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Fusion gene ID: 41807 |
FusionGeneSummary for WDR17_LTA4H |
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Fusion gene information | Fusion gene name: WDR17_LTA4H | Fusion gene ID: 41807 | Hgene | Tgene | Gene symbol | WDR17 | LTA4H | Gene ID | 116966 | 4048 |
Gene name | WD repeat domain 17 | leukotriene A4 hydrolase | |
Synonyms | - | - | |
Cytomap | 4q34.2 | 12q23.1 | |
Type of gene | protein-coding | protein-coding | |
Description | WD repeat-containing protein 17 | leukotriene A-4 hydrolaseLTA-4 hydrolasetesticular secretory protein Li 27 | |
Modification date | 20180403 | 20180523 | |
UniProtAcc | Q8IZU2 | P09960 | |
Ensembl transtripts involved in fusion gene | ENST00000508596, ENST00000393643, ENST00000280190, ENST00000507824, ENST00000509792, | ENST00000228740, ENST00000552789, ENST00000413268, ENST00000548375, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 6 X 6 X 3=108 |
# samples | 1 | 5 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(5/108*10)=-1.11103131238874 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: WDR17 [Title/Abstract] AND LTA4H [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | LTA4H | GO:0019370 | leukotriene biosynthetic process | 9774412|15078870 |
Tgene | LTA4H | GO:0043171 | peptide catabolic process | 9774412|15078870|18804029 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LGG | TCGA-HT-8106-01A | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000508596 | ENST00000228740 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-3CDS | ENST00000508596 | ENST00000552789 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-3CDS | ENST00000508596 | ENST00000413268 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-intron | ENST00000508596 | ENST00000548375 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-3CDS | ENST00000393643 | ENST00000228740 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-3CDS | ENST00000393643 | ENST00000552789 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-3CDS | ENST00000393643 | ENST00000413268 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-intron | ENST00000393643 | ENST00000548375 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
Frame-shift | ENST00000280190 | ENST00000228740 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
Frame-shift | ENST00000280190 | ENST00000552789 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
Frame-shift | ENST00000280190 | ENST00000413268 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
5CDS-intron | ENST00000280190 | ENST00000548375 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
Frame-shift | ENST00000507824 | ENST00000228740 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
Frame-shift | ENST00000507824 | ENST00000552789 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
Frame-shift | ENST00000507824 | ENST00000413268 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
5CDS-intron | ENST00000507824 | ENST00000548375 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-3CDS | ENST00000509792 | ENST00000228740 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-3CDS | ENST00000509792 | ENST00000552789 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-3CDS | ENST00000509792 | ENST00000413268 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
intron-intron | ENST00000509792 | ENST00000548375 | WDR17 | chr4 | 177017736 | + | LTA4H | chr12 | 96413018 | - |
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FusionProtFeatures for WDR17_LTA4H |
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Hgene | Tgene |
WDR17 | LTA4H |
Epoxide hydrolase that catalyzes the final step in thebiosynthesis of the proinflammatory mediator leukotriene B4. Hasalso aminopeptidase activity. {ECO:0000269|PubMed:11917124,ECO:0000269|PubMed:12207002, ECO:0000269|PubMed:15078870,ECO:0000269|PubMed:18804029, ECO:0000269|PubMed:1897988,ECO:0000269|PubMed:1975494, ECO:0000269|PubMed:2244921}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for WDR17_LTA4H |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for WDR17_LTA4H |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
WDR17 | LTA4H | GH1, MCC, TMEM62, DDA1, UBA5, HDAC5, ELAVL1, SIRT7, TINF2, SIRT1, ZNF593, ALDOA, FKBP2, GALK2, IDH1, PGM1, PRPF4, SPR, TRAP1, NAPRT, TAGLN2, NTRK1, KRAS |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for WDR17_LTA4H |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | LTA4H | P09960 | DB01197 | Captopril | Leukotriene A-4 hydrolase | small molecule | approved |
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RelatedDiseases for WDR17_LTA4H |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | WDR17 | C0023903 | Liver neoplasms | 1 | CTD_human |
Tgene | LTA4H | C0004153 | Atherosclerosis | 1 | CTD_human |
Tgene | LTA4H | C0011570 | Mental Depression | 1 | PSYGENET |
Tgene | LTA4H | C0011581 | Depressive disorder | 1 | PSYGENET |
Tgene | LTA4H | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |