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Fusion gene ID: 5602 |
FusionGeneSummary for CASP6_ACADSB |
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Fusion gene information | Fusion gene name: CASP6_ACADSB | Fusion gene ID: 5602 | Hgene | Tgene | Gene symbol | CASP6 | ACADSB | Gene ID | 839 | 36 |
Gene name | caspase 6 | acyl-CoA dehydrogenase short/branched chain | |
Synonyms | MCH2 | 2-MEBCAD|ACAD7|SBCAD | |
Cytomap | 4q25 | 10q26.13 | |
Type of gene | protein-coding | protein-coding | |
Description | caspase-6apoptotic protease MCH-2caspase 6, apoptosis-related cysteine peptidasecaspase 6, apoptosis-related cysteine protease | short/branched chain specific acyl-CoA dehydrogenase, mitochondrial2-methyl branched chain acyl-CoA dehydrogenase2-methylbutyryl-coenzyme A dehydrogenaseacyl-Coenzyme A dehydrogenase, short/branched chain | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P55212 | P45954 | |
Ensembl transtripts involved in fusion gene | ENST00000352981, ENST00000265164, ENST00000510324, ENST00000505486, | ENST00000368869, ENST00000358776, ENST00000496730, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 2 X 2 X 1=4 |
# samples | 1 | 2 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: CASP6 [Title/Abstract] AND ACADSB [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CASP6 | GO:0006508 | proteolysis | 12888622 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BE567326 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000352981 | ENST00000368869 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-3UTR | ENST00000352981 | ENST00000358776 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-intron | ENST00000352981 | ENST00000496730 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-intron | ENST00000265164 | ENST00000368869 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-3UTR | ENST00000265164 | ENST00000358776 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-intron | ENST00000265164 | ENST00000496730 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-intron | ENST00000510324 | ENST00000368869 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-3UTR | ENST00000510324 | ENST00000358776 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-intron | ENST00000510324 | ENST00000496730 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-intron | ENST00000505486 | ENST00000368869 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-3UTR | ENST00000505486 | ENST00000358776 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
intron-intron | ENST00000505486 | ENST00000496730 | CASP6 | chr4 | 110610562 | - | ACADSB | chr10 | 124813793 | + |
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FusionProtFeatures for CASP6_ACADSB |
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Hgene | Tgene |
CASP6 | ACADSB |
Involved in the activation cascade of caspasesresponsible for apoptosis execution. Cleaves poly(ADP-ribose)polymerase in vitro, as well as lamins. Overexpression promotesprogrammed cell death. | Has greatest activity toward short branched chain acyl-CoA derivative such as (s)-2-methylbutyryl-CoA, isobutyryl-CoA,and 2-methylhexanoyl-CoA as well as toward short straight chainacyl-CoAs such as butyryl-CoA and hexanoyl-CoA. Can use valproyl-CoA as substrate and may play a role in controlling the metabolicflux of valproic acid in the development of toxicity of thisagent. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CASP6_ACADSB |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CASP6_ACADSB |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CASP6_ACADSB |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | ACADSB | P45954 | DB00313 | Valproic Acid | Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial | small molecule | approved|investigational |
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RelatedDiseases for CASP6_ACADSB |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ACADSB | C0004352 | Autistic Disorder | 1 | CTD_human |
Tgene | ACADSB | C1864912 | 2-Methylbutyryl-CoA Dehydrogenase Deficiency | 1 | CTD_human;ORPHANET;UNIPROT |