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Fusion gene ID: 43654 |
FusionGeneSummary for ZNF718_LMO7 |
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Fusion gene information | Fusion gene name: ZNF718_LMO7 | Fusion gene ID: 43654 | Hgene | Tgene | Gene symbol | ZNF718 | LMO7 | Gene ID | 255403 | 4008 |
Gene name | zinc finger protein 718 | LIM domain 7 | |
Synonyms | - | FBX20|FBXO20|LMO7b|LOMP | |
Cytomap | 4p16.3 | 13q22.2 | |
Type of gene | protein-coding | protein-coding | |
Description | zinc finger protein 718 | LIM domain only protein 7F-box only protein 20F-box protein Fbx20LIM domain only 7 proteinLMO-7zinc-finger domain-containing protein | |
Modification date | 20180409 | 20180522 | |
UniProtAcc | Q8WWI1 | ||
Ensembl transtripts involved in fusion gene | ENST00000510175, | ENST00000341547, ENST00000357063, ENST00000377534, ENST00000321797, ENST00000526202, ENST00000465261, ENST00000605961, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 4 X 4 X 3=48 |
# samples | 1 | 4 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ZNF718 [Title/Abstract] AND LMO7 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | LMO7 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 17067998 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DB237035 | ZNF718 | chr4 | 127011 | + | LMO7 | chr13 | 76195897 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000510175 | ENST00000341547 | ZNF718 | chr4 | 127011 | + | LMO7 | chr13 | 76195897 | + |
intron-3CDS | ENST00000510175 | ENST00000357063 | ZNF718 | chr4 | 127011 | + | LMO7 | chr13 | 76195897 | + |
intron-3CDS | ENST00000510175 | ENST00000377534 | ZNF718 | chr4 | 127011 | + | LMO7 | chr13 | 76195897 | + |
intron-intron | ENST00000510175 | ENST00000321797 | ZNF718 | chr4 | 127011 | + | LMO7 | chr13 | 76195897 | + |
intron-intron | ENST00000510175 | ENST00000526202 | ZNF718 | chr4 | 127011 | + | LMO7 | chr13 | 76195897 | + |
intron-intron | ENST00000510175 | ENST00000465261 | ZNF718 | chr4 | 127011 | + | LMO7 | chr13 | 76195897 | + |
intron-intron | ENST00000510175 | ENST00000605961 | ZNF718 | chr4 | 127011 | + | LMO7 | chr13 | 76195897 | + |
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FusionProtFeatures for ZNF718_LMO7 |
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Hgene | Tgene |
ZNF718 | LMO7 |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ZNF718_LMO7 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ZNF718_LMO7 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ZNF718_LMO7 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZNF718_LMO7 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |