|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 41812 |
FusionGeneSummary for WDR1_STX4 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: WDR1_STX4 | Fusion gene ID: 41812 | Hgene | Tgene | Gene symbol | WDR1 | STX4 | Gene ID | 9948 | 6810 |
| Gene name | WD repeat domain 1 | syntaxin 4 | |
| Synonyms | AIP1|HEL-S-52|NORI-1 | STX4A|p35-2 | |
| Cytomap | 4p16.1 | 16p11.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | WD repeat-containing protein 1actin-interacting protein 1epididymis secretory protein Li 52 | syntaxin-4renal carcinoma antigen NY-REN-31syntaxin 4A (placental) | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | O75083 | Q12846 | |
| Ensembl transtripts involved in fusion gene | ENST00000499869, ENST00000382451, ENST00000382452, ENST00000515743, ENST00000502702, | ENST00000493902, ENST00000394998, ENST00000313843, | |
| Fusion gene scores | * DoF score | 4 X 7 X 2=56 | 2 X 2 X 1=4 |
| # samples | 7 | 2 | |
| ** MAII score | log2(7/56*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/4*10)=2.32192809488736 | |
| Context | PubMed: WDR1 [Title/Abstract] AND STX4 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | WDR1 | GO:0030834 | regulation of actin filament depolymerization | 15629458 |
| Hgene | WDR1 | GO:0043297 | apical junction assembly | 25792565 |
| Hgene | WDR1 | GO:0045199 | maintenance of epithelial cell apical/basal polarity | 25792565 |
| Tgene | STX4 | GO:0033194 | response to hydroperoxide | 22226963 |
| Tgene | STX4 | GO:0035774 | positive regulation of insulin secretion involved in cellular response to glucose stimulus | 24552216 |
| Tgene | STX4 | GO:0048284 | organelle fusion | 20434989 |
| Tgene | STX4 | GO:0060291 | long-term synaptic potentiation | 20434989 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BQ346391 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3UTR | ENST00000499869 | ENST00000493902 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000499869 | ENST00000394998 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000499869 | ENST00000313843 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000382451 | ENST00000493902 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000382451 | ENST00000394998 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000382451 | ENST00000313843 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000382452 | ENST00000493902 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000382452 | ENST00000394998 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000382452 | ENST00000313843 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000515743 | ENST00000493902 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000515743 | ENST00000394998 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000515743 | ENST00000313843 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000502702 | ENST00000493902 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000502702 | ENST00000394998 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
| intron-3UTR | ENST00000502702 | ENST00000313843 | WDR1 | chr4 | 10087865 | + | STX4 | chr16 | 31045423 | - |
Top |
FusionProtFeatures for WDR1_STX4 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| WDR1 | STX4 |
| Induces disassembly of actin filaments in conjunctionwith ADF/cofilin family proteins (PubMed:15629458). Enhancescofilin-mediated actin severing (By similarity). Involved incytokinesis. Involved in chemotactic cell migration by restrictinglamellipodial membrane protrusions (PubMed:18494608). Involved inmyocardium sarcomere organization. Required for cardiomyocytegrowth and maintenance (By similarity). Involved in megakaryocytematuration and platelet shedding. Required for the establishmentof planar cell polarity (PCP) during follicular epitheliumdevelopment and for cell shape changes during PCP; the functionseems to implicate cooperation with CFL1 and/or DSTN/ADF. Involvedin the generation/maintenance of cortical tension (By similarity).Involved in assembly and maintenance of epithelial apical celljunctions and plays a role in the organization of theperijunctional actomyosin belt (PubMed:25792565).{ECO:0000250|UniProtKB:O88342, ECO:0000250|UniProtKB:Q9W7F2,ECO:0000269|PubMed:15629458, ECO:0000269|PubMed:18494608,ECO:0000269|PubMed:25792565}. | Plasma membrane t-SNARE that mediates docking oftransport vesicles. Necessary for the translocation of SLC2A4 fromintracellular vesicles to the plasma membrane. Together with STXB3and VAMP2, may also play a role in docking/fusion of intracellularGLUT4-containing vesicles with the cell surface in adipocytes (Bysimilarity). May also play a role in docking of synaptic vesiclesat presynaptic active zones. {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for WDR1_STX4 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for WDR1_STX4 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for WDR1_STX4 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for WDR1_STX4 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | WDR1 | C0021368 | Inflammation | 1 | CTD_human |
| Hgene | WDR1 | C0029456 | Osteoporosis | 1 | CTD_human |
| Hgene | WDR1 | C0040034 | Thrombocytopenia | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|