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Fusion gene ID: 41190 |
FusionGeneSummary for USP6NL_FAM107B |
Fusion gene summary |
Fusion gene information | Fusion gene name: USP6NL_FAM107B | Fusion gene ID: 41190 | Hgene | Tgene | Gene symbol | USP6NL | FAM107B | Gene ID | 9712 | 83641 |
Gene name | USP6 N-terminal like | family with sequence similarity 107 member B | |
Synonyms | RNTRE|TRE2NL|USP6NL-IT1 | C10orf45|HITS | |
Cytomap | 10p14 | 10p13 | |
Type of gene | protein-coding | protein-coding | |
Description | USP6 N-terminal-like proteinrelated to the N-terminus of tre | protein FAM107BFAM107B/CDNF fusionheat shock-inducible tumor small protein | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q92738 | Q9H098 | |
Ensembl transtripts involved in fusion gene | ENST00000609104, ENST00000277575, ENST00000379237, ENST00000443016, ENST00000609853, | ENST00000181796, ENST00000378470, ENST00000468747, ENST00000378467, ENST00000378465, ENST00000378458, ENST00000478076, ENST00000378462, ENST00000496330, ENST00000479731, ENST00000471815, | |
Fusion gene scores | * DoF score | 17 X 12 X 9=1836 | 9 X 7 X 6=378 |
# samples | 18 | 9 | |
** MAII score | log2(18/1836*10)=-3.35049724708413 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/378*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: USP6NL [Title/Abstract] AND FAM107B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | USP6NL | GO:0043547 | positive regulation of GTPase activity | 17562788 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LUAD | TCGA-44-6145-01A | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000609104 | ENST00000181796 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000378470 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000468747 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000378467 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000378465 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000378458 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000478076 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000378462 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000496330 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000479731 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000609104 | ENST00000471815 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
In-frame | ENST00000277575 | ENST00000181796 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000378470 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000468747 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000378467 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000378465 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000378458 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000478076 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000378462 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000496330 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000479731 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000277575 | ENST00000471815 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
In-frame | ENST00000379237 | ENST00000181796 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000378470 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000468747 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000378467 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000378465 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000378458 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000478076 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000378462 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000496330 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000479731 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
5CDS-intron | ENST00000379237 | ENST00000471815 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-3CDS | ENST00000443016 | ENST00000181796 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000378470 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000468747 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000378467 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000378465 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000378458 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000478076 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000378462 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000496330 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000479731 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000443016 | ENST00000471815 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-3CDS | ENST00000609853 | ENST00000181796 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000378470 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000468747 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000378467 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000378465 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000378458 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000478076 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000378462 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000496330 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000479731 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
intron-intron | ENST00000609853 | ENST00000471815 | USP6NL | chr10 | 11560534 | - | FAM107B | chr10 | 14709690 | - |
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FusionProtFeatures for USP6NL_FAM107B |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
USP6NL | FAM107B |
Acts as a GTPase-activating protein for RAB5A and RAB43.Involved in receptor trafficking. In complex with EPS8 inhibitsinternalization of EGFR. Involved in retrograde transport from theendocytic pathway to the Golgi apparatus. Involved in thetransport of Shiga toxin from early and recycling endosomes to thetrans-Golgi network. Required for structural integrity of theGolgi complex. {ECO:0000269|PubMed:11099046,ECO:0000269|PubMed:17562788, ECO:0000269|PubMed:17684057}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000378458 | - | 0 | 5 | 61_112 | -183 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000378462 | - | 0 | 4 | 61_112 | -60 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000378465 | - | 0 | 4 | 61_112 | -87 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000378467 | - | 0 | 5 | 61_112 | -101 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000378470 | - | 0 | 4 | 61_112 | -96 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000468747 | - | 0 | 4 | 61_112 | -69 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000478076 | - | 0 | 4 | 61_112 | -74 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000479731 | - | 0 | 4 | 61_112 | -48 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >FAM107B | chr10:11560534 | chr10:14709690 | ENST00000496330 | - | 0 | 5 | 61_112 | -83 | 132 | Coiled coil | Ontology_term=ECO:0000255 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >USP6NL | chr10:11560534 | chr10:14709690 | ENST00000277575 | - | 4 | 14 | 100_292 | 82 | 846 | Domain | Rab-GAP TBC |
Hgene | >USP6NL | chr10:11560534 | chr10:14709690 | ENST00000379237 | - | 4 | 14 | 100_292 | 88 | 852 | Domain | Rab-GAP TBC |
Tgene | FAM107B | chr10:11560534 | chr10:14709690 | ENST00000181796 | - | 0 | 5 | 61_112 | 137 | 307 | Coiled coil | Ontology_term=ECO:0000255 |
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FusionGeneSequence for USP6NL_FAM107B |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_USP6NL_ENST00000609104_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_235aa MNSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKVTDRFGFLHEEELPDHNVAVEREEEFREEPKCLELEQKMTSDSPPED IDHKDSYLITRSIMAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKK >In-frame_USP6NL_ENST00000277575_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_252aa MRTEAVVNSQGQTDYLTKDSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKVTDRFGFLHEEELPDHNVAVEREEEFREEP KCLELEQKMTSDSPPEDIDHKDSYLITRSIMAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKR >In-frame_USP6NL_ENST00000379237_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_258aa MIQVLQIVKELVTPSRQKAATVKEDSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKVTDRFGFLHEEELPDHNVAVEREE EFREEPKCLELEQKMTSDSPPEDIDHKDSYLITRSIMAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQ |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_USP6NL_ENST00000609104_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_705nt ATGAATTCAGACCAGGATGTAGCACTCAAACTTGCCCAGGAGCGAGCTGAAATAGTTGCTAAATATGACAGAGGACGAGAAGGTGCAGAG ATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACAGATAGATTTGGCTTTTTACATGAGGAGGAGCTCCCAGATCATAAT GTGGCTGTGGAACGGGAAGAAGAATTTCGAGAAGAACCTAAATGCCTCGAGCTGGAGCAGAAAATGACATCAGACAGCCCACCTGAGGAT ATTGACCATAAGGACTCATATCTCATTACAAGAAGCATCATGGCCGAGCCAGACTACATAGAAGATGACAATCCTGAACTCATTAGGCCT CAGAAACTGATCAATCCTGTAAAAACCTCCCGGAACCATCAAGATCTTCACAGAGAACTTCTTATGAATCAAAAAAGGGGTCTTGCTCCT CAGAACAAACCAGAATTGCAGAAGGTGATGGAAAAAAGAAAACGAGACCAAGTAATAAAGCAGAAGGAAGAAGAAGCACAGAAGAAGAAA TCTGACTTGGAAATAGAGCTATTAAAACGGCAGCAGAAGTTGGAGCAGCTTGAACTTGAGAAGCAGAAATTGCAAGAAGAGCAAGAAAAT >In-frame_USP6NL_ENST00000277575_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_756nt ATGAGGACTGAAGCTGTTGTTAATTCCCAAGGCCAGACTGATTATCTCACAAAGGATTCAGACCAGGATGTAGCACTCAAACTTGCCCAG GAGCGAGCTGAAATAGTTGCTAAATATGACAGAGGACGAGAAGGTGCAGAGATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAA GTCACAGATAGATTTGGCTTTTTACATGAGGAGGAGCTCCCAGATCATAATGTGGCTGTGGAACGGGAAGAAGAATTTCGAGAAGAACCT AAATGCCTCGAGCTGGAGCAGAAAATGACATCAGACAGCCCACCTGAGGATATTGACCATAAGGACTCATATCTCATTACAAGAAGCATC ATGGCCGAGCCAGACTACATAGAAGATGACAATCCTGAACTCATTAGGCCTCAGAAACTGATCAATCCTGTAAAAACCTCCCGGAACCAT CAAGATCTTCACAGAGAACTTCTTATGAATCAAAAAAGGGGTCTTGCTCCTCAGAACAAACCAGAATTGCAGAAGGTGATGGAAAAAAGA AAACGAGACCAAGTAATAAAGCAGAAGGAAGAAGAAGCACAGAAGAAGAAATCTGACTTGGAAATAGAGCTATTAAAACGGCAGCAGAAG TTGGAGCAGCTTGAACTTGAGAAGCAGAAATTGCAAGAAGAGCAAGAAAATGCCCCCGAGTTTGTGAAGGTGAAAGGCAATCTCAGGAGA >In-frame_USP6NL_ENST00000379237_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_774nt ATGATTCAAGTCTTGCAGATTGTAAAGGAGCTGGTGACACCATCAAGGCAAAAAGCAGCCACAGTGAAGGAAGATTCAGACCAGGATGTA GCACTCAAACTTGCCCAGGAGCGAGCTGAAATAGTTGCTAAATATGACAGAGGACGAGAAGGTGCAGAGATTGAACCTTGGGAAGATGCT GATTACCTTGTTTACAAAGTCACAGATAGATTTGGCTTTTTACATGAGGAGGAGCTCCCAGATCATAATGTGGCTGTGGAACGGGAAGAA GAATTTCGAGAAGAACCTAAATGCCTCGAGCTGGAGCAGAAAATGACATCAGACAGCCCACCTGAGGATATTGACCATAAGGACTCATAT CTCATTACAAGAAGCATCATGGCCGAGCCAGACTACATAGAAGATGACAATCCTGAACTCATTAGGCCTCAGAAACTGATCAATCCTGTA AAAACCTCCCGGAACCATCAAGATCTTCACAGAGAACTTCTTATGAATCAAAAAAGGGGTCTTGCTCCTCAGAACAAACCAGAATTGCAG AAGGTGATGGAAAAAAGAAAACGAGACCAAGTAATAAAGCAGAAGGAAGAAGAAGCACAGAAGAAGAAATCTGACTTGGAAATAGAGCTA TTAAAACGGCAGCAGAAGTTGGAGCAGCTTGAACTTGAGAAGCAGAAATTGCAAGAAGAGCAAGAAAATGCCCCCGAGTTTGTGAAGGTG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_USP6NL_ENST00000609104_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_3730nt CGGCCGCTGCGGTGACGGTTGGCGGCGGCCGGTGAGGCGGGCGGGGCCGGAGGCGCGGAGGCGGGGTCCCGGGCGAGCCGCCCTGGGAGG CGGGGGCCGTTTCCATAGCGGCGGCAGGAGGTGTCGCGCCGGGGAACTTCCTGGTTCCCGGGCTCGGCTTCGCCGGGATCCTCTTGGAAG GGAAACAATGGGGCGGAGGGCACTGCGGTAGCCGCCGCCGCCGCCGCGCCGCGCCGCGCCGGATCTGCTCGGCCGCCCGGGACCGCCAGC TCTGTCCGCTGCCCACAGCCTAGCAGTCGGGACCGTACTGAGGACATGTATTCCTCTGAGAAACCTTGGACAGCAGATTTTGGTTTAATA TCTGATTGGGACAACATTCAGACCCATTTCCAGTCATGAATTCAGACCAGGATGTAGCACTCAAACTTGCCCAGGAGCGAGCTGAAATAG TTGCTAAATATGACAGAGGACGAGAAGGTGCAGAGATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACAGATAGATTTG GCTTTTTACATGAGGAGGAGCTCCCAGATCATAATGTGGCTGTGGAACGGGAAGAAGAATTTCGAGAAGAACCTAAATGCCTCGAGCTGG AGCAGAAAATGACATCAGACAGCCCACCTGAGGATATTGACCATAAGGACTCATATCTCATTACAAGAAGCATCATGGCCGAGCCAGACT ACATAGAAGATGACAATCCTGAACTCATTAGGCCTCAGAAACTGATCAATCCTGTAAAAACCTCCCGGAACCATCAAGATCTTCACAGAG AACTTCTTATGAATCAAAAAAGGGGTCTTGCTCCTCAGAACAAACCAGAATTGCAGAAGGTGATGGAAAAAAGAAAACGAGACCAAGTAA TAAAGCAGAAGGAAGAAGAAGCACAGAAGAAGAAATCTGACTTGGAAATAGAGCTATTAAAACGGCAGCAGAAGTTGGAGCAGCTTGAAC TTGAGAAGCAGAAATTGCAAGAAGAGCAAGAAAATGCCCCCGAGTTTGTGAAGGTGAAAGGCAATCTCAGGAGAACAGGCCAAGAAGTCG CCCAAGCCCAGGAGTCCTAGGCTGAGGCTGCACCAAGACCTCGTGTGTCACCCCACAGAGCTGTCTGTGGGTGCCTTCTCAATCTCAGGG CAAAAGCCCCTGGAGAATATTTCAGCCAGCAGAGAATTTTGACTTGCAGTAGGATTTGGTTTGATTTTCCTACGATCTGGGTGGATGCCT TGCCTGTGACAGTTGCAGTTCCTATTCGCCAAATGAAGGGCAGTGCCCCGCACGTAAGTTGGAATGATGGACCTGTGTTCAGAGACTTAA CAGAACCAACAAGCAAAACAAGTGAGAACAGGAAAAAGGAAGAGGACACTGGAATCAATTCTTGAGAGTTGCACTACTTGGTTTTTCTTC CATTCCAAGTTTCGTGGGACCCAGAGCCTTTTTTCTTTTAAAAGCTAAAAAACAAGTGTTTAATTCCTCTTTTTGTTATCTGTTAGATAA TTGAGATCACCTAGAAATGCGTTTAATCTGTTCACTCACTGTAAATTTTGAGGACCCAGAATTGTCTTGTTTAATTTATACTTTCACCCC TGTTGCAGTTAACACCAGAGAAGGAACGTGAATGTCGAGCACAGCCACTACCCTTGTTGGCACTTAATTTAGAAATAGGGTGAGAAGTTT AAAAGCCCATCTTGATTTTATTTTCATTCCTTTTGGTTCTCTGTGTAATAATAGCAGGCTACATAGTGACATTCCAGTTCCAAGAAGGTA CATCCTGTCCATTCATTAATTGCTTTGATTACTAGGAGGGTTTCTGTTCAGTTTTGTTTTTAAATGTCTTGCTGATCTAGTTCTTTCAGA TGGAATAACCTTCCAGTCCCTTAGAGAGTGGAACTAGTCCATATAACCCAGCTTCAGTAGCAAAAGTAGAAGCCGCCACATCTTTTCATT TCTCCAAGAGGAGAGTGGGGAAGGTTCCCATGACCAGCTGGGCAGTCAGGATTTCTCTAGGCATTCTAATGTGAAATAAGTGTAGACTGC TGTCAAGGAGGCTTCATCAGAAGATGTATAGCATTTGAATGTCTAATGATAATGCATATCATTAGAATCCAAGCTTTGAAAATTTCTGAT TAATGCTCATGTATTTCTTTATCTTTGTTTTTCCTTGTGAAGAAAGACