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Fusion gene ID: 585 |
FusionGeneSummary for ACTN4_CIB3 |
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Fusion gene information | Fusion gene name: ACTN4_CIB3 | Fusion gene ID: 585 | Hgene | Tgene | Gene symbol | ACTN4 | CIB3 | Gene ID | 81 | 117286 |
Gene name | actinin alpha 4 | calcium and integrin binding family member 3 | |
Synonyms | ACTININ-4|FSGS|FSGS1 | KIP3 | |
Cytomap | 19q13.2 | 19p13.11 | |
Type of gene | protein-coding | protein-coding | |
Description | alpha-actinin-4focal segmental glomerulosclerosis 1non-muscle alpha-actinin 4 | calcium and integrin-binding family member 3DNA-dependent protein kinase catalytic subunit-interacting protein 3 | |
Modification date | 20180522 | 20180519 | |
UniProtAcc | O43707 | Q96Q77 | |
Ensembl transtripts involved in fusion gene | ENST00000252699, ENST00000424234, ENST00000390009, ENST00000497637, | ENST00000269878, ENST00000379859, ENST00000541493, | |
Fusion gene scores | * DoF score | 28 X 17 X 13=6188 | 4 X 2 X 3=24 |
# samples | 30 | 4 | |
** MAII score | log2(30/6188*10)=-4.36643879095316 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: ACTN4 [Title/Abstract] AND CIB3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ACTN4 | GO:0035357 | peroxisome proliferator activated receptor signaling pathway | 22351778 |
Hgene | ACTN4 | GO:0048384 | retinoic acid receptor signaling pathway | 22351778 |
Hgene | ACTN4 | GO:0051272 | positive regulation of cellular component movement | 9508771 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | OV | TCGA-24-1843-01A | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000252699 | ENST00000269878 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
Frame-shift | ENST00000252699 | ENST00000379859 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
5CDS-5UTR | ENST00000252699 | ENST00000541493 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
Frame-shift | ENST00000424234 | ENST00000269878 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
Frame-shift | ENST00000424234 | ENST00000379859 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
5CDS-5UTR | ENST00000424234 | ENST00000541493 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
Frame-shift | ENST00000390009 | ENST00000269878 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
Frame-shift | ENST00000390009 | ENST00000379859 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
5CDS-5UTR | ENST00000390009 | ENST00000541493 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
intron-3CDS | ENST00000497637 | ENST00000269878 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
intron-3CDS | ENST00000497637 | ENST00000379859 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
intron-5UTR | ENST00000497637 | ENST00000541493 | ACTN4 | chr19 | 39138547 | + | CIB3 | chr19 | 16275724 | - |
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FusionProtFeatures for ACTN4_CIB3 |
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Hgene | Tgene |
ACTN4 | CIB3 |
F-actin cross-linking protein which is thought to anchoractin to a variety of intracellular structures. This is a bundlingprotein (Probable). Probably involved in vesicular trafficking viaits association with the CART complex. The CART complex isnecessary for efficient transferrin receptor recycling but not forEGFR degradation (PubMed:15772161). Involved in tight junctionassembly in epithelial cells probably through interaction withMICALL2. Links MICALL2 to the actin cytoskeleton and recruits itto the tight junctions (By similarity). May also function as atranscriptional coactivator, stimulating transcription mediated bythe nuclear hormone receptors PPARG and RARA (PubMed:22351778).{ECO:0000250|UniProtKB:P57780, ECO:0000269|PubMed:15772161,ECO:0000269|PubMed:22351778, ECO:0000305|PubMed:9508771}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ACTN4_CIB3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ACTN4_CIB3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ACTN4 | MYOZ2, MYOZ1, PDLIM1, USP6NL, SLC9A3R2, COL17A1, TRIM3, MAGI1, GSN, CAMK2A, CAMK2B, INO80, UBTF, STAT1, HDAC7, MEF2A, UCHL5, TJP1, ATXN7, HDAC5, VDR, ESR1, PSMA3, ELAVL1, SIRT7, SLC2A4, ISG15, COIL, SACS, HGS, UBASH3B, SHC1, NOS3, ACTN2, ACTN1, FMNL1, TRAF3IP1, FN1, VCAM1, CDH1, ITGA4, SVIL, CD81, IGSF8, ICAM1, TXN, RPS27, POT1, KPNA2, MAPK7, CDKN2A, VCP, SF3A3, GNB2, HUWE1, ACTN3, BMP7, ALK, CUL7, OBSL1, CCDC8, EGFR, LUZP4, RARA, HSPB1, AHNAK, ALDOA, ALDOC, IDH3A, MYH15, MYH2, MYH7B, NCAPG2, PSMA6, PSMB5, PUS7, TPM2, TSG101, CKB, CYC1, ECSIT, MCFD2, PSMB8, TPM1, TPM3, TPM4, NTRK1, CAPZA2, DBN1, FLNA, MYH9, MYO1C, PPP1CB, IQGAP1, PDLIM7, SYNPO, MAPRE1, SIN3B, MYEF2, LIMA1, ANLN, MYO5C, MYO19, MYO18A, CTNNB1, MCM2, NFYA, CDC73, DDIAS, SSH1, NCL, DLD, DNM1L, PDHA1, SOD1, TRIM25, TES | CIB3 | AES, MEOX1, MEOX2, REL, SP4, TACC3, ENOX2, TRIM2, SERTAD1, ZNF398, GMCL1, ZNF426, LNX1, KLF17, CCDC155, BEND7 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ACTN4_CIB3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ACTN4_CIB3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ACTN4 | C0333497 | Segmental glomerulosclerosis | 3 | UNIPROT |
Hgene | ACTN4 | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Hgene | ACTN4 | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |