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Fusion gene ID: 4771 |
FusionGeneSummary for C17orf80_MYCN |
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Fusion gene information | Fusion gene name: C17orf80_MYCN | Fusion gene ID: 4771 | Hgene | Tgene | Gene symbol | C17orf80 | MYCN | Gene ID | 55028 | 4613 |
Gene name | chromosome 17 open reading frame 80 | MYCN proto-oncogene, bHLH transcription factor | |
Synonyms | HLC-8|MIG3|SPEP1 | MODED|N-myc|NMYC|ODED|bHLHe37 | |
Cytomap | 17q25.1 | 2p24.3 | |
Type of gene | protein-coding | protein-coding | |
Description | uncharacterized protein C17orf80cell migration-inducing gene 3 proteinhuman lung cancer oncogene 8 proteinlung cancer-related protein 8sperm-expressed protein 1 | N-myc proto-oncogene proteinclass E basic helix-loop-helix protein 37neuroblastoma MYC oncogeneneuroblastoma-derived v-myc avian myelocytomatosis viral related oncogeneoncogene NMYCv-myc avian myelocytomatosis viral oncogene neuroblastoma derived hom | |
Modification date | 20180519 | 20180520 | |
UniProtAcc | Q9BSJ5 | P04198 | |
Ensembl transtripts involved in fusion gene | ENST00000255557, ENST00000577615, ENST00000268942, ENST00000359042, ENST00000426147, ENST00000535032, ENST00000582793, | ENST00000281043, | |
Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 1 X 1 X 1=1 |
# samples | 3 | 2 | |
** MAII score | log2(3/4*10)=2.90689059560852 | log2(2/1*10)=4.32192809488736 | |
Context | PubMed: C17orf80 [Title/Abstract] AND MYCN [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | MYCN | GO:0010628 | positive regulation of gene expression | 23308108 |
Tgene | MYCN | GO:0010629 | negative regulation of gene expression | 21796614 |
Tgene | MYCN | GO:0045944 | positive regulation of transcription by RNA polymerase II | 17327229 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | CX753028 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + | ||
ChiTaRS3.1 | CX752004 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000255557 | ENST00000281043 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + |
Frame-shift | ENST00000577615 | ENST00000281043 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + |
Frame-shift | ENST00000268942 | ENST00000281043 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + |
Frame-shift | ENST00000359042 | ENST00000281043 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + |
intron-3CDS | ENST00000426147 | ENST00000281043 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + |
Frame-shift | ENST00000535032 | ENST00000281043 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + |
Frame-shift | ENST00000582793 | ENST00000281043 | C17orf80 | chr17 | 71243455 | - | MYCN | chr2 | 16085675 | + |
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FusionProtFeatures for C17orf80_MYCN |
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Hgene | Tgene |
C17orf80 | MYCN |
Positively regulates the transcription of MYCNOS inneuroblastoma cells. {ECO:0000269|PubMed:24391509}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for C17orf80_MYCN |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for C17orf80_MYCN |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for C17orf80_MYCN |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C17orf80_MYCN |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | MYCN | C0027819 | Neuroblastoma | 12 | CTD_human;ORPHANET |
Tgene | MYCN | C0796068 | Oculodigitoesophagoduodenal syndrome | 3 | CTD_human;ORPHANET;UNIPROT |
Tgene | MYCN | C0007117 | Basal cell carcinoma | 1 | CTD_human |
Tgene | MYCN | C0007621 | Neoplastic Cell Transformation | 1 | CTD_human |
Tgene | MYCN | C0008625 | Chromosome Aberrations | 1 | CTD_human |
Tgene | MYCN | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
Tgene | MYCN | C0020507 | Hyperplasia | 1 | CTD_human |
Tgene | MYCN | C0025149 | Medulloblastoma | 1 | CTD_human |
Tgene | MYCN | C0027540 | Necrosis | 1 | CTD_human |