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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 42096

FusionGeneSummary for WTAP_CBR4

check button Fusion gene summary
Fusion gene informationFusion gene name: WTAP_CBR4
Fusion gene ID: 42096
HgeneTgene
Gene symbol

WTAP

CBR4

Gene ID

9589

84869

Gene nameWT1 associated proteincarbonyl reductase 4
SynonymsMum2SDR45C1
Cytomap

6q25.3

4q32.3

Type of geneprotein-codingprotein-coding
Descriptionpre-mRNA-splicing regulator WTAPPNAS-132Wilms tumor 1 associated proteinWilms' tumour 1-associating proteinfemale-lethal(2)D homologhFL(2)Dputative pre-mRNA splicing regulator female-lethal(2D)wilms tumor 1-associating proteincarbonyl reductase family member 43-ketoacyl-[acyl-carrier-protein] reductase beta subunit3-oxoacyl-[acyl-carrier-protein] reductaseKAR beta subunitcarbonic reductase 4quinone reductase CBR4short chain dehydrogenase/reductase family 45C member 1
Modification date2018052320180522
UniProtAcc

Q15007

Q8N4T8

Ensembl transtripts involved in fusion geneENST00000358372, ENST00000337387, 
ENST00000494513, 
ENST00000509108, 
ENST00000306193, ENST00000504480, 
Fusion gene scores* DoF score3 X 3 X 4=362 X 2 X 2=8
# samples 53
** MAII scorelog2(5/36*10)=0.473931188332412
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(3/8*10)=1.90689059560852
Context

PubMed: WTAP [Title/Abstract] AND CBR4 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneCBR4

GO:0051290

protein heterotetramerization

25203508

TgeneCBR4

GO:0055114

oxidation-reduction process

25203508


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BF930782WTAPchr6

160169280

+CBR4chr4

169917007

-
ChiTaRS3.1BF930048WTAPchr6

160169280

+CBR4chr4

169917007

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000358372ENST00000509108WTAPchr6

160169280

+CBR4chr4

169917007

-
5CDS-intronENST00000358372ENST00000306193WTAPchr6

160169280

+CBR4chr4

169917007

-
5CDS-intronENST00000358372ENST00000504480WTAPchr6

160169280

+CBR4chr4

169917007

-
5CDS-intronENST00000337387ENST00000509108WTAPchr6

160169280

+CBR4chr4

169917007

-
5CDS-intronENST00000337387ENST00000306193WTAPchr6

160169280

+CBR4chr4

169917007

-
5CDS-intronENST00000337387ENST00000504480WTAPchr6

160169280

+CBR4chr4

169917007

-
intron-intronENST00000494513ENST00000509108WTAPchr6

160169280

+CBR4chr4

169917007

-
intron-intronENST00000494513ENST00000306193WTAPchr6

160169280

+CBR4chr4

169917007

-
intron-intronENST00000494513ENST00000504480WTAPchr6

160169280

+CBR4chr4

169917007

-

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FusionProtFeatures for WTAP_CBR4


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
WTAP

Q15007

CBR4

Q8N4T8

Associated component of the WMM complex, a complex thatmediates N6-methyladenosine (m6A) methylation of RNAs, amodification that plays a role in the efficiency of mRNA splicingand RNA processing (PubMed:29507755). Required for accumulation ofMETTL3 and METTL14 to nuclear speckle (PubMed:24316715,PubMed:24407421, PubMed:24981863). Acts as a mRNA splicingregulator (PubMed:12444081). Regulates G2/M cell-cycle transitionby binding to the 3' UTR of CCNA2, which enhances its stability(PubMed:17088532). Impairs WT1 DNA-binding ability and inhibitsexpression of WT1 target genes (PubMed:17095724).{ECO:0000269|PubMed:12444081, ECO:0000269|PubMed:17088532,ECO:0000269|PubMed:17095724, ECO:0000269|PubMed:24316715,ECO:0000269|PubMed:24407421, ECO:0000269|PubMed:24981863,ECO:0000269|PubMed:29507755}. The heterotetramer with HSD17B8 has NADH-dependent 3-ketoacyl-acyl carrier protein reductase activity, and therebyplays a role in mitochondrial fatty acid biosynthesis(PubMed:19571038, PubMed:25203508). Within the heterotetramer,HSD17B8 binds NADH; CBR4 binds NADPD (PubMed:25203508). Thehomotetramer has NADPH-dependent quinone reductase activity(PubMed:19000905). Both homotetramer and the heterotetramer havebroad substrate specificity and can reduce 9,10-phenanthrenequinone, 1,4-benzoquinone and various other o-quinonesand p-quinones (in vitro) (PubMed:19000905, PubMed:19571038,PubMed:25203508). {ECO:0000269|PubMed:19000905,ECO:0000269|PubMed:19571038, ECO:0000269|PubMed:25203508}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for WTAP_CBR4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for WTAP_CBR4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for WTAP_CBR4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for WTAP_CBR4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource