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Fusion gene ID: 41800 |
FusionGeneSummary for WDPCP_SERTAD2 |
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Fusion gene information | Fusion gene name: WDPCP_SERTAD2 | Fusion gene ID: 41800 | Hgene | Tgene | Gene symbol | WDPCP | SERTAD2 | Gene ID | 51057 | 9792 |
Gene name | WD repeat containing planar cell polarity effector | SERTA domain containing 2 | |
Synonyms | BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ | Sei-2|TRIP-Br2|TRIPBR2 | |
Cytomap | 2p15 | 2p14 | |
Type of gene | protein-coding | protein-coding | |
Description | WD repeat-containing and planar cell polarity effector protein fritz homologBardet-Biedl syndrome 15 proteinWD repeat-containing protein C2orf86ciliogenesis and planar polarity effector 5 | SERTA domain-containing protein 2transcriptional regulator interacting with the PHD-bromodomain 2transcriptional regulator interacting with the PHS-bromodomain 2 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | O95876 | Q14140 | |
Ensembl transtripts involved in fusion gene | ENST00000272321, ENST00000409199, ENST00000409120, ENST00000398544, ENST00000409562, ENST00000409835, | ENST00000313349, ENST00000476805, | |
Fusion gene scores | * DoF score | 4 X 4 X 3=48 | 4 X 1 X 4=16 |
# samples | 4 | 4 | |
** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/16*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: WDPCP [Title/Abstract] AND SERTAD2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | SERTAD2 | GO:0030308 | negative regulation of cell growth | 16098148 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | CESC | TCGA-VS-A8EC-01A | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000272321 | ENST00000313349 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000272321 | ENST00000476805 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000409199 | ENST00000313349 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000409199 | ENST00000476805 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000409120 | ENST00000313349 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000409120 | ENST00000476805 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000398544 | ENST00000313349 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000398544 | ENST00000476805 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000409562 | ENST00000313349 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5CDS-5UTR | ENST00000409562 | ENST00000476805 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5UTR-5UTR | ENST00000409835 | ENST00000313349 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
5UTR-5UTR | ENST00000409835 | ENST00000476805 | WDPCP | chr2 | 63664555 | - | SERTAD2 | chr2 | 64864009 | - |
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FusionProtFeatures for WDPCP_SERTAD2 |
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Hgene | Tgene |
WDPCP | SERTAD2 |
Probable effector of the planar cell polarity signalingpathway which regulates the septin cytoskeleton in bothciliogenesis and collective cell movements. Together with FUZ andWDPCP proposed to function as core component of the CPLANE(ciliogenesis and planar polarity effectors) complex involved inthe recruitment of peripheral IFT-A proteins to basal bodies (Bysimilarity). {ECO:0000250|UniProtKB:Q32NR9,ECO:0000250|UniProtKB:Q8C456}. | Acts at E2F-responsive promoters as coregulator tointegrate signals provided by PHD- and/or bromodomain-containingtranscription factors. May act as coactivator as well ascorepressor of E2F1-TFDP1 and E2F4-TFDP1 complexes on E2Fconsensus binding sites, which would activate or inhibit E2F-target genes expression. Modulates fat storage by down-regulatingthe expression of key genes involved in adipocyte lipolysis,thermogenesis and oxidative metabolism.{ECO:0000269|PubMed:11331592}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for WDPCP_SERTAD2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for WDPCP_SERTAD2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
WDPCP | TRIM25 | SERTAD2 | KAT2B, SUPT7L, TRIM28, XPO1, ELAVL1, TRIM25 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for WDPCP_SERTAD2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for WDPCP_SERTAD2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | WDPCP | C1857587 | Orstavik Lindemann Solberg syndrome | 1 | UNIPROT |