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Fusion gene ID: 5015 |
FusionGeneSummary for C4orf46_FAM188A |
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Fusion gene information | Fusion gene name: C4orf46_FAM188A | Fusion gene ID: 5015 | Hgene | Tgene | Gene symbol | C4orf46 | FAM188A | Gene ID | 201725 | 80013 |
Gene name | chromosome 4 open reading frame 46 | MINDY lysine 48 deubiquitinase 3 | |
Synonyms | RCDG1 | C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 | |
Cytomap | 4q32.1 | 10p13 | |
Type of gene | protein-coding | protein-coding | |
Description | renal cancer differentiation gene 1 protein | ubiquitin carboxyl-terminal hydrolase MINDY-3CARD-containing proteinMINDY deubiquitinase 3caspase recruitment domain containing pro-apoptotic proteindermal papilla-derived protein 5deubiquitinating enzyme MINDY-3family with sequence similarity 188 m | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q504U0 | ||
Ensembl transtripts involved in fusion gene | ENST00000379205, ENST00000508457, ENST00000508836, | ENST00000378036, ENST00000477891, ENST00000277632, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 4 X 3 X 4=48 |
# samples | 1 | 4 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: C4orf46 [Title/Abstract] AND FAM188A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF695980 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000379205 | ENST00000378036 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
5CDS-5UTR | ENST00000379205 | ENST00000477891 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
5CDS-5UTR | ENST00000379205 | ENST00000277632 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
In-frame | ENST00000508457 | ENST00000378036 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
5CDS-5UTR | ENST00000508457 | ENST00000477891 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
5CDS-5UTR | ENST00000508457 | ENST00000277632 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
intron-3CDS | ENST00000508836 | ENST00000378036 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
intron-5UTR | ENST00000508836 | ENST00000477891 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
intron-5UTR | ENST00000508836 | ENST00000277632 | C4orf46 | chr4 | 159592767 | - | FAM188A | chr10 | 15824225 | - |
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FusionProtFeatures for C4orf46_FAM188A |
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Hgene | Tgene |
C4orf46 | FAM188A |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for C4orf46_FAM188A |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_C4orf46_ENST00000379205_chr4_159592767_-_FAM188A_ENST00000378036_chr10_15824225_-_136aa MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDGSSGPESFTVYHYNGLKQSNYNEKVMYV >In-frame_C4orf46_ENST00000508457_chr4_159592767_-_FAM188A_ENST00000378036_chr10_15824225_-_136aa MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDGSSGPESFTVYHYNGLKQSNYNEKVMYV |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_C4orf46_ENST00000379205_chr4_159592767_-_FAM188A_ENST00000378036_chr10_15824225_-_408nt ATGGCCGACCCTGAGGAGTTGCAGGTTTCTTCGCCGCCCCCGCCGCCTCCCTCTTCTCCCTCCTCTTCAGACGCCTCTGCAGCATCTTCC CCGGGCGGCCCAGTGAGTTTGGGCTGGCCAGTTCCGAGCAGGAGCAGCGGCCCAACGGTGGACCAGCTGGAGGAAGTGGAGCTGCAGATC GGAGACGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGTACGTA GAAGGGACTGCAGTTGTGATGGGTTTTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCA >In-frame_C4orf46_ENST00000508457_chr4_159592767_-_FAM188A_ENST00000378036_chr10_15824225_-_408nt ATGGCCGACCCTGAGGAGTTGCAGGTTTCTTCGCCGCCCCCGCCGCCTCCCTCTTCTCCCTCCTCTTCAGACGCCTCTGCAGCATCTTCC CCGGGCGGCCCAGTGAGTTTGGGCTGGCCAGTTCCGAGCAGGAGCAGCGGCCCAACGGTGGACCAGCTGGAGGAAGTGGAGCTGCAGATC GGAGACGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGTACGTA GAAGGGACTGCAGTTGTGATGGGTTTTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_C4orf46_ENST00000379205_chr4_159592767_-_FAM188A_ENST00000378036_chr10_15824225_-_1475nt GCCCTTCGAGATCGATTGGAGGCTCGCGCAGGAGCCGTGAGTTGCCTAAGGTGAATTGACTCATATGATTGGCTGTCCCGAAAAATGAAA CGTCTTTGTGGTCCGGGGCTGAGACCCACGAGGAGACTGGGCGGGATTTCTGGCGTTAGGAGGCGGGGCCTTTCGGCTTTGGGCGCGAGT GGTTAAAAGACAGTTGGTGTCGGTTCGGCTTCTCGGGTCGGATTCCGCGGTCCCAACCCTTCCCCATGGCCGACCCTGAGGAGTTGCAGG TTTCTTCGCCGCCCCCGCCGCCTCCCTCTTCTCCCTCCTCTTCAGACGCCTCTGCAGCATCTTCCCCGGGCGGCCCAGTGAGTTTGGGCT GGCCAGTTCCGAGCAGGAGCAGCGGCCCAACGGTGGACCAGCTGGAGGAAGTGGAGCTGCAGATCGGAGACGGCTCCAGTGGTCCAGAAT CTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGTACGTAGAAGGGACTGCAGTTGTGATGGGTT TTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCATACATTGAGTTACTCTGGACCACAG ATCGCTCTCCTTCACTAAATTAATTTGTCTAAGTATTTATAAGGAAGATCTTAATAACAGATGTTGAAAGAAGGAGTCAAGACTGGCAAT TGGCTGGATTAAGCTAAACACTGGTATCACTGATTAACTGTAAATAACAATTAAAAACACATTTTCAGTGTTTATGATATGTTTAAATTA TTTGTCCTAAAGCTTTATGTTAAAGATTATCCTATTTTACCCCTTCGTGTGAAATTTACTAGCAAAATTAAGCTTTCATCAAAGTTCATC ACTTTTGCATTCAGATACTTGGTCATTTACTTACCAAATTACAAACGCAATACTACAGCATTTGTATATTAAGTATCACAGTTACTATTG ATAAACTACTTTTGGGTTTTATTTCATTGAGGCACTTTTTTTATTGTTTGAATGATTCCGGCTTGTAATATATCAGCCTCTACAATGAAA TGCAGAAGAGTTCATTTTTCTAAGATCTGTTTTTCATTAGAAATATTGACAAATAACACATTGTCAACCTGGATCCTTTGACAATTTACT TAACTCTGGCATGTTCACAAAAAGTAGAAACTCTAAGAGACCATTACCATTTATTCACAGATGTATAGGGGATGTATTCTAAAAACTGAC AGAAAAGAGAATCTGATAGTCAACACTGTTAACTTTTACTGTGTAATTGCCAAATACACTTTTCCAAATTTGTCCCAACAGCCCTGTAAG CCAGCTTTCTTCTATATTTATAAACACGATAAATGCATGAGAAGATCTGTTATTACATTAGTATATTACGTTATTTATTATGATCCTAGT >In-frame_C4orf46_ENST00000508457_chr4_159592767_-_FAM188A_ENST00000378036_chr10_15824225_-_1321nt GGGGCCTTTCGGCTTTGGGCGCGAGTGGTTAAAAGACAGTTGGTGTCGGTTCGGCTTCTCGGGTCGGATTCCGCGGTCCCAACCCTTCCC CATGGCCGACCCTGAGGAGTTGCAGGTTTCTTCGCCGCCCCCGCCGCCTCCCTCTTCTCCCTCCTCTTCAGACGCCTCTGCAGCATCTTC CCCGGGCGGCCCAGTGAGTTTGGGCTGGCCAGTTCCGAGCAGGAGCAGCGGCCCAACGGTGGACCAGCTGGAGGAAGTGGAGCTGCAGAT CGGAGACGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGTACGT AGAAGGGACTGCAGTTGTGATGGGTTTTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCC ATACATTGAGTTACTCTGGACCACAGATCGCTCTCCTTCACTAAATTAATTTGTCTAAGTATTTATAAGGAAGATCTTAATAACAGATGT TGAAAGAAGGAGTCAAGACTGGCAATTGGCTGGATTAAGCTAAACACTGGTATCACTGATTAACTGTAAATAACAATTAAAAACACATTT TCAGTGTTTATGATATGTTTAAATTATTTGTCCTAAAGCTTTATGTTAAAGATTATCCTATTTTACCCCTTCGTGTGAAATTTACTAGCA AAATTAAGCTTTCATCAAAGTTCATCACTTTTGCATTCAGATACTTGGTCATTTACTTACCAAATTACAAACGCAATACTACAGCATTTG TATATTAAGTATCACAGTTACTATTGATAAACTACTTTTGGGTTTTATTTCATTGAGGCACTTTTTTTATTGTTTGAATGATTCCGGCTT GTAATATATCAGCCTCTACAATGAAATGCAGAAGAGTTCATTTTTCTAAGATCTGTTTTTCATTAGAAATATTGACAAATAACACATTGT CAACCTGGATCCTTTGACAATTTACTTAACTCTGGCATGTTCACAAAAAGTAGAAACTCTAAGAGACCATTACCATTTATTCACAGATGT ATAGGGGATGTATTCTAAAAACTGACAGAAAAGAGAATCTGATAGTCAACACTGTTAACTTTTACTGTGTAATTGCCAAATACACTTTTC CAAATTTGTCCCAACAGCCCTGTAAGCCAGCTTTCTTCTATATTTATAAACACGATAAATGCATGAGAAGATCTGTTATTACATTAGTAT |
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FusionGenePPI for C4orf46_FAM188A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for C4orf46_FAM188A |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C4orf46_FAM188A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |