|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 4253 |
FusionGeneSummary for BMPR1B_MRPL39 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: BMPR1B_MRPL39 | Fusion gene ID: 4253 | Hgene | Tgene | Gene symbol | BMPR1B | MRPL39 | Gene ID | 658 | 54148 |
| Gene name | bone morphogenetic protein receptor type 1B | mitochondrial ribosomal protein L39 | |
| Synonyms | ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 | C21orf92|L39mt|MRP-L5|MRPL5|MSTP003|PRED22|PRED66|RPML5 | |
| Cytomap | 4q22.3 | 21q21.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | bone morphogenetic protein receptor type-1BBMP type-1B receptorBMPR-1Bactivin receptor-like kinase 6bone morphogenetic protein receptor, type IBserine/threonine receptor kinase | 39S ribosomal protein L39, mitochondrial39S ribosomal protein L5, mitochondrialL5mtMRP-L39mitochondrial large ribosomal subunit protein mL39 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | O00238 | Q9NYK5 | |
| Ensembl transtripts involved in fusion gene | ENST00000515059, ENST00000440890, ENST00000264568, ENST00000394931, ENST00000502683, | ENST00000307301, ENST00000352957, | |
| Fusion gene scores | * DoF score | 5 X 4 X 4=80 | 2 X 2 X 1=4 |
| # samples | 6 | 2 | |
| ** MAII score | log2(6/80*10)=-0.415037499278844 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
| Context | PubMed: BMPR1B [Title/Abstract] AND MRPL39 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | BMPR1B | GO:0006468 | protein phosphorylation | 12065756 |
| Hgene | BMPR1B | GO:0030509 | BMP signaling pathway | 18436533 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BG990101 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000515059 | ENST00000307301 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000515059 | ENST00000352957 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000440890 | ENST00000307301 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000440890 | ENST00000352957 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000264568 | ENST00000307301 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000264568 | ENST00000352957 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000394931 | ENST00000307301 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000394931 | ENST00000352957 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000502683 | ENST00000307301 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
| intron-intron | ENST00000502683 | ENST00000352957 | BMPR1B | chr4 | 95958790 | + | MRPL39 | chr21 | 26961053 | - |
Top |
FusionProtFeatures for BMPR1B_MRPL39 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| BMPR1B | MRPL39 |
| On ligand binding, forms a receptor complex consistingof two type II and two type I transmembrane serine/threoninekinases. Type II receptors phosphorylate and activate type Ireceptors which autophosphorylate, then bind and activate SMADtranscriptional regulators. Receptor for BMP7/OP-1 and GDF5.Positively regulates chondrocyte differentiation through GDF5interaction. {ECO:0000250|UniProtKB:P36898}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for BMPR1B_MRPL39 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for BMPR1B_MRPL39 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for BMPR1B_MRPL39 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for BMPR1B_MRPL39 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | BMPR1B | C1832702 | BRACHYDACTYLY, TYPE A2 | 2 | CTD_human;HPO;ORPHANET;UNIPROT |
| Hgene | BMPR1B | C0005941 | Bone Diseases, Developmental | 1 | CTD_human |
| Hgene | BMPR1B | C0015393 | Eye Abnormalities | 1 | CTD_human |
| Hgene | BMPR1B | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
| Hgene | BMPR1B | C0376634 | Craniofacial Abnormalities | 1 | CTD_human |
| Hgene | BMPR1B | C1836182 | Chondrodysplasia, acromesomelic, with genital anomalies | 1 | CTD_human |
| Hgene | BMPR1B | C4225183 | BRACHYDACTYLY, TYPE A1, D | 1 | UNIPROT |
| Hgene | BMPR1B | C4225404 | ACROMESOMELIC DYSPLASIA, DEMIRHAN TYPE | 1 | UNIPROT |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|