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Fusion gene ID: 4635 |
FusionGeneSummary for C11orf54_C11orf54 |
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Fusion gene information | Fusion gene name: C11orf54_C11orf54 | Fusion gene ID: 4635 | Hgene | Tgene | Gene symbol | C11orf54 | C11orf54 | Gene ID | 28970 | 28970 |
Gene name | chromosome 11 open reading frame 54 | chromosome 11 open reading frame 54 | |
Synonyms | PTD012|PTOD012 | PTD012|PTOD012 | |
Cytomap | 11q21 | 11q21 | |
Type of gene | protein-coding | protein-coding | |
Description | ester hydrolase C11orf54 | ester hydrolase C11orf54 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q9H0W9 | Q9H0W9 | |
Ensembl transtripts involved in fusion gene | ENST00000528288, ENST00000531516, ENST00000331239, ENST00000528099, ENST00000540113, ENST00000354421, | ENST00000528288, ENST00000531516, ENST00000331239, ENST00000528099, ENST00000540113, ENST00000354421, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
# samples | 1 | 1 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: C11orf54 [Title/Abstract] AND C11orf54 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | CA311300 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3UTR | ENST00000528288 | ENST00000528288 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-intron | ENST00000528288 | ENST00000531516 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-3UTR | ENST00000528288 | ENST00000331239 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-intron | ENST00000528288 | ENST00000528099 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-intron | ENST00000528288 | ENST00000540113 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-intron | ENST00000528288 | ENST00000354421 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-3UTR | ENST00000531516 | ENST00000528288 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000531516 | ENST00000531516 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-3UTR | ENST00000531516 | ENST00000331239 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000531516 | ENST00000528099 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000531516 | ENST00000540113 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000531516 | ENST00000354421 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-3UTR | ENST00000331239 | ENST00000528288 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-intron | ENST00000331239 | ENST00000531516 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-3UTR | ENST00000331239 | ENST00000331239 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-intron | ENST00000331239 | ENST00000528099 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-intron | ENST00000331239 | ENST00000540113 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
3UTR-intron | ENST00000331239 | ENST00000354421 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-3UTR | ENST00000528099 | ENST00000528288 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000528099 | ENST00000531516 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-3UTR | ENST00000528099 | ENST00000331239 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000528099 | ENST00000528099 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000528099 | ENST00000540113 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000528099 | ENST00000354421 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-3UTR | ENST00000540113 | ENST00000528288 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000540113 | ENST00000531516 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-3UTR | ENST00000540113 | ENST00000331239 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000540113 | ENST00000528099 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000540113 | ENST00000540113 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000540113 | ENST00000354421 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-3UTR | ENST00000354421 | ENST00000528288 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000354421 | ENST00000531516 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-3UTR | ENST00000354421 | ENST00000331239 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000354421 | ENST00000528099 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000354421 | ENST00000540113 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
intron-intron | ENST00000354421 | ENST00000354421 | C11orf54 | chr11 | 93496107 | - | C11orf54 | chr11 | 93495830 | + |
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FusionProtFeatures for C11orf54_C11orf54 |
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Hgene | Tgene |
C11orf54 | C11orf54 |
Exhibits ester hydrolase activity on the substrate p-nitrophenyl acetate. {ECO:0000269|PubMed:16522806}. | Exhibits ester hydrolase activity on the substrate p-nitrophenyl acetate. {ECO:0000269|PubMed:16522806}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for C11orf54_C11orf54 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for C11orf54_C11orf54 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for C11orf54_C11orf54 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C11orf54_C11orf54 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |