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Fusion gene ID: 42236 |
FusionGeneSummary for XRN1_SMYD3 |
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Fusion gene information | Fusion gene name: XRN1_SMYD3 | Fusion gene ID: 42236 | Hgene | Tgene | Gene symbol | XRN1 | SMYD3 | Gene ID | 54464 | 64754 |
Gene name | 5'-3' exoribonuclease 1 | SET and MYND domain containing 3 | |
Synonyms | SEP1 | KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 | |
Cytomap | 3q23 | 1q44 | |
Type of gene | protein-coding | protein-coding | |
Description | 5'-3' exoribonuclease 1strand-exchange protein 1 homolog | histone-lysine N-methyltransferase SMYD3SET and MYND domain-containing protein 3bA74P14.1 (novel protein)zinc finger MYND domain-containing protein 1zinc finger protein, subfamily 3A (MYND domain containing), 1zinc finger, MYND domain containing 1 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q8IZH2 | Q9H7B4 | |
Ensembl transtripts involved in fusion gene | ENST00000264951, ENST00000392981, ENST00000463916, ENST00000544157, ENST00000465074, | ENST00000541742, ENST00000490107, ENST00000388985, ENST00000366517, ENST00000403792, | |
Fusion gene scores | * DoF score | 6 X 5 X 6=180 | 17 X 9 X 13=1989 |
# samples | 7 | 31 | |
** MAII score | log2(7/180*10)=-1.36257007938471 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(31/1989*10)=-2.68170315555951 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: XRN1 [Title/Abstract] AND SMYD3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | GBM | TCGA-14-1402-02A | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000264951 | ENST00000541742 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000264951 | ENST00000490107 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000264951 | ENST00000388985 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-5UTR | ENST00000264951 | ENST00000366517 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-intron | ENST00000264951 | ENST00000403792 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000392981 | ENST00000541742 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000392981 | ENST00000490107 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000392981 | ENST00000388985 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-5UTR | ENST00000392981 | ENST00000366517 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-intron | ENST00000392981 | ENST00000403792 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000463916 | ENST00000541742 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000463916 | ENST00000490107 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000463916 | ENST00000388985 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-5UTR | ENST00000463916 | ENST00000366517 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-intron | ENST00000463916 | ENST00000403792 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000544157 | ENST00000541742 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000544157 | ENST00000490107 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000544157 | ENST00000388985 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-5UTR | ENST00000544157 | ENST00000366517 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-intron | ENST00000544157 | ENST00000403792 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000465074 | ENST00000541742 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000465074 | ENST00000490107 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000465074 | ENST00000388985 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-5UTR | ENST00000465074 | ENST00000366517 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-intron | ENST00000465074 | ENST00000403792 | XRN1 | chr3 | 142166712 | - | SMYD3 | chr1 | 246093239 | - |
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FusionProtFeatures for XRN1_SMYD3 |
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Hgene | Tgene |
XRN1 | SMYD3 |
Major 5'-3' exoribonuclease involved in mRNA decay.Required for the 5'-3'-processing of the G4 tetraplex-containingDNA and RNA substrates. The kinetic of hydrolysis is faster for G4RNA tetraplex than for G4 DNA tetraplex and monomeric RNAtetraplex. Binds to RNA and DNA (By similarity). Plays a role inreplication-dependent histone mRNA degradation. May act as a tumorsuppressor protein in osteogenic sarcoma (OGS).{ECO:0000250|UniProtKB:P97789, ECO:0000269|PubMed:18172165}. | Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but notmonomethylation (PubMed:15235609, PubMed:22419068). Alsomethylates 'Lys-5' of histone H4 (PubMed:22419068). Plays animportant role in transcriptional activation as a member of an RNApolymerase complex (PubMed:15235609). Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences (PubMed:15235609).{ECO:0000269|PubMed:15235609, ECO:0000269|PubMed:22419068}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000388985 | - | 4 | 12 | 205_206 | 177 | 429 | Region | S-adenosyl-L-methionine binding |
Tgene | >SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000490107 | - | 4 | 12 | 205_206 | 118 | 370 | Region | S-adenosyl-L-methionine binding |
Tgene | >SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000541742 | - | 4 | 12 | 205_206 | 118 | 370 | Region | S-adenosyl-L-methionine binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000388985 | - | 4 | 12 | 4_240 | 177 | 429 | Domain | SET |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000490107 | - | 4 | 12 | 4_240 | 118 | 370 | Domain | SET |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000541742 | - | 4 | 12 | 4_240 | 118 | 370 | Domain | SET |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000388985 | - | 4 | 12 | 14_16 | 177 | 429 | Region | S-adenosyl-L-methionine binding |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000490107 | - | 4 | 12 | 14_16 | 118 | 370 | Region | S-adenosyl-L-methionine binding |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000541742 | - | 4 | 12 | 14_16 | 118 | 370 | Region | S-adenosyl-L-methionine binding |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000388985 | - | 4 | 12 | 49_87 | 177 | 429 | Zinc finger | MYND-type |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000490107 | - | 4 | 12 | 49_87 | 118 | 370 | Zinc finger | MYND-type |
Tgene | SMYD3 | chr3:142166712 | chr1:246093239 | ENST00000541742 | - | 4 | 12 | 49_87 | 118 | 370 | Zinc finger | MYND-type |
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FusionGeneSequence for XRN1_SMYD3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD >In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD >In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_277aa MGVPKFYRWISERYPCLSEVVKEHQVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDM LMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC >In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC >In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_831nt ATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCT TTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGT TCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATG CTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGAT GCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGG GAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGAC TGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTC CCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAAT CTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGAC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_1172nt ATGGTCGGCCGGGCGGTGTGTTGTCATCCGCGGAGCGACGACCGGAGGCTGCGGCGGAGCCCCGGCGGGGCGTTTGGTTTCGGTTTGGCC CTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGT GAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTT GCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGA GGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTG TTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAAT TGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATAT CAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCG GACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCA AGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGA TTTGATTCTACTTTTAGAAGAATGCGACGCCAACATCAGAGCATCCTAAGGGAACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTG AATGCCTTATTGAGGTCACACACTCTATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAAT AAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAGCACGATTATAATAAATTCAAAACATTTGGTTGAGGATGCCA >In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_1170nt ATGGTCGGCCGGGCGGTGTGTTGTCATCCGCGGAGCGACGACCGGAGGCTGCGGCGGAGCCCCGGCGGGGCGTTTGGTTTCGGTTTGGCC CTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGT GAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTT GCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGA GGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTG TTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAAT TGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATAT CAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCG GACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCA AGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGA TTTGATTCTACTTTTAGAAGAATGCGACGCCAACATCAGAGCATCCTAAGGGAACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTG AATGCCTTATTGAGGTCACACACTCTATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAAT AAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAGCACGATTATAATAAATTCAAAACATTTGGTTGAGGATGCCA >In-frame_XRN1_ENST00000264951_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_949nt ATGGTCGGCCGGGCGGTGTGTTGTCATCCGCGGAGCGACGACCGGAGGCTGCGGCGGAGCCCCGGCGGGGCGTTTGGTTTCGGTTTGGCC CTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGT GAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTT GCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGA GGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTG TTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAAT TGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATAT CAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCG GACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCA AGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGA >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_1102nt CGTTTGGTTTCGGTTTGGCCCTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTAT CCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGC CTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTC CGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAG TACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTT CAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAAT TCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAA GCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTT GGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGA GAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGACGCCAACATCAGAGCATCCTAAGGGAACGCAGTCAGAGGGAAA TACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACACACTCTATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTT CCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAGCACGATTATAATAAATTCAAA >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_1100nt CGTTTGGTTTCGGTTTGGCCCTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTAT CCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGC CTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTC CGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAG TACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTT CAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAAT TCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAA GCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTT GGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGA GAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGACGCCAACATCAGAGCATCCTAAGGGAACGCAGTCAGAGGGAAA TACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACACACTCTATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTT CCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAGCACGATTATAATAAATTCAAA >In-frame_XRN1_ENST00000392981_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_879nt CGTTTGGTTTCGGTTTGGCCCTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGATGGATCTCAGAGCGGTAT CCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGC CTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTC CGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAG TACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTT CAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAAT TCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAA GCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTT GGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGA >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000541742_chr1_246093239_-_1120nt GGCGGAGCCCCGGCGGGGCGTTTGGTTTCGGTTTGGCCCTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGA TGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATG CAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCAC CTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGG AAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAG CAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAG GCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAAC CTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGG GTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATG AGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGACGCCAACATCAGAGCATCCTAAGGG AACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACACACTCTATGCTTTGTTAGCTGTGTGAACCTCT CCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAGCAC >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000490107_chr1_246093239_-_1118nt GGCGGAGCCCCGGCGGGGCGTTTGGTTTCGGTTTGGCCCTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGA TGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATG CAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCAC CTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGG AAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAG CAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAG GCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAAC CTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGG GTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATG AGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGACGCCAACATCAGAGCATCCTAAGGG AACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACACACTCTATGCTTTGTTAGCTGTGTGAACCTCT CCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAGCAC >In-frame_XRN1_ENST00000463916_chr3_142166712_-_SMYD3_ENST00000388985_chr1_246093239_-_897nt GGCGGAGCCCCGGCGGGGCGTTTGGTTTCGGTTTGGCCCTGACTGGGATTAGTGTTGACGATCGAAATGGGAGTCCCCAAGTTTTACAGA TGGATCTCAGAGCGGTATCCCTGTCTCAGCGAAGTGGTGAAAGAGCATCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATG CAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCAC CTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGG AAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAG CAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAG GCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAAC CTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGG GTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATG |
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FusionGenePPI for XRN1_SMYD3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
XRN1 | ALDOA, BAG6, SMARCD2, CHD4, PABPC4, AP1G2, LSM4, CCT5, UPF1, UPF2, UPF3A, MLH1, MYC, SIRT7, SKIV2L, LDHA, VWA5B2, STAM2, NDUFA13, HEATR1, SPATA20, NDUFB10, NDUFB9, WAPAL, DPP7, HNRNPA1, PPP2CA, PSMB5, KATNB1, POLD2, MAN2C1, FADS1, TMEM50A, MTCH2, SRRM2, C1GALT1, ANGPTL6, PRADC1, MFSD5, CD97, B3GALT6, C1orf85, CBX5, LINC01541, PLEKHG2, RBMX, RNF187, SNHG1, LEPR, HERC2P4, CTSH, ATP5G2, DNASE2, SDHB, LGALS3BP, CTSB, DCP1A, EXOSC8, DXO, EXOSC6, DCP1B, EXOSC10, ZFP36, SKIV2L2, EXOSC1, TARDBP, HECW2, RPA1, RPA2, RPA3, BMI1, SCRN2, NTRK1, RPS4X, RPS7, SYNCRIP, ALYREF, DDX24, RPL5, IFI16, MED4, SSX2IP, PCM1, CC2D2A, CEP97, KIAA0753, CEP104, CEP120, CEP152, CEP128, CEP135, CEP44, CEP89, NINL, POC1A, STIL, CENPJ, XPO1, PSMC1, TUBG1, QSOX2, ZNF131, CDH1, FGF3, NAGK, RBM4, ADPRH, FGF8 | SMYD3 | MEST, HELZ, POLR2A, HSP90AA1, HIST3H3, ESR1, EZH2, EED, APP, CAMK2B, NDUFAB1, NFYB, CYP39A1, VANGL1, H3F3C, TRIT1, ZNF557, CDC37, HSP90AB1, HSP90AB4P, HSP90AB3P, HSP90AA5P, MAGED4B, KDM3B, RCAN3, PLCB3, TRMT2A, KMT2E |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for XRN1_SMYD3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for XRN1_SMYD3 |
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Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | SMYD3 | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |