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Fusion gene ID: 43305 |
FusionGeneSummary for ZNF423_TNFSF10 |
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Fusion gene information | Fusion gene name: ZNF423_TNFSF10 | Fusion gene ID: 43305 | Hgene | Tgene | Gene symbol | ZNF423 | TNFSF10 | Gene ID | 23090 | 8743 |
Gene name | zinc finger protein 423 | TNF superfamily member 10 | |
Synonyms | Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ | APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL | |
Cytomap | 16q12.1 | 3q26.31 | |
Type of gene | protein-coding | protein-coding | |
Description | zinc finger protein 423OLF-1/EBF associated zinc fingerSmad- and Olf-interacting zinc finger proteinearly B-cell factor associated zinc finger proteinolf1/EBF-associated zinc finger protein | tumor necrosis factor ligand superfamily member 10Apo-2 ligandTNF-related apoptosis inducing ligand TRAILchemokine tumor necrosis factor ligand superfamily member 10tumor necrosis factor (ligand) family, member 10tumor necrosis factor (ligand) superf | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | Q2M1K9 | P50591 | |
Ensembl transtripts involved in fusion gene | ENST00000561648, ENST00000563137, ENST00000562871, ENST00000262383, ENST00000535559, ENST00000567169, ENST00000562520, | ENST00000241261, ENST00000420541, | |
Fusion gene scores | * DoF score | 5 X 4 X 3=60 | 5 X 4 X 4=80 |
# samples | 4 | 6 | |
** MAII score | log2(4/60*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/80*10)=-0.415037499278844 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ZNF423 [Title/Abstract] AND TNFSF10 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ZNF423 | GO:0045892 | negative regulation of transcription, DNA-templated | 10660046 |
Hgene | ZNF423 | GO:0045893 | positive regulation of transcription, DNA-templated | 10660046 |
Tgene | TNFSF10 | GO:0043065 | positive regulation of apoptotic process | 21525171 |
Tgene | TNFSF10 | GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 21459798|21525171|22266862 |
Tgene | TNFSF10 | GO:0090200 | positive regulation of release of cytochrome c from mitochondria | 22266862 |
Tgene | TNFSF10 | GO:2001238 | positive regulation of extrinsic apoptotic signaling pathway | 20097879|21525171|22266862 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | UCS | TCGA-NF-A5CP-01A | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000561648 | ENST00000241261 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000561648 | ENST00000420541 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
5UTR-3CDS | ENST00000563137 | ENST00000241261 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
5UTR-3CDS | ENST00000563137 | ENST00000420541 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000562871 | ENST00000241261 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000562871 | ENST00000420541 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000262383 | ENST00000241261 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000262383 | ENST00000420541 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000535559 | ENST00000241261 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000535559 | ENST00000420541 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000567169 | ENST00000241261 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000567169 | ENST00000420541 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000562520 | ENST00000241261 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
intron-3CDS | ENST00000562520 | ENST00000420541 | ZNF423 | chr16 | 49889646 | - | TNFSF10 | chr3 | 172232788 | - |
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FusionProtFeatures for ZNF423_TNFSF10 |
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Hgene | Tgene |
ZNF423 | TNFSF10 |
Transcription factor that can both act as an activatoror a repressor depending on the context. Plays a central role inBMP signaling and olfactory neurogenesis. Associates with SMADs inresponse to BMP2 leading to activate transcription of BMP targetgenes. Acts as a transcriptional repressor via its interactionwith EBF1, a transcription factor involved in terminal olfactoryreceptor neurons differentiation; this interaction preventing EBF1to bind DNA and activate olfactory-specific genes. Involved inolfactory neurogenesis by participating in a developmental switchthat regulates the transition from differentiation to maturationin olfactory receptor neurons. Controls proliferation anddifferentiation of neural precursors in cerebellar vermisformation. {ECO:0000269|PubMed:10660046}. | Cytokine that binds to TNFRSF10A/TRAILR1,TNFRSF10B/TRAILR2, TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4 andpossibly also to TNFRSF11B/OPG (PubMed:26457518, PubMed:10549288).Induces apoptosis. Its activity may be modulated by binding to thedecoy receptors TNFRSF10C/TRAILR3, TNFRSF10D/TRAILR4 andTNFRSF11B/OPG that cannot induce apoptosis.{ECO:0000269|PubMed:10549288, ECO:0000269|PubMed:26457518}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ZNF423_TNFSF10 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ZNF423_TNFSF10 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ZNF423 | PARP1, SMAD4, SMAD1, EBF1, EBF2, EBF3, USP7, CEP290, LYN, BRCA1, MTA1, ZNF219, RBBP7, MBD3L1, ZG16B | TNFSF10 | ACP5, RBM48, TNFSF10, TNFRSF10D, TNFRSF10B, TNFRSF10A, CFLAR, CASP8, FADD, SOCS3, RIPK1, TNFAIP3, TRAF2, CASP3, ZDHHC17 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ZNF423_TNFSF10 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZNF423_TNFSF10 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ZNF423 | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |
Hgene | ZNF423 | C3539071 | NEPHRONOPHTHISIS 14 | 1 | UNIPROT |
Tgene | TNFSF10 | C0033578 | Prostatic Neoplasms | 4 | CTD_human |
Tgene | TNFSF10 | C0017638 | Glioma | 2 | CTD_human |
Tgene | TNFSF10 | C0027659 | Neoplasms, Experimental | 2 | CTD_human |
Tgene | TNFSF10 | C0027686 | Pathologic Neovascularization | 2 | CTD_human |
Tgene | TNFSF10 | C0000786 | Spontaneous abortion | 1 | CTD_human |
Tgene | TNFSF10 | C0007134 | Renal Cell Carcinoma | 1 | CTD_human |
Tgene | TNFSF10 | C0009375 | Colonic Neoplasms | 1 | CTD_human |
Tgene | TNFSF10 | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
Tgene | TNFSF10 | C0014170 | Endometrial Neoplasms | 1 | CTD_human |
Tgene | TNFSF10 | C0017636 | Glioblastoma | 1 | CTD_human |
Tgene | TNFSF10 | C0021400 | Influenza | 1 | CTD_human |
Tgene | TNFSF10 | C0022665 | Kidney Neoplasm | 1 | CTD_human |
Tgene | TNFSF10 | C0023418 | leukemia | 1 | CTD_human |
Tgene | TNFSF10 | C0023467 | Leukemia, Myelocytic, Acute | 1 | CTD_human |
Tgene | TNFSF10 | C0023903 | Liver neoplasms | 1 | CTD_human |
Tgene | TNFSF10 | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
Tgene | TNFSF10 | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
Tgene | TNFSF10 | C0027819 | Neuroblastoma | 1 | CTD_human |
Tgene | TNFSF10 | C0030297 | Pancreatic Neoplasm | 1 | CTD_human |
Tgene | TNFSF10 | C0152013 | Adenocarcinoma of lung (disorder) | 1 | CTD_human |
Tgene | TNFSF10 | C0919267 | ovarian neoplasm | 1 | CTD_human |
Tgene | TNFSF10 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Tgene | TNFSF10 | C2239176 | Liver carcinoma | 1 | CTD_human |