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Fusion gene ID: 436 |
FusionGeneSummary for ACOX3_C1orf106 |
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Fusion gene information | Fusion gene name: ACOX3_C1orf106 | Fusion gene ID: 436 | Hgene | Tgene | Gene symbol | ACOX3 | C1orf106 | Gene ID | 8310 |
Gene name | acyl-CoA oxidase 3, pristanoyl | ||
Synonyms | - | ||
Cytomap | 4p16.1 | ||
Type of gene | protein-coding | ||
Description | peroxisomal acyl-coenzyme A oxidase 3BRCACoxacyl-Coenzyme A oxidase 3, pristanoylbranched-chain acyl-CoA oxidasepristanoyl-CoA oxidase | ||
Modification date | 20180523 | ||
UniProtAcc | O15254 | ||
Ensembl transtripts involved in fusion gene | ENST00000356406, ENST00000413009, ENST00000503233, ENST00000515797, | ENST00000367342, ENST00000413687, ENST00000465162, | |
Fusion gene scores | * DoF score | 7 X 7 X 3=147 | 1 X 1 X 1=1 |
# samples | 7 | 1 | |
** MAII score | log2(7/147*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: ACOX3 [Title/Abstract] AND C1orf106 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AA527241 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000356406 | ENST00000367342 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000356406 | ENST00000413687 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000356406 | ENST00000465162 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000413009 | ENST00000367342 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000413009 | ENST00000413687 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000413009 | ENST00000465162 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000503233 | ENST00000367342 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000503233 | ENST00000413687 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000503233 | ENST00000465162 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000515797 | ENST00000367342 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000515797 | ENST00000413687 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
intron-intron | ENST00000515797 | ENST00000465162 | ACOX3 | chr4 | 8369498 | + | C1orf106 | chr1 | 200875352 | - |
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FusionProtFeatures for ACOX3_C1orf106 |
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Hgene | Tgene |
ACOX3 | C1orf106 |
Oxidizes the CoA-esters of 2-methyl-branched fattyacids. {ECO:0000250, ECO:0000269|PubMed:9271077}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ACOX3_C1orf106 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ACOX3_C1orf106 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ACOX3_C1orf106 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ACOX3_C1orf106 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |