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Fusion gene ID: 43859 |
FusionGeneSummary for ZSWIM3_PTPRT |
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Fusion gene information | Fusion gene name: ZSWIM3_PTPRT | Fusion gene ID: 43859 | Hgene | Tgene | Gene symbol | ZSWIM3 | PTPRT | Gene ID | 140831 | 11122 |
Gene name | zinc finger SWIM-type containing 3 | protein tyrosine phosphatase, receptor type T | |
Synonyms | C20orf164|PPP1R174 | RPTPrho | |
Cytomap | 20q13.12 | 20q12-q13.11 | |
Type of gene | protein-coding | protein-coding | |
Description | zinc finger SWIM domain-containing protein 3protein phosphatase 1, regulatory subunit 174zinc finger, SWIM domain containing 3 | receptor-type tyrosine-protein phosphatase TR-PTP-TRPTP-rhoreceptor protein tyrosine phosphatasereceptor-type tyrosine-protein phosphatase rho | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q96MP5 | O14522 | |
Ensembl transtripts involved in fusion gene | ENST00000454862, ENST00000255152, | ENST00000373184, ENST00000373187, ENST00000356100, ENST00000373190, ENST00000373193, ENST00000373198, ENST00000373201, ENST00000485499, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 10 X 8 X 6=480 |
# samples | 1 | 10 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(10/480*10)=-2.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ZSWIM3 [Title/Abstract] AND PTPRT [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PTPRT | GO:0006470 | protein dephosphorylation | 16973135 |
Tgene | PTPRT | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | 18644975 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SKCM | TCGA-YG-AA3P-06A | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000454862 | ENST00000373184 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
5UTR-3CDS | ENST00000454862 | ENST00000373187 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
5UTR-3CDS | ENST00000454862 | ENST00000356100 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
5UTR-3CDS | ENST00000454862 | ENST00000373190 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
5UTR-3CDS | ENST00000454862 | ENST00000373193 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
5UTR-3CDS | ENST00000454862 | ENST00000373198 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
5UTR-3CDS | ENST00000454862 | ENST00000373201 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
5UTR-5UTR | ENST00000454862 | ENST00000485499 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
Frame-shift | ENST00000255152 | ENST00000373184 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
Frame-shift | ENST00000255152 | ENST00000373187 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
Frame-shift | ENST00000255152 | ENST00000356100 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
Frame-shift | ENST00000255152 | ENST00000373190 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
Frame-shift | ENST00000255152 | ENST00000373193 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
Frame-shift | ENST00000255152 | ENST00000373198 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
Frame-shift | ENST00000255152 | ENST00000373201 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
5CDS-5UTR | ENST00000255152 | ENST00000485499 | ZSWIM3 | chr20 | 44486619 | + | PTPRT | chr20 | 41514572 | - |
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FusionProtFeatures for ZSWIM3_PTPRT |
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Hgene | Tgene |
ZSWIM3 | PTPRT |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ZSWIM3_PTPRT |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ZSWIM3_PTPRT |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ZSWIM3 | PTPRT | CUL3, EGFR, ERBB2, ERBB4, ATP2A2, PHKA1, PHKB |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ZSWIM3_PTPRT |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZSWIM3_PTPRT |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |