|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 5783 |
FusionGeneSummary for CCDC127_SDHA |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CCDC127_SDHA | Fusion gene ID: 5783 | Hgene | Tgene | Gene symbol | CCDC127 | SDHA | Gene ID | 133957 | 6389 |
| Gene name | coiled-coil domain containing 127 | succinate dehydrogenase complex flavoprotein subunit A | |
| Synonyms | - | CMD1GG|FP|PGL5|SDH1|SDH2|SDHF | |
| Cytomap | 5p15.33 | 5p15.33 | |
| Type of gene | protein-coding | protein-coding | |
| Description | coiled-coil domain-containing protein 127 | succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrialflavoprotein subunit of complex IIsuccinate dehydrogenase complex, subunit A, flavoprotein (Fp) | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q96BQ5 | P31040 | |
| Ensembl transtripts involved in fusion gene | ENST00000296824, | ENST00000264932, ENST00000504309, ENST00000510361, ENST00000507522, | |
| Fusion gene scores | * DoF score | 3 X 2 X 4=24 | 4 X 5 X 4=80 |
| # samples | 4 | 5 | |
| ** MAII score | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: CCDC127 [Title/Abstract] AND SDHA [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | SDHA | GO:0006105 | succinate metabolic process | 7550341 |
| Tgene | SDHA | GO:0022904 | respiratory electron transport chain | 7550341 |
| Tgene | SDHA | GO:0055114 | oxidation-reduction process | 7550341 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LGG | TCGA-S9-A6UA-01A | CCDC127 | chr5 | 216844 | - | SDHA | chr5 | 233592 | + |
| TCGA | RV | LUSC | TCGA-96-7544-01A | CCDC127 | chr5 | 218208 | - | SDHA | chr5 | 223597 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000296824 | ENST00000264932 | CCDC127 | chr5 | 216844 | - | SDHA | chr5 | 233592 | + |
| In-frame | ENST00000296824 | ENST00000504309 | CCDC127 | chr5 | 216844 | - | SDHA | chr5 | 233592 | + |
| In-frame | ENST00000296824 | ENST00000510361 | CCDC127 | chr5 | 216844 | - | SDHA | chr5 | 233592 | + |
| 5CDS-intron | ENST00000296824 | ENST00000507522 | CCDC127 | chr5 | 216844 | - | SDHA | chr5 | 233592 | + |
| 5UTR-3CDS | ENST00000296824 | ENST00000264932 | CCDC127 | chr5 | 218208 | - | SDHA | chr5 | 223597 | + |
| 5UTR-3CDS | ENST00000296824 | ENST00000504309 | CCDC127 | chr5 | 218208 | - | SDHA | chr5 | 223597 | + |
| 5UTR-3CDS | ENST00000296824 | ENST00000510361 | CCDC127 | chr5 | 218208 | - | SDHA | chr5 | 223597 | + |
| 5UTR-intron | ENST00000296824 | ENST00000507522 | CCDC127 | chr5 | 218208 | - | SDHA | chr5 | 223597 | + |
Top |
FusionProtFeatures for CCDC127_SDHA |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CCDC127 | SDHA |
| Flavoprotein (FP) subunit of succinate dehydrogenase(SDH) that is involved in complex II of the mitochondrial electrontransport chain and is responsible for transferring electrons fromsuccinate to ubiquinone (coenzyme Q) (PubMed:24781757). Can act asa tumor suppressor (PubMed:20484225).{ECO:0000269|PubMed:20484225, ECO:0000305|PubMed:24781757}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >SDHA | chr5:216844 | chr5:233592 | ENST00000264932 | + | 6 | 15 | 456_457 | 298 | 665 | Nucleotide binding | FAD |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >CCDC127 | chr5:216844 | chr5:233592 | ENST00000296824 | - | 2 | 3 | 49_135 | 40 | 261 | Coiled coil | Ontology_term=ECO:0000255 |
