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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 42272

FusionGeneSummary for YAP1_C11orf70

check button Fusion gene summary
Fusion gene informationFusion gene name: YAP1_C11orf70
Fusion gene ID: 42272
HgeneTgene
Gene symbol

YAP1

C11orf70

Gene ID

10413

Gene nameYes associated protein 1
SynonymsCOB1|YAP|YAP2|YAP65|YKI
Cytomap

11q22.1

Type of geneprotein-coding
Descriptiontranscriptional coactivator YAP165 kDa Yes-associated proteinprotein yorkie homologyes-associated protein 1yes-associated protein 2yes-associated protein YAP65 homologyorkie homolog
Modification date20180527
UniProtAcc

P46937

Ensembl transtripts involved in fusion geneENST00000526343, ENST00000282441, 
ENST00000537274, ENST00000345877, 
ENST00000531439, ENST00000524575, 
ENST00000528834, 		ENST00000434758, 
ENST00000526781, ENST00000534360, 
Fusion gene scores* DoF score12 X 6 X 8=5763 X 3 X 3=27
# samples 124
** MAII scorelog2(12/576*10)=-2.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(4/27*10)=0.567040592723894
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: YAP1 [Title/Abstract] AND C11orf70 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationOncogene involved fusion gene, in-frame and retained their domain.
Tumor suppressor gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneYAP1

GO:0006974

cellular response to DNA damage stimulus

18280240

HgeneYAP1

GO:0008283

cell proliferation

17974916

HgeneYAP1

GO:0032570

response to progesterone

16772533

HgeneYAP1

GO:0033148

positive regulation of intracellular estrogen receptor signaling pathway

16772533

HgeneYAP1

GO:0045893

positive regulation of transcription, DNA-templated

20368466

HgeneYAP1

GO:0045944

positive regulation of transcription by RNA polymerase II

25796446

HgeneYAP1

GO:0050767

regulation of neurogenesis

25433207

HgeneYAP1

GO:0050847

progesterone receptor signaling pathway

16772533

HgeneYAP1

GO:0060242

contact inhibition

17974916

HgeneYAP1

GO:0065003

protein-containing complex assembly

20368466

HgeneYAP1

GO:0071480

cellular response to gamma radiation

18280240

HgeneYAP1

GO:0072091

regulation of stem cell proliferation

25433207


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVLUADTCGA-62-A46O-01AYAP1chr11

101985125

+C11orf70chr11

101951946

+
TCGARVLUADTCGA-69-7979-01AYAP1chr11

101985125

+C11orf70chr11

101918546

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000526343ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000526343ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101951946

+
5CDS-intronENST00000526343ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000282441ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000282441ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101951946

+
5CDS-intronENST00000282441ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000537274ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000537274ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101951946

+
5CDS-intronENST00000537274ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000345877ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000345877ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101951946

+
5CDS-intronENST00000345877ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000531439ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000531439ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101951946

+
5CDS-intronENST00000531439ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000524575ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000524575ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101951946

+
5CDS-intronENST00000524575ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101951946

+
intron-3CDSENST00000528834ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101951946

+
intron-3CDSENST00000528834ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101951946

+
intron-intronENST00000528834ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101951946

+
In-frameENST00000526343ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000526343ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000526343ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000282441ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000282441ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000282441ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000537274ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000537274ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000537274ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000345877ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000345877ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000345877ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000531439ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000531439ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000531439ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000524575ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000524575ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101918546

+
In-frameENST00000524575ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101918546

+
intron-3CDSENST00000528834ENST00000434758YAP1chr11

101985125

+C11orf70chr11

101918546

+
intron-3CDSENST00000528834ENST00000526781YAP1chr11

101985125

+C11orf70chr11

101918546

+
intron-3CDSENST00000528834ENST00000534360YAP1chr11

101985125

+C11orf70chr11

101918546

+

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FusionProtFeatures for YAP1_C11orf70


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
YAP1

P46937

C11orf70

Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneYAP1chr11:101985125chr11:101918546ENST00000282441+2986_100190505Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101918546ENST00000345877+2786_100190455Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101918546ENST00000526343+2786_100190451Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101918546ENST00000531439+2886_100190489Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101918546ENST00000537274+2886_100190493Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101951946ENST00000282441+2986_100190505Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101951946ENST00000345877+2786_100190455Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101951946ENST00000526343+2786_100190451Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101951946ENST00000531439+2886_100190489Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101951946ENST00000537274+2886_100190493Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101918546ENST00000282441+293_49190505Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101918546ENST00000345877+273_49190455Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101918546ENST00000526343+273_49190451Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101918546ENST00000531439+283_49190489Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101918546ENST00000537274+283_49190493Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101951946ENST00000282441+293_49190505Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101951946ENST00000345877+273_49190455Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101951946ENST00000526343+273_49190451Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101951946ENST00000531439+283_49190489Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101951946ENST00000537274+283_49190493Compositional biasNote=Pro-rich

