3

185797834

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3CDSENST00000252699ENST00000306376ACTN4chr19

39220652

-ETV5chr3

185797834

+
3UTR-3CDSENST00000252699ENST00000434744ACTN4chr19

39220652

-ETV5chr3

185797834

+
3UTR-3CDSENST00000252699ENST00000537818ACTN4chr19

39220652

-ETV5chr3

185797834

+
3UTR-intronENST00000252699ENST00000480706ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000424234ENST00000306376ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000424234ENST00000434744ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000424234ENST00000537818ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-intronENST00000424234ENST00000480706ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000390009ENST00000306376ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000390009ENST00000434744ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000390009ENST00000537818ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-intronENST00000390009ENST00000480706ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000497637ENST00000306376ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000497637ENST00000434744ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-3CDSENST00000497637ENST00000537818ACTN4chr19

39220652

-ETV5chr3

185797834

+
intron-intronENST00000497637ENST00000480706ACTN4chr19

39220652

-ETV5chr3

185797834

+

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FusionProtFeatures for ACTN4_ETV5


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ACTN4

O43707

ETV5

P41161

F-actin cross-linking protein which is thought to anchoractin to a variety of intracellular structures. This is a bundlingprotein (Probable). Probably involved in vesicular trafficking viaits association with the CART complex. The CART complex isnecessary for efficient transferrin receptor recycling but not forEGFR degradation (PubMed:15772161). Involved in tight junctionassembly in epithelial cells probably through interaction withMICALL2. Links MICALL2 to the actin cytoskeleton and recruits itto the tight junctions (By similarity). May also function as atranscriptional coactivator, stimulating transcription mediated bythe nuclear hormone receptors PPARG and RARA (PubMed:22351778).{ECO:0000250|UniProtKB:P57780, ECO:0000269|PubMed:15772161,ECO:0000269|PubMed:22351778, ECO:0000305|PubMed:9508771}. Binds to DNA sequences containing the consensusnucleotide core sequence 5'-GGAA.-3'.{ECO:0000269|PubMed:8152800}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for ACTN4_ETV5


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for ACTN4_ETV5


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for ACTN4_ETV5


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ACTN4_ETV5


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneACTN4C0333497Segmental glomerulosclerosis3UNIPROT
HgeneACTN4C0024667Animal Mammary Neoplasms1CTD_human
HgeneACTN4C0024668Mammary Neoplasms, Experimental1CTD_human