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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 5675

FusionGeneSummary for CBFB_NDE1

check button Fusion gene summary
Fusion gene informationFusion gene name: CBFB_NDE1
Fusion gene ID: 5675
HgeneTgene
Gene symbol

CBFB

NDE1

Gene ID

865

54820

Gene namecore-binding factor subunit betanudE neurodevelopment protein 1
SynonymsPEBP2BHOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1
Cytomap

16q22.1

16p13.11

Type of geneprotein-codingprotein-coding
Descriptioncore-binding factor subunit betaCBF-betaPEA2-betaPEBP2-betaSL3-3 enhancer factor 1 beta subunitSL3-3 enhancer factor 1 subunit betaSL3/AKV core-binding factor beta subunitcore-binding factor beta subunitpolyomavirus enhancer binding protein 2, betnuclear distribution protein nudE homolog 1LIS1-interacting protein NUDE1, rat homolognudE nuclear distribution E homolog 1nudE nuclear distribution gene E homolog 1
Modification date2018052320180523
UniProtAcc

Q13951

Q9NXR1

Ensembl transtripts involved in fusion geneENST00000561924, ENST00000290858, 
ENST00000412916, ENST00000568858, 
ENST00000396353, ENST00000396355, 
ENST00000396354, ENST00000342673, 
ENST00000571896, 
Fusion gene scores* DoF score14 X 14 X 9=176413 X 17 X 2=442
# samples 2619
** MAII scorelog2(26/1764*10)=-2.76226703252907
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(19/442*10)=-1.21804695106048
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CBFB [Title/Abstract] AND NDE1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AF249897CBFBchr16

67116211

+NDE1chr16

15818851

-
ChiTaRS3.1AF202996CBFBchr16

67116231

+NDE1chr16

15818658

-
ChiTaRS3.1AF249898CBFBchr16

67116213

+NDE1chr16

15814910

-
ChiTaRS3.1AF390859CBFBchr16

67120259

+NDE1chr16

15815070

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000561924ENST00000396353CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000561924ENST00000396355CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000561924ENST00000396354CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000561924ENST00000342673CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000561924ENST00000571896CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-intronENST00000290858ENST00000396353CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000290858ENST00000396355CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000290858ENST00000396354CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000290858ENST00000342673CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000290858ENST00000571896CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-intronENST00000412916ENST00000396353CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000412916ENST00000396355CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000412916ENST00000396354CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000412916ENST00000342673CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-3UTRENST00000412916ENST00000571896CBFBchr16

67116211

+NDE1chr16

15818851

-
intron-intronENST00000568858ENST00000396353CBFBchr16

67116211

+NDE1chr16

15818851

-
intron-3UTRENST00000568858ENST00000396355CBFBchr16

67116211

+NDE1chr16

15818851

-
intron-3UTRENST00000568858ENST00000396354CBFBchr16

67116211

+NDE1chr16

15818851

-
intron-3UTRENST00000568858ENST00000342673CBFBchr16

67116211

+NDE1chr16

15818851

-
intron-3UTRENST00000568858ENST00000571896CBFBchr16

67116211

+NDE1chr16

15818851

-
5CDS-intronENST00000561924ENST00000396353CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-3UTRENST00000561924ENST00000396355CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-3UTRENST00000561924ENST00000396354CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-3UTRENST00000561924ENST00000342673CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-3UTRENST00000561924ENST00000571896CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-intronENST00000290858ENST00000396353CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-3UTRENST00000290858ENST00000396355CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-3UTRENST00000290858ENST00000396354CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-3UTRENST00000290858ENST00000342673CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-3UTRENST00000290858ENST00000571896CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-intronENST00000412916ENST00000396353CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-3UTRENST00000412916ENST00000396355CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-3UTRENST00000412916ENST00000396354CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-3UTRENST00000412916ENST00000342673CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-3UTRENST00000412916ENST00000571896CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-intronENST00000568858ENST00000396353CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-3UTRENST00000568858ENST00000396355CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-3UTRENST00000568858ENST00000396354CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-3UTRENST00000568858ENST00000342673CBFBchr16

67116231

+NDE1chr16

15818658

-
intron-3UTRENST00000568858ENST00000571896CBFBchr16

67116231

+NDE1chr16

15818658

-
5CDS-intronENST00000561924ENST00000396353CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000561924ENST00000396355CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000561924ENST00000396354CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000561924ENST00000342673CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000561924ENST00000571896CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000290858ENST00000396353CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000290858ENST00000396355CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000290858ENST00000396354CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000290858ENST00000342673CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000290858ENST00000571896CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000412916ENST00000396353CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000412916ENST00000396355CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000412916ENST00000396354CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000412916ENST00000342673CBFBchr16

67116213

+NDE1chr16

15814910

-
5CDS-intronENST00000412916ENST00000571896CBFBchr16

67116213

+NDE1chr16

15814910

-
intron-intronENST00000568858ENST00000396353CBFBchr16

67116213

+NDE1chr16

15814910

-
intron-intronENST00000568858ENST00000396355CBFBchr16

67116213

+NDE1chr16

15814910

-
intron-intronENST00000568858ENST00000396354CBFBchr16

67116213

+NDE1chr16

15814910

-
intron-intronENST00000568858ENST00000342673CBFBchr16

67116213

+NDE1chr16

15814910

-
intron-intronENST00000568858ENST00000571896CBFBchr16

67116213

+NDE1chr16

15814910

-
intron-intronENST00000561924ENST00000396353CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000561924ENST00000396355CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000561924ENST00000396354CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000561924ENST00000342673CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000561924ENST00000571896CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000290858ENST00000396353CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000290858ENST00000396355CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000290858ENST00000396354CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000290858ENST00000342673CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000290858ENST00000571896CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000412916ENST00000396353CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000412916ENST00000396355CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000412916ENST00000396354CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000412916ENST00000342673CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000412916ENST00000571896CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000568858ENST00000396353CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000568858ENST00000396355CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000568858ENST00000396354CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000568858ENST00000342673CBFBchr16

67120259

+NDE1chr16

15815070

-
intron-intronENST00000568858ENST00000571896CBFBchr16

67120259

+NDE1chr16

15815070

-

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FusionProtFeatures for CBFB_NDE1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CBFB

Q13951

NDE1

Q9NXR1

Forms the heterodimeric complex core-binding factor(CBF) with RUNX family proteins (RUNX1, RUNX2, and RUNX3). RUNXmembers modulate the transcription of their target genes throughrecognizing the core consensus binding sequence 5'-TGTGGT-3', orvery rarely, 5'-TGCGGT-3', within their regulatory regions viatheir runt domain, while CBFB is a non-DNA-binding regulatorysubunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX. The heterodimers bind to the core siteof a number of enhancers and promoters, including murine leukemiavirus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL3and GM-CSF promoters. CBF complexes repress ZBTB7B transcriptionfactor during cytotoxic (CD8+) T cell development. They bind toRUNX-binding sequence within the ZBTB7B locus acting astranscriptional silencer and allowing for cytotoxic T celldifferentiation. {ECO:0000250|UniProtKB:Q08024}. Required for centrosome duplication and formation andfunction of the mitotic spindle. Essential for the development ofthe cerebral cortex. May regulate the production of neurons bycontrolling the orientation of the mitotic spindle during divisionof cortical neuronal progenitors of the proliferative ventricularzone of the brain. Orientation of the division plane perpendicularto the layers of the cortex gives rise to two proliferativeneuronal progenitors whereas parallel orientation of the divisionplane yields one proliferative neuronal progenitor and a post-mitotic neuron. A premature shift towards a neuronal fate withinthe progenitor population may result in an overall reduction inthe final number of neurons and an increase in the number ofneurons in the deeper layers of the cortex.{ECO:0000269|PubMed:17600710, ECO:0000269|PubMed:21529752}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CBFB_NDE1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CBFB_NDE1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CBFB_NDE1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CBFB_NDE1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCBFBC0023467Leukemia, Myelocytic, Acute2CTD_human
HgeneCBFBC0005941Bone Diseases, Developmental1CTD_human
HgeneCBFBC0008925Cleft Palate1CTD_human
HgeneCBFBC0018798Congenital Heart Defects1CTD_human
HgeneCBFBC0023479Acute myelomonocytic leukemia1CTD_human;ORPHANET
HgeneCBFBC0029396Heterotopic Ossification1CTD_human
TgeneNDE1C0036341Schizophrenia4PSYGENET
TgeneNDE1C0033975Psychotic Disorders1PSYGENET
TgeneNDE1C0349204Nonorganic psychosis1PSYGENET