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneYAP1chr11:101985125chr11:101918546ENST00000282441+29298_359190505Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101918546ENST00000345877+27298_359190455Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101918546ENST00000524575+29298_35912327Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101918546ENST00000524575+2986_10012327Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101918546ENST00000526343+27298_359190451Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101918546ENST00000531439+28298_359190489Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101918546ENST00000537274+28298_359190493Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101951946ENST00000282441+29298_359190505Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101951946ENST00000345877+27298_359190455Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101951946ENST00000524575+29298_35912327Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101951946ENST00000524575+2986_10012327Coiled coilOntology_term=ECO:0000269
HgeneYAP1chr11:101985125chr11:101951946ENST00000526343+27298_359190451Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101951946ENST00000531439+28298_359190489Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101951946ENST00000537274+28298_359190493Coiled coilOntology_term=ECO:0000255
HgeneYAP1chr11:101985125chr11:101918546ENST00000524575+293_4912327Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101951946ENST00000524575+293_4912327Compositional biasNote=Pro-rich
HgeneYAP1chr11:101985125chr11:101918546ENST00000282441+29171_204190505DomainWW 1
HgeneYAP1chr11:101985125chr11:101918546ENST00000282441+29230_263190505DomainWW 2
HgeneYAP1chr11:101985125chr11:101918546ENST00000345877+27171_204190455DomainWW 1
HgeneYAP1chr11:101985125chr11:101918546ENST00000345877+27230_263190455DomainWW 2
HgeneYAP1chr11:101985125chr11:101918546ENST00000524575+29171_20412327DomainWW 1
HgeneYAP1chr11:101985125chr11:101918546ENST00000524575+29230_26312327DomainWW 2
HgeneYAP1chr11:101985125chr11:101918546ENST00000526343+27171_204190451DomainWW 1
HgeneYAP1chr11:101985125chr11:101918546ENST00000526343+27230_263190451DomainWW 2
HgeneYAP1chr11:101985125chr11:101918546ENST00000531439+28171_204190489DomainWW 1
HgeneYAP1chr11:101985125chr11:101918546ENST00000531439+28230_263190489DomainWW 2
HgeneYAP1chr11:101985125chr11:101918546ENST00000537274+28171_204190493DomainWW 1
HgeneYAP1chr11:101985125chr11:101918546ENST00000537274+28230_263190493DomainWW 2
HgeneYAP1chr11:101985125chr11:101951946ENST00000282441+29171_204190505DomainWW 1
HgeneYAP1chr11:101985125chr11:101951946ENST00000282441+29230_263190505DomainWW 2
HgeneYAP1chr11:101985125chr11:101951946ENST00000345877+27171_204190455DomainWW 1
HgeneYAP1chr11:101985125chr11:101951946ENST00000345877+27230_263190455DomainWW 2
HgeneYAP1chr11:101985125chr11:101951946ENST00000524575+29171_20412327DomainWW 1
HgeneYAP1chr11:101985125chr11:101951946ENST00000524575+29230_26312327DomainWW 2
HgeneYAP1chr11:101985125chr11:101951946ENST00000526343+27171_204190451DomainWW 1
HgeneYAP1chr11:101985125chr11:101951946ENST00000526343+27230_263190451DomainWW 2
HgeneYAP1chr11:101985125chr11:101951946ENST00000531439+28171_204190489DomainWW 1
HgeneYAP1chr11:101985125chr11:101951946ENST00000531439+28230_263190489DomainWW 2
HgeneYAP1chr11:101985125chr11:101951946ENST00000537274+28171_204190493DomainWW 1
HgeneYAP1chr11:101985125chr11:101951946ENST00000537274+28230_263190493DomainWW 2
HgeneYAP1chr11:101985125chr11:101918546ENST00000282441+29291_504190505RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101918546ENST00000345877+27291_504190455RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101918546ENST00000524575+29291_50412327RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101918546ENST00000526343+27291_504190451RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101918546ENST00000531439+28291_504190489RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101918546ENST00000537274+28291_504190493RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101951946ENST00000282441+29291_504190505RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101951946ENST00000345877+27291_504190455RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101951946ENST00000524575+29291_50412327RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101951946ENST00000526343+27291_504190451RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101951946ENST00000531439+28291_504190489RegionNote=Transactivation domain
HgeneYAP1chr11:101985125chr11:101951946ENST00000537274+28291_504190493RegionNote=Transactivation domain


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FusionGeneSequence for YAP1_C11orf70


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for YAP1_C11orf70


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
YAP1ERBB4, TP53BP2, KIF5A, SLC9A3R1, YWHAQ, RUNX3, RUNX2, RUNX1, TP73, TP63, WBP1, SMAD7, SMAD6, SCAMP3, AMOT, ITCH, EP300, BTRC, YWHAG, FBXW11, SMAD1, SMAD5, SMAD3, EGFR, ELAVL1, KLF5, LATS2, LATS1, PML, SUMO1, PTPN14, NFE2, POLR2A, AMOTL2, SRSF2, AHCYL1, UBQLN2, SULT1A1, UNK, UBA2, ZFYVE19, VPS4B, PRDX1, IGBP1, THUMPD1, ZPR1, NUBP2, UBE2L3, PIN1, USP9X, TTC9C, UCHL3, UBE2D1, UFM1, UBE2C, UBXN7, VPS25, TEAD1, CREB1, PPP1CA, AMOTL1, ARID1A, ARID1B, ATPIF1, BCL9L, CCDC85C, DPF2, INADL, LIN7C, MPDZ, MPP5, NF2, PARD3, PDLIM7, RAE1, RAPGEF2, RASSF8, SLC9A3R2, SMARCD1, TEAD3, TJP2, WBP2, YWHAB, YWHAE, YWHAH, YWHAZ, MAP2K1, ARFIP1, PAPOLA, PRMT3, RTF1, STAT1, TSNAX, TOM1, FBXW7, ABL1, ENO1, MOV10, NXF1, FAM189B, PRRG4, CYYR1, TEAD4, ARRDC1, LDLRAD4, STUB1, CPVL, ERP44, FASN, HSPH1, HSPA4L, HSPA4, HYOU1, MCMBP, RAPGEF6, PTCH1, PRRG2, NEDD8, TEAD2, XPO1, SMAD2, ENAH, CDH1, PTPN21, DEFA6, BAG4, CTNNB1, NUDT5, PRKD1, XRCC5, XRCC6, AHNAK, EPRS, THBS1, EEF1A1, EEF1A1P5, WWC3, TUBB, HRNR, PFKP, RPL6, COPA, VCP, EIF3B, CAD, RBM10, SUN2, SLC25A5, PSMD2, ACTN1, RRBP1, DDX3X, RPS4X, FAM120A, NCL, CSTF1, TMPO, MAP4, USP15, RPL7A, SNRPB, RPL18, SF3B3, FLG2, HSPB1, CCT2, SND1, PRPF8, EIF4B, HSP90B1, NPM1, PPP2R1A, CYFIP1, MATR3, TUBB6, HNRNPA2B1, RPS6, PSMC2, EIF3L, HNRNPR, IMMT, PHB2, RPS8, PTRF, RPL10A, PARP1, HIST1H1E, LMNB1, PA2G4, HNRNPF, ITGB1, NUMA1, SRSF6, TGM2, OGDH, PDIA3, RPL24, PHGDH, IPO5, TSR1, TRIP6, YBX1, SMARCA4, ATAD3A, RPL19, CCT5, PGAM5, SEC16A, AJUBA, PSMC5, UPF1, RPL15, XRN2, RPL13A, PSMC6, CNN2, HDAC1, HDAC2, SFN, SUPT16H, RBBP7, PRDX6, SEPT2, UQCRC2, MVD, MYH10, PLOD2, PSMD6, ADSS, PAICS, FUBP1, CIAPIN1, SFXN1, PSMA5, RPL9, DNAJC10, PTBP1, ANXA5, KPNA2, WDR1, C11orf84, H2AFY, JUN, RTN4, RPL14, H1FX, IGFBP7, ACTL6A, RPL17, ZYX, PSMB4, TWF1, HIST1H1B, TK1, CDC20, RAN, RPL21, SV2B, HN1LC11orf70CUL3, CUL2, COPS5, FUS, CCT6B, TPM2, TAB1, CCT3


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for YAP1_C11orf70


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for YAP1_C11orf70


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneYAP1C0027819Neuroblastoma1CTD_human
HgeneYAP1C0919267ovarian neoplasm1CTD_human
HgeneYAP1C1168401Squamous cell carcinoma of the head and neck1CTD_human