| Tgene | SDHA | chr5:216844 | chr5:233592 | ENST00000264932 | + | 6 | 15 | 68_73 | 298 | 665 | Nucleotide binding | FAD |
| Tgene | SDHA | chr5:216844 | chr5:233592 | ENST00000264932 | + | 6 | 15 | 91_106 | 298 | 665 | Nucleotide binding | FAD |
Top |
FusionGeneSequence for CCDC127_SDHA |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for CCDC127_SDHA |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| CCDC127 | RNF11, MYO1C, VAPA | SDHA | UBC, ICT1, CSNK2B, ARRB2, SIRT7, CUL3, CUL4A, CUL5, CUL2, CUL1, COPS5, COPS6, DCUN1D1, CAND1, NEDD8, SDHB, SUCLA2, SUCLG1, SUCLG2, UQCRFS1, UQCRB, SYNE2, MTERF3, RAVER1, TIMM50, LRRC8A, MDH1, SAMM50, DHODH, TOMM70A, TAP1, TMEM14B, HIGD1A, NDUFS2, OXCT1, MRPL1, MRPS9, ZC3H4, NDUFS3, CYB5R3, NDUFS6, NDUFS8, NDUFV2, EIF4A1, XRCC6, MARC1, IMPAD1, ACAT1, GCN1L1, PSMD1, PROCR, SLC2A14, SLC27A2, SQSTM1, PDHA1, ATP5F1, NDUFV1, FN1, ITGA4, FBXO6, NXF1, APOA1BP, ATP1B1, CPNE1, CPNE3, CYC1, DLD, DNAJA3, HSPA9, HSPB1, MDH2, MTCH1, NDUFA2, PPIB, RAB14, ACLY, CS, GLOD4, SDHC, UQCRQ, NTRK1, HSPB2, CEP128, RPGRIP1L, TMEM67, SDHAF2, CRY1, CRY2, UBXN10, OTUB1, NFATC2, DUSP4, DUSP9, C6orf57, PDZRN3, PDSS2, PDSS1, PDP1, ACN9, SIRT3, ACAD9, WBP2, SEC22B, YWHAB, PPIA, MYL12A, HSD17B10, BANF1, CKB, ANXA5, SFXN1, LDHA, RPL30, HNRNPH3, EEF2, ATP1A1, HIST1H2AD, CCT2, EIF4A3, CCT8, RPL26, EEF1G, CDK1, SLC25A5, CHCHD2, RPN2, ATP5H, PPIAL4B, RPL12, LDHAL6A, LDHB, PDIA3, SLC25A3, ARL6IP5, PMVK, HMGB3, RAB10, CKAP4, HSP90B1, MAP4K1, SERPINH1, PSMC2, TMED10, PDIA6, RAB21, EEF1B2, CHCHD3, RUVBL2, TMED9, GANAB, UQCRC1, TMEM109, YWHAQ, YWHAZ, TFAM, YWHAG, SHMT2, PGAM1, YWHAE, PRDX3, MCM3, CCT7, TPI1, PPP2R1A, CANX, EMC2, LMNB2, EIF2S1, APEX1, ELAVL1, LMNA, NDFIP2, ATP6V0D1, DNAJB11, HLA-B, HLA-A, IDH3A, HNRNPA1, JUP, MAT2A, PSMC5, SERBP1, PSMC1, UQCRC2, PRPH, NAMPT, DARS, FARSA, ASNS, LMNB1, RPN1, TKT, SSRP1, DSP, MCM5, HSD17B4, DDX1, PCSK1, CPT1A, DGKG, MCM6, HSPA4, KPNB1, PSMD2, AARS2, TPR, SMC3, COPA, FASN, HDLBP, EPRS, HIST1H2AE, HIST1H2AB, HIST1H2BD, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BI, HIST1H2BC |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for CCDC127_SDHA |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | SDHA | P31040 | DB09270 | Ubidecarenone | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | small molecule | approved|investigational|nutraceutical |
Top |
RelatedDiseases for CCDC127_SDHA |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | SDHA | C0023264 | Leigh Disease | 3 | CTD_human;ORPHANET;UNIPROT |
| Tgene | SDHA | C1855008 | Mitochondrial Complex II Deficiency | 2 | CTD_human;ORPHANET;UNIPROT |
| Tgene | SDHA | C0029408 | Degenerative polyarthritis | 1 | CTD_human |
| Tgene | SDHA | C0036341 | Schizophrenia | 1 | PSYGENET |
| Tgene | SDHA | C3279992 | PARAGANGLIOMAS 5 | 1 | UNIPROT |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|