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Fusion gene ID: 42985 |
FusionGeneSummary for ZNF100_GIPC1 |
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Fusion gene information | Fusion gene name: ZNF100_GIPC1 | Fusion gene ID: 42985 | Hgene | Tgene | Gene symbol | ZNF100 | GIPC1 | Gene ID | 163227 | 10755 |
Gene name | zinc finger protein 100 | GIPC PDZ domain containing family member 1 | |
Synonyms | - | C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 | |
Cytomap | 19p12 | 19p13.12 | |
Type of gene | protein-coding | protein-coding | |
Description | zinc finger protein 100zinc finger protein 100 (Y1) | PDZ domain-containing protein GIPC1GAIP C-terminus-interacting proteinGLUT1 C-terminal binding proteinIGF-1 receptor interacting protein 1RGS-GAIP-interacting proteinRGS19-interacting protein 1regulator of G-protein signalling 19 interacting protein | |
Modification date | 20180519 | 20180522 | |
UniProtAcc | Q8IYN0 | O14908 | |
Ensembl transtripts involved in fusion gene | ENST00000358296, ENST00000305570, ENST00000596452, | ENST00000393029, ENST00000393028, ENST00000345425, ENST00000393033, ENST00000591349, ENST00000586027, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 5 X 3 X 5=75 |
# samples | 2 | 5 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ZNF100 [Title/Abstract] AND GIPC1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LUAD | TCGA-44-7669-01A | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000358296 | ENST00000393029 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5CDS-intron | ENST00000358296 | ENST00000393028 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5CDS-intron | ENST00000358296 | ENST00000345425 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5CDS-5UTR | ENST00000358296 | ENST00000393033 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5CDS-intron | ENST00000358296 | ENST00000591349 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5CDS-intron | ENST00000358296 | ENST00000586027 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
intron-5UTR | ENST00000305570 | ENST00000393029 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
intron-intron | ENST00000305570 | ENST00000393028 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
intron-intron | ENST00000305570 | ENST00000345425 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
intron-5UTR | ENST00000305570 | ENST00000393033 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
intron-intron | ENST00000305570 | ENST00000591349 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
intron-intron | ENST00000305570 | ENST00000586027 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5UTR-5UTR | ENST00000596452 | ENST00000393029 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5UTR-intron | ENST00000596452 | ENST00000393028 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5UTR-intron | ENST00000596452 | ENST00000345425 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5UTR-5UTR | ENST00000596452 | ENST00000393033 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5UTR-intron | ENST00000596452 | ENST00000591349 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
5UTR-intron | ENST00000596452 | ENST00000586027 | ZNF100 | chr19 | 21948496 | - | GIPC1 | chr19 | 14603724 | - |
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FusionProtFeatures for ZNF100_GIPC1 |
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Hgene | Tgene |
ZNF100 | GIPC1 |
May be involved in transcriptional regulation. | May be involved in G protein-linked signaling. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ZNF100_GIPC1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ZNF100_GIPC1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ZNF100 | HYPK, NEUROG3, TNFRSF19, TIMM50, FGF3 | GIPC1 | ADRB1, MYO6, SH3BP4, GEMIN4, NUP93, MCM7, MARS, MMS19, TAGLN, PDXDC1, MYO1C, LHCGR, DRD3, LRP2, LRP1, LRP8, TPBG, ITGA6, ITGA5, SDC4, KIF1B, SLC2A1, ACTN1, TYRP1, NTRK1, NTRK2, RGS19, GSK3B, CDV3, CD93, ZNF408, HECW2, DDIT3, GGA1, GNAS, OGT, TSTA3, EWSR1, CDH1, TRIM25, BRCA1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ZNF100_GIPC1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZNF100_GIPC1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |