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Fusion gene ID: 41239 |
FusionGeneSummary for UST_TRIML1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: UST_TRIML1 | Fusion gene ID: 41239 | Hgene | Tgene | Gene symbol | UST | TRIML1 | Gene ID | 10090 | 339976 |
| Gene name | uronyl 2-sulfotransferase | tripartite motif family like 1 | |
| Synonyms | 2OST | RNF209 | |
| Cytomap | 6q25.1 | 4q35.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | uronyl 2-sulfotransferasedermatan/chondroitin sulfate 2-sulfotransferase | probable E3 ubiquitin-protein ligase TRIML1RING finger protein 209RING-type E3 ubiquitin transferase TRIML1 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q9Y2C2 | Q8N9V2 | |
| Ensembl transtripts involved in fusion gene | ENST00000367463, ENST00000466695, | ENST00000332517, ENST00000507581, | |
| Fusion gene scores | * DoF score | 8 X 6 X 4=192 | 1 X 1 X 1=1 |
| # samples | 8 | 1 | |
| ** MAII score | log2(8/192*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: UST [Title/Abstract] AND TRIML1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | SARC | TCGA-FX-A3NK-01A | UST | chr6 | 149208165 | + | TRIML1 | chr4 | 189063406 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000367463 | ENST00000332517 | UST | chr6 | 149208165 | + | TRIML1 | chr4 | 189063406 | + |
| 5CDS-intron | ENST00000367463 | ENST00000507581 | UST | chr6 | 149208165 | + | TRIML1 | chr4 | 189063406 | + |
| intron-3CDS | ENST00000466695 | ENST00000332517 | UST | chr6 | 149208165 | + | TRIML1 | chr4 | 189063406 | + |
| intron-intron | ENST00000466695 | ENST00000507581 | UST | chr6 | 149208165 | + | TRIML1 | chr4 | 189063406 | + |
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FusionProtFeatures for UST_TRIML1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| UST | TRIML1 |
| Sulfotransferase that catalyzes the transfer of sulfateto the position 2 of uronyl residues. Has mainly activity towardiduronyl residues in dermatan sulfate, and weaker activity towardglucuronyl residues of chondroitin sulfate. Has no activity towarddesulfated N-resulfated heparin. | Probable E3 ubiquitin-protein ligase which plays animportant role in blastocyst development.{ECO:0000250|UniProtKB:Q8BVP1}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | UST | chr6:149208165 | chr4:189063406 | ENST00000367463 | + | 2 | 8 | 1_49 | 97 | 407 | Topological domain | Cytoplasmic |
| Hgene | UST | chr6:149208165 | chr4:189063406 | ENST00000367463 | + | 2 | 8 | 50_70 | 97 | 407 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
| Tgene | >TRIML1 | chr6:149208165 | chr4:189063406 | ENST00000332517 | + | 1 | 6 | 184_237 | 168 | 469 | Coiled coil | Ontology_term=ECO:0000255 |
| Tgene | >TRIML1 | chr6:149208165 | chr4:189063406 | ENST00000332517 | + | 1 | 6 | 267_468 | 168 | 469 | Domain | B30.2/SPRY |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >UST | chr6:149208165 | chr4:189063406 | ENST00000367463 | + | 2 | 8 | 71_406 | 97 | 407 | Topological domain | Lumenal |
| Tgene | TRIML1 | chr6:149208165 | chr4:189063406 | ENST00000332517 | + | 1 | 6 | 133_158 | 168 | 469 | Coiled coil | Ontology_term=ECO:0000255 |
| Tgene | TRIML1 | chr6:149208165 | chr4:189063406 | ENST00000332517 | + | 1 | 6 | 16_57 | 168 | 469 | Zinc finger | RING-type |
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FusionGeneSequence for UST_TRIML1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_UST_ENST00000367463_chr6_149208165_+_TRIML1_ENST00000332517_chr4_189063406_+_398aa MKKKQQHPGGGADPWPHGAPMGGAPPGLGSWKRRVPLLPFLRFSLRDYGFCMATLLVFCLGSLLYQLSGGPPRFLLDLRQYLGNSTYLDD HGPPPSKEETKTCKQVVVSEYMKMHQFLKEEEQLQLQLLEQEEKENMRKLRNNEIKLTQQIRSLSKMIAQIESSSQSSAFESLEEVRGAL ERSEPLLLQCPEATTTELSLCRITGMKEMLRKFSTEITLDPATANAYLVLSEDLKSVKYGGSRQQLPDNPERFDQSATVLGTQIFTSGRH YWEVEVGNKTEWEVGICKDSVSRKGNLPKPPGDLFSLIGLKIGDDYSLWVSSPLKGQHVREPVCKVGVFLDYESGHIAFYNGTDESLIYS |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_UST_ENST00000367463_chr6_149208165_+_TRIML1_ENST00000332517_chr4_189063406_+_1194nt ATGAAGAAGAAGCAGCAGCATCCCGGCGGCGGCGCGGATCCCTGGCCCCATGGGGCCCCTATGGGGGGCGCCCCTCCGGGCCTGGGCAGC TGGAAGCGTCGGGTGCCCCTGCTGCCTTTCCTGCGCTTCTCCCTCCGGGACTACGGCTTCTGCATGGCCACCCTGCTGGTCTTCTGCCTG GGCTCCCTCCTCTATCAGCTCAGCGGGGGACCCCCTCGCTTCCTGCTCGACCTGCGGCAGTACTTGGGAAATTCCACTTACTTGGATGAC CATGGACCACCTCCTAGTAAGGAAGAAACAAAGACTTGTAAACAGGTTGTTGTGTCAGAATACATGAAAATGCACCAGTTCCTGAAGGAA GAGGAGCAGCTGCAACTCCAGCTACTAGAACAGGAAGAGAAAGAGAACATGAGGAAGCTGAGGAACAATGAGATCAAACTGACCCAGCAA ATCAGAAGCCTAAGCAAAATGATCGCACAGATTGAGTCCTCAAGTCAAAGCTCGGCTTTCGAATCTCTTGAGGAAGTGAGAGGAGCCCTG GAAAGGAGCGAGCCACTCTTGCTTCAGTGTCCAGAGGCCACCACCACAGAGCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATGCTA AGAAAATTCAGCACGGAGATAACGCTGGACCCAGCCACAGCTAATGCCTATCTCGTGTTGTCGGAGGATCTGAAGAGTGTGAAATATGGG GGAAGCAGACAGCAGCTACCCGACAACCCGGAAAGATTTGACCAGTCTGCGACTGTGCTGGGTACTCAGATCTTCACCAGTGGGAGACAC TACTGGGAGGTGGAGGTGGGAAACAAGACCGAGTGGGAAGTGGGCATCTGCAAGGACTCTGTGAGCAGAAAGGGGAATCTCCCCAAGCCA CCTGGGGACCTGTTCTCACTAATAGGTTTAAAAATCGGAGATGATTACAGCCTCTGGGTCTCGTCACCTTTGAAAGGTCAGCACGTCAGA GAGCCTGTGTGTAAGGTTGGTGTCTTCCTGGACTATGAATCTGGACATATAGCATTCTACAACGGGACGGATGAATCCCTCATCTACAGC TTCCCGCAGGCTTCTTTCCAAGAGGCCCTCAGGCCTATCTTTTCCCCCTGCCTCCCAAATGAGGGGACAAACACAGACCCTCTCACCATC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_UST_ENST00000367463_chr6_149208165_+_TRIML1_ENST00000332517_chr4_189063406_+_1547nt CGGCCCTCCCCATGTGCAGCCGGCCAGCCGGGCTCTCCTCCTCGCGGCGGATGGGTGACCTTTTCCTGGCACGGGCAGGCTGTGGGAGGC AGCGGAGCAGGCGATGAAGAAGAAGCAGCAGCATCCCGGCGGCGGCGCGGATCCCTGGCCCCATGGGGCCCCTATGGGGGGCGCCCCTCC GGGCCTGGGCAGCTGGAAGCGTCGGGTGCCCCTGCTGCCTTTCCTGCGCTTCTCCCTCCGGGACTACGGCTTCTGCATGGCCACCCTGCT GGTCTTCTGCCTGGGCTCCCTCCTCTATCAGCTCAGCGGGGGACCCCCTCGCTTCCTGCTCGACCTGCGGCAGTACTTGGGAAATTCCAC TTACTTGGATGACCATGGACCACCTCCTAGTAAGGAAGAAACAAAGACTTGTAAACAGGTTGTTGTGTCAGAATACATGAAAATGCACCA GTTCCTGAAGGAAGAGGAGCAGCTGCAACTCCAGCTACTAGAACAGGAAGAGAAAGAGAACATGAGGAAGCTGAGGAACAATGAGATCAA ACTGACCCAGCAAATCAGAAGCCTAAGCAAAATGATCGCACAGATTGAGTCCTCAAGTCAAAGCTCGGCTTTCGAATCTCTTGAGGAAGT GAGAGGAGCCCTGGAAAGGAGCGAGCCACTCTTGCTTCAGTGTCCAGAGGCCACCACCACAGAGCTGAGTCTGTGCCGCATCACGGGAAT GAAGGAGATGCTAAGAAAATTCAGCACGGAGATAACGCTGGACCCAGCCACAGCTAATGCCTATCTCGTGTTGTCGGAGGATCTGAAGAG TGTGAAATATGGGGGAAGCAGACAGCAGCTACCCGACAACCCGGAAAGATTTGACCAGTCTGCGACTGTGCTGGGTACTCAGATCTTCAC CAGTGGGAGACACTACTGGGAGGTGGAGGTGGGAAACAAGACCGAGTGGGAAGTGGGCATCTGCAAGGACTCTGTGAGCAGAAAGGGGAA TCTCCCCAAGCCACCTGGGGACCTGTTCTCACTAATAGGTTTAAAAATCGGAGATGATTACAGCCTCTGGGTCTCGTCACCTTTGAAAGG TCAGCACGTCAGAGAGCCTGTGTGTAAGGTTGGTGTCTTCCTGGACTATGAATCTGGACATATAGCATTCTACAACGGGACGGATGAATC CCTCATCTACAGCTTCCCGCAGGCTTCTTTCCAAGAGGCCCTCAGGCCTATCTTTTCCCCCTGCCTCCCAAATGAGGGGACAAACACAGA CCCTCTCACCATCTGCTCACTGAACAGCCACGTCTGAGGGGCGTGCCCTGAGCCGTCACAGCGGGCGATGTCTGAGACCAAGACACAACT ATTAAGACGATGAAGGCATCGACAGTATTAATGTCAGGTGATCTGAAATAAACTCCCGTAACCCCACCCCACCCCCAAGAGTTTCCATTA ACTTGATCCCATTATGAACAGCCACATTACACAATCAACTTCAACCCCAATAGAAGAGAGCTGATCATATTCTGTGTCTTTAAGTAAATG |
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FusionGenePPI for UST_TRIML1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| UST | ELAVL1, CUL3, MRAP2, SLC27A6, INHBE, PPT2, CANX, DCAKD, PON2, GLG1, GOLIM4, XYLT2, MAN1A1, JAG2, OCIAD1, LDLR, IMPAD1, ERO1LB, OMA1 | TRIML1 | USP5, APP, RBCK1, MNAT1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for UST_TRIML1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for UST_TRIML1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | UST | C0014175 | Endometriosis | 1 | CTD_human |
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