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Fusion gene ID: 4880 |
FusionGeneSummary for C1orf61_ADD1 |
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Fusion gene information | Fusion gene name: C1orf61_ADD1 | Fusion gene ID: 4880 | Hgene | Tgene | Gene symbol | C1orf61 | ADD1 | Gene ID | 10485 | 118 |
Gene name | chromosome 1 open reading frame 61 | adducin 1 | |
Synonyms | CROC4 | ADDA | |
Cytomap | 1q22 | 4p16.3 | |
Type of gene | protein-coding | protein-coding | |
Description | protein CROC-4contingent replication of cDNA 4transcriptional activator of the c-fos promoter | alpha-adducinadducin 1 (alpha)erythrocyte adducin alpha subunit | |
Modification date | 20180329 | 20180523 | |
UniProtAcc | Q13536 | P35611 | |
Ensembl transtripts involved in fusion gene | ENST00000488498, ENST00000368243, | ENST00000446856, ENST00000264758, ENST00000398125, ENST00000513328, ENST00000503455, ENST00000355842, ENST00000398123, ENST00000398129, ENST00000538860, | |
Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 5 X 5 X 3=75 |
# samples | 2 | 5 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: C1orf61 [Title/Abstract] AND ADD1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | C1orf61 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 10995546 |
Tgene | ADD1 | GO:0032092 | positive regulation of protein binding | 3693401|7642559 |
Tgene | ADD1 | GO:0051016 | barbed-end actin filament capping | 8626479 |
Tgene | ADD1 | GO:0051017 | actin filament bundle assembly | 3693401 |
Tgene | ADD1 | GO:0071277 | cellular response to calcium ion | 25978380 |
Tgene | ADD1 | GO:1903142 | positive regulation of establishment of endothelial barrier | 25978380 |
Tgene | ADD1 | GO:1903393 | positive regulation of adherens junction organization | 25978380 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | D44764 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000488498 | ENST00000446856 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000488498 | ENST00000264758 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000488498 | ENST00000398125 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000488498 | ENST00000513328 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000488498 | ENST00000503455 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000488498 | ENST00000355842 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000488498 | ENST00000398123 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000488498 | ENST00000398129 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000488498 | ENST00000538860 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000446856 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000264758 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000398125 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000513328 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000503455 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000355842 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000398123 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000398129 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
intron-intron | ENST00000368243 | ENST00000538860 | C1orf61 | chr1 | 156378403 | + | ADD1 | chr4 | 2895934 | - |
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FusionProtFeatures for C1orf61_ADD1 |
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Hgene | Tgene |
C1orf61 | ADD1 |
May play a role in FOS signaling pathways involved indevelopment and remodeling of neurons. Promotes transcription ofthe FOS promoter. {ECO:0000269|PubMed:10995546}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for C1orf61_ADD1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for C1orf61_ADD1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for C1orf61_ADD1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C1orf61_ADD1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ADD1 | C0020538 | Hypertensive disease | 2 | CTD_human |
Tgene | ADD1 | C2239176 | Liver carcinoma | 1 | CTD_human |