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Fusion gene ID: 42096 |
FusionGeneSummary for WTAP_CBR4 |
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Fusion gene information | Fusion gene name: WTAP_CBR4 | Fusion gene ID: 42096 | Hgene | Tgene | Gene symbol | WTAP | CBR4 | Gene ID | 9589 | 84869 |
Gene name | WT1 associated protein | carbonyl reductase 4 | |
Synonyms | Mum2 | SDR45C1 | |
Cytomap | 6q25.3 | 4q32.3 | |
Type of gene | protein-coding | protein-coding | |
Description | pre-mRNA-splicing regulator WTAPPNAS-132Wilms tumor 1 associated proteinWilms' tumour 1-associating proteinfemale-lethal(2)D homologhFL(2)Dputative pre-mRNA splicing regulator female-lethal(2D)wilms tumor 1-associating protein | carbonyl reductase family member 43-ketoacyl-[acyl-carrier-protein] reductase beta subunit3-oxoacyl-[acyl-carrier-protein] reductaseKAR beta subunitcarbonic reductase 4quinone reductase CBR4short chain dehydrogenase/reductase family 45C member 1 | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | Q15007 | Q8N4T8 | |
Ensembl transtripts involved in fusion gene | ENST00000358372, ENST00000337387, ENST00000494513, | ENST00000509108, ENST00000306193, ENST00000504480, | |
Fusion gene scores | * DoF score | 3 X 3 X 4=36 | 2 X 2 X 2=8 |
# samples | 5 | 3 | |
** MAII score | log2(5/36*10)=0.473931188332412 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/8*10)=1.90689059560852 | |
Context | PubMed: WTAP [Title/Abstract] AND CBR4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CBR4 | GO:0051290 | protein heterotetramerization | 25203508 |
Tgene | CBR4 | GO:0055114 | oxidation-reduction process | 25203508 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF930782 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - | ||
ChiTaRS3.1 | BF930048 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000358372 | ENST00000509108 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
5CDS-intron | ENST00000358372 | ENST00000306193 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
5CDS-intron | ENST00000358372 | ENST00000504480 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
5CDS-intron | ENST00000337387 | ENST00000509108 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
5CDS-intron | ENST00000337387 | ENST00000306193 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
5CDS-intron | ENST00000337387 | ENST00000504480 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
intron-intron | ENST00000494513 | ENST00000509108 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
intron-intron | ENST00000494513 | ENST00000306193 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
intron-intron | ENST00000494513 | ENST00000504480 | WTAP | chr6 | 160169280 | + | CBR4 | chr4 | 169917007 | - |
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FusionProtFeatures for WTAP_CBR4 |
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Hgene | Tgene |
WTAP | CBR4 |
Associated component of the WMM complex, a complex thatmediates N6-methyladenosine (m6A) methylation of RNAs, amodification that plays a role in the efficiency of mRNA splicingand RNA processing (PubMed:29507755). Required for accumulation ofMETTL3 and METTL14 to nuclear speckle (PubMed:24316715,PubMed:24407421, PubMed:24981863). Acts as a mRNA splicingregulator (PubMed:12444081). Regulates G2/M cell-cycle transitionby binding to the 3' UTR of CCNA2, which enhances its stability(PubMed:17088532). Impairs WT1 DNA-binding ability and inhibitsexpression of WT1 target genes (PubMed:17095724).{ECO:0000269|PubMed:12444081, ECO:0000269|PubMed:17088532,ECO:0000269|PubMed:17095724, ECO:0000269|PubMed:24316715,ECO:0000269|PubMed:24407421, ECO:0000269|PubMed:24981863,ECO:0000269|PubMed:29507755}. | The heterotetramer with HSD17B8 has NADH-dependent 3-ketoacyl-acyl carrier protein reductase activity, and therebyplays a role in mitochondrial fatty acid biosynthesis(PubMed:19571038, PubMed:25203508). Within the heterotetramer,HSD17B8 binds NADH; CBR4 binds NADPD (PubMed:25203508). Thehomotetramer has NADPH-dependent quinone reductase activity(PubMed:19000905). Both homotetramer and the heterotetramer havebroad substrate specificity and can reduce 9,10-phenanthrenequinone, 1,4-benzoquinone and various other o-quinonesand p-quinones (in vitro) (PubMed:19000905, PubMed:19571038,PubMed:25203508). {ECO:0000269|PubMed:19000905,ECO:0000269|PubMed:19571038, ECO:0000269|PubMed:25203508}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for WTAP_CBR4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for WTAP_CBR4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for WTAP_CBR4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for WTAP_CBR4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |