|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 42577 |
FusionGeneSummary for ZC3H18_ZFPM1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ZC3H18_ZFPM1 | Fusion gene ID: 42577 | Hgene | Tgene | Gene symbol | ZC3H18 | ZFPM1 | Gene ID | 124245 | 161882 |
| Gene name | zinc finger CCCH-type containing 18 | zinc finger protein, FOG family member 1 | |
| Synonyms | NHN1 | FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A | |
| Cytomap | 16q24.2 | 16q24.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | zinc finger CCCH domain-containing protein 18conserved nuclear protein NHN1nuclear protein NHN1 | zinc finger protein ZFPM1FOG-1friend of GATA 1friend of GATA protein 1zinc finger protein 89Azinc finger protein, multitype 1 | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q86VM9 | Q8IX07 | |
| Ensembl transtripts involved in fusion gene | ENST00000301011, ENST00000452588, | ENST00000319555, ENST00000569086, | |
| Fusion gene scores | * DoF score | 6 X 6 X 4=144 | 3 X 3 X 2=18 |
| # samples | 7 | 3 | |
| ** MAII score | log2(7/144*10)=-1.04064198449735 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: ZC3H18 [Title/Abstract] AND ZFPM1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | ZFPM1 | GO:0010724 | regulation of definitive erythrocyte differentiation | 15920471 |
| Tgene | ZFPM1 | GO:0045078 | positive regulation of interferon-gamma biosynthetic process | 21646796 |
| Tgene | ZFPM1 | GO:0045403 | negative regulation of interleukin-4 biosynthetic process | 21646796 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | LIHC | TCGA-DD-A11C-01A | ZC3H18 | chr16 | 88644134 | + | ZFPM1 | chr16 | 88580795 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shit | ENST00000301011 | ENST00000319555 | ZC3H18 | chr16 | 88644134 | + | ZFPM1 | chr16 | 88580795 | + |
| 5CDS-3UTR | ENST00000301011 | ENST00000569086 | ZC3H18 | chr16 | 88644134 | + | ZFPM1 | chr16 | 88580795 | + |
| Frame-shit | ENST00000452588 | ENST00000319555 | ZC3H18 | chr16 | 88644134 | + | ZFPM1 | chr16 | 88580795 | + |
| 5CDS-3UTR | ENST00000452588 | ENST00000569086 | ZC3H18 | chr16 | 88644134 | + | ZFPM1 | chr16 | 88580795 | + |
Top |
FusionProtFeatures for ZC3H18_ZFPM1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ZC3H18 | ZFPM1 |
| Transcription regulator that plays an essential role inerythroid and megakaryocytic cell differentiation. Essentialcofactor that acts via the formation of a heterodimer withtranscription factors of the GATA family GATA1, GATA2 and GATA3.Such heterodimer can both activate or repress transcriptionalactivity, depending on the cell and promoter context. Theheterodimer formed with GATA proteins is essential to activateexpression of genes such as NFE2, ITGA2B, alpha- and beta-globin,while it represses expression of KLF1. May be involved inregulation of some genes in gonads. May also be involved incardiac development, in a non-redundant way with ZFPM2/FOG2 (Bysimilarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for ZC3H18_ZFPM1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for ZC3H18_ZFPM1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ZC3H18 | OSBPL10, SMARCAD1, SF3A2, SIRT7, TERF1, TERF2, CUL3, NHP2L1, CDC5L, UBE2S, USP10, BUD31, SAFB, SF3B3, SF3B6, S100A9, USP39, NCSTN, SEPT2, HNRNPC, SMU1, SF3A1, HNRNPU, PSIP1, TRPM8, WDR70, VASN, RBM14, RBMX, HP1BP3, LGR4, CSNK2A2, MOV10, NXF1, LUC7L, LUC7L2, C9orf41, PTGER3, EPB41L3, NTRK1, RNPS1, RPL6, RTF1, SLC3A2, SRRM2, ACIN1, BRD4, LEO1, NUMA1, PNN, SNRPD2, SRRT, SSRP1, SUPT16H, KRAS, FBXW11, SRPK2, CLK1, CCNA2, RBM7, FERMT3, MZT1, FBXW7, ZC3H13, FNBP4, KIAA1429, CLK4, CLK3, RBBP6, YTHDC1, C10orf2, PRPF38B, CLK2, PRPF40A, TOPORS, ZFC3H1, RBM15B, RBMXL1, ZCCHC8, PRPF4B, SRSF12, PPHLN1, NKTR, SRSF8, CAMKV, ZC3H14, RBM25, CPSF4, WDR33, APOBEC3F, RBM6, TRA2A, TSPYL1, ERMAP, EXOSC10, SRSF1, RSBN1, AQR, RALY, CRNKL1, ELAVL2, DHX35, XAB2, PPIG, MKRN2, WDR83, U2AF2, ZC3H11A, SYF2, ZNF816, NKAP, PIP5K1A, SRSF10, TSPYL2, RBM15, NFKBIL1, CDC40, FIP1L1, SLTM, UPF1, KEAP1, CTR9, JPH4, SRRM1, ZNF214, GSPT2, ISY1, VANGL1, PPIE, SNW1, ZCCHC3 | ZFPM1 | GATA2, GATA1, RBBP4, MTA1, TRIM21, GSK3B, CTBP2, ERP44, DEFA6 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for ZC3H18_ZFPM1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for ZC3H18_ZFPM1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|