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Fusion gene ID: 41366 |
FusionGeneSummary for VAT1_HNRNPA1 |
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Fusion gene information | Fusion gene name: VAT1_HNRNPA1 | Fusion gene ID: 41366 | Hgene | Tgene | Gene symbol | VAT1 | HNRNPA1 | Gene ID | 10493 | 3178 |
Gene name | vesicle amine transport 1 | heterogeneous nuclear ribonucleoprotein A1 | |
Synonyms | VATI | ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 | |
Cytomap | 17q21.31 | 12q13.13 | |
Type of gene | protein-coding | protein-coding | |
Description | synaptic vesicle membrane protein VAT-1 homologmembrane protein of cholinergic synaptic vesiclesvesicle amine transport protein 1 homolog (T. californica) | heterogeneous nuclear ribonucleoprotein A1helix-destabilizing proteinheterogeneous nuclear ribonucleoprotein A1B proteinheterogeneous nuclear ribonucleoprotein B2 proteinheterogeneous nuclear ribonucleoprotein core protein A1hnRNP core protein A1-lik | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q99536 | P09651 | |
Ensembl transtripts involved in fusion gene | ENST00000355653, ENST00000587173, ENST00000420567, | ENST00000546500, ENST00000340913, ENST00000330752, ENST00000547276, ENST00000551803, | |
Fusion gene scores | * DoF score | 8 X 6 X 2=96 | 5 X 5 X 4=100 |
# samples | 9 | 5 | |
** MAII score | log2(9/96*10)=-0.0931094043914815 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/100*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: VAT1 [Title/Abstract] AND HNRNPA1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | HNRNPA1 | GO:0032212 | positive regulation of telomere maintenance via telomerase | 23935072 |
Tgene | HNRNPA1 | GO:0051168 | nuclear export | 8521471 |
Tgene | HNRNPA1 | GO:0051170 | import into nucleus | 8521471 |
Tgene | HNRNPA1 | GO:1903936 | cellular response to sodium arsenite | 27694260 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AI339411 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000355653 | ENST00000546500 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000355653 | ENST00000340913 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000355653 | ENST00000330752 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000355653 | ENST00000547276 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000355653 | ENST00000551803 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000587173 | ENST00000546500 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000587173 | ENST00000340913 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000587173 | ENST00000330752 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000587173 | ENST00000547276 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000587173 | ENST00000551803 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000420567 | ENST00000546500 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000420567 | ENST00000340913 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000420567 | ENST00000330752 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000420567 | ENST00000547276 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
intron-intron | ENST00000420567 | ENST00000551803 | VAT1 | chr17 | 41166905 | + | HNRNPA1 | chr12 | 54676659 | - |
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FusionProtFeatures for VAT1_HNRNPA1 |
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Hgene | Tgene |
VAT1 | HNRNPA1 |
Possesses ATPase activity (By similarity). Plays a partin calcium-regulated keratinocyte activation in epidermal repairmechanisms. Has no effect on cell proliferation. Negativelyregulates mitochondrial fusion in cooperation with mitofusinproteins (MFN1-2). {ECO:0000250, ECO:0000269|PubMed:12898150,ECO:0000269|PubMed:17105775, ECO:0000269|PubMed:19508442}. | Involved in the packaging of pre-mRNA into hnRNPparticles, transport of poly(A) mRNA from the nucleus to thecytoplasm and may modulate splice site selection(PubMed:17371836). May bind to specific miRNA hairpins(PubMed:28431233). {ECO:0000269|PubMed:17371836,ECO:0000269|PubMed:28431233}. (Microbial infection) May play a role in HCV RNAreplication. {ECO:0000269|PubMed:17229681}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for VAT1_HNRNPA1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for VAT1_HNRNPA1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for VAT1_HNRNPA1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for VAT1_HNRNPA1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | HNRNPA1 | C3715156 | AMYOTROPHIC LATERAL SCLEROSIS 20 | 2 | UNIPROT |
Tgene | HNRNPA1 | C3809469 | INCLUSION BODY MYOPATHY WITH EARLY-ONSET PAGET DISEASE WITH OR WITHOUT FRONTOTEMPORAL DEMENTIA 3 | 2 | UNIPROT |
Tgene | HNRNPA1 | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Tgene | HNRNPA1 | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |