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Fusion gene ID: 43309 |
FusionGeneSummary for ZNF429_LSM14A |
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Fusion gene information | Fusion gene name: ZNF429_LSM14A | Fusion gene ID: 43309 | Hgene | Tgene | Gene symbol | ZNF429 | LSM14A | Gene ID | 353088 | 26065 |
Gene name | zinc finger protein 429 | LSM14A, mRNA processing body assembly factor | |
Synonyms | - | C19orf13|FAM61A|RAP55|RAP55A | |
Cytomap | 19p12 | 19q13.11 | |
Type of gene | protein-coding | protein-coding | |
Description | zinc finger protein 429 | protein LSM14 homolog ALSM14 homolog ALSM14A, SCD6 homolog ARNA-associated protein 55RNA-associated protein 55AalphaSNBPfamily with sequence similarity 61, member AhRAP55hRAP55Aprotein SCD6 homologputative alpha-synuclein-binding protein | |
Modification date | 20180522 | 20180519 | |
UniProtAcc | Q86V71 | Q8ND56 | |
Ensembl transtripts involved in fusion gene | ENST00000594022, ENST00000358491, ENST00000597078, | ENST00000540746, ENST00000544216, ENST00000433627, | |
Fusion gene scores | * DoF score | 3 X 3 X 3=27 | 8 X 7 X 6=336 |
# samples | 3 | 8 | |
** MAII score | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(8/336*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ZNF429 [Title/Abstract] AND LSM14A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | LSM14A | GO:0033962 | cytoplasmic mRNA processing body assembly | 16484376 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | UCEC | TCGA-B5-A5OE-01A | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
TCGA | LD | UCEC | TCGA-B5-A5OE-01A | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000594022 | ENST00000540746 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
intron-intron | ENST00000594022 | ENST00000544216 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
intron-intron | ENST00000594022 | ENST00000433627 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
In-frame | ENST00000358491 | ENST00000540746 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
5CDS-intron | ENST00000358491 | ENST00000544216 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
5CDS-intron | ENST00000358491 | ENST00000433627 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
In-frame | ENST00000597078 | ENST00000540746 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
5CDS-intron | ENST00000597078 | ENST00000544216 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
5CDS-intron | ENST00000597078 | ENST00000433627 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34717313 | + |
intron-3UTR | ENST00000594022 | ENST00000540746 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
intron-3UTR | ENST00000594022 | ENST00000544216 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
intron-3UTR | ENST00000594022 | ENST00000433627 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
5CDS-3UTR | ENST00000358491 | ENST00000540746 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
5CDS-3UTR | ENST00000358491 | ENST00000544216 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
5CDS-3UTR | ENST00000358491 | ENST00000433627 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
5CDS-3UTR | ENST00000597078 | ENST00000540746 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
5CDS-3UTR | ENST00000597078 | ENST00000544216 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
5CDS-3UTR | ENST00000597078 | ENST00000433627 | ZNF429 | chr19 | 21688576 | + | LSM14A | chr19 | 34718270 | + |
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FusionProtFeatures for ZNF429_LSM14A |
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Hgene | Tgene |
ZNF429 | LSM14A |
May be involved in transcriptional regulation. | Essential for formation of P-bodies, cytoplasmicstructures that provide storage sites for non-translating mRNAs.{ECO:0000269|PubMed:16484376, ECO:0000269|PubMed:17074753}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ZNF429_LSM14A |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_ZNF429_ENST00000358491_chr19_21688576_+_LSM14A_ENST00000540746_chr19_34717313_+_9aa >In-frame_ZNF429_ENST00000597078_chr19_21688576_+_LSM14A_ENST00000540746_chr19_34717313_+_9aa |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_ZNF429_ENST00000358491_chr19_21688576_+_LSM14A_ENST00000540746_chr19_34717313_+_27nt >In-frame_ZNF429_ENST00000597078_chr19_21688576_+_LSM14A_ENST00000540746_chr19_34717313_+_27nt |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_ZNF429_ENST00000358491_chr19_21688576_+_LSM14A_ENST00000540746_chr19_34717313_+_1000nt AAACATTATCCAATCAGGCACGCAGCTGGAGCGACAGGACGGTTTCCGGAATATGGCGGGGCGTTTGGCTCTTGCTGCAGCCAGAGCTCC AGGTCTCGTCTTCATTTCTGTGTCCTTTGTTCTTAGAGGCCCAGCCTGTGTGGCCCTGTGACCCGCAGATATTGGGAGATACACAGCTAA GACTCCAGGACCCCCTGGAAGCCTAGAAATGAAAACCACAGCTTTTGGACCCTAAAAGGTCTGGATTGATCGTACTGCTTTCTGAAAGAA AGACAACAAAGTTGCTGCATAGTCTACAAACAAGTCTCTGAAAATAGGTGAATTTCTAGCTCTTCATGGTCCTGAACATTGATTTCAGTC TTTGCAAAGAATGAAGAAGTGAATTCGCTGTACATTTGTCACCAGCACTGGGTTTTTGTTTTTTGTTTGTTTTTCCGCTTAATTTCAAAG ATAAAATGCAGTTACTTTTGGGGGTGGAAGGCTCATCTTAAAACATGAGCATTAAATATATTTGGAATAGCAGAAGGTTAAGTAATTTCT TATGTATAGTTAAACTAAAGCAGTACTTCAGTGGGACTTAACAAGTATTTTTTCATCACTGAAAGGTTTTTTTTTTTTATCACTAAATTG TATTTGGCAATTGCAAGTTGCCTGCAGATAGGGCCGTGATACTGTGTTTTGAGCCACAGAAGGTTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTATGTGTGTGTCTTTTTCCTCCTTTCTTTTGGGGAATCCTGTAATATGAGGTAGCTTATTTCGTCAATTAATTAGGGT GCTGGATGGTAGAGAATTTTGTCAGTCAACTATGTACACACAGTAAATACTGTTTCTTAGGCAAAGGTAACTTTTTTATATAGTTGTAAA ATTCCATTATATTCCATTGCCAAAGAAACATTAAGAACTTTGTATAGCTGTATAAAAAGCAACTAATTTTTTAAAGAATAAACATTTTAA >In-frame_ZNF429_ENST00000597078_chr19_21688576_+_LSM14A_ENST00000540746_chr19_34717313_+_960nt GGTTTCCGGAATATGGCGGGGCGTTTGGCTCTTGCTGCAGCCAGAGCTCCAGGTCTCGTCTTCATTTCTGTGTCCTTTGTTCTTAGAGGC CCAGCCTGTGTGGCCCTGTGACCCGCAGATATTGGGAGATACACAGCTAAGACTCCAGGACCCCCTGGAAGCCTAGAAATGAAAACCACA GCTTTTGGACCCTAAAAGGTCTGGATTGATCGTACTGCTTTCTGAAAGAAAGACAACAAAGTTGCTGCATAGTCTACAAACAAGTCTCTG AAAATAGGTGAATTTCTAGCTCTTCATGGTCCTGAACATTGATTTCAGTCTTTGCAAAGAATGAAGAAGTGAATTCGCTGTACATTTGTC ACCAGCACTGGGTTTTTGTTTTTTGTTTGTTTTTCCGCTTAATTTCAAAGATAAAATGCAGTTACTTTTGGGGGTGGAAGGCTCATCTTA AAACATGAGCATTAAATATATTTGGAATAGCAGAAGGTTAAGTAATTTCTTATGTATAGTTAAACTAAAGCAGTACTTCAGTGGGACTTA ACAAGTATTTTTTCATCACTGAAAGGTTTTTTTTTTTTATCACTAAATTGTATTTGGCAATTGCAAGTTGCCTGCAGATAGGGCCGTGAT ACTGTGTTTTGAGCCACAGAAGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTCTTTTTCCTCCTTTCTT TTGGGGAATCCTGTAATATGAGGTAGCTTATTTCGTCAATTAATTAGGGTGCTGGATGGTAGAGAATTTTGTCAGTCAACTATGTACACA CAGTAAATACTGTTTCTTAGGCAAAGGTAACTTTTTTATATAGTTGTAAAATTCCATTATATTCCATTGCCAAAGAAACATTAAGAACTT |
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FusionGenePPI for ZNF429_LSM14A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ZNF429 | LSM14A | ELAVL1, RAE1, HNRNPDL, SYNCRIP, CIRBP, HNRNPH1, DDX1, HNRNPU, HNRNPL, CSNK2A1, HECW2, TP53, PRMT8, NTRK1, XPO1, AHSA1, SORT1, EGFR, SFPQ, STRAP, G3BP1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ZNF429_LSM14A |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZNF429_LSM14A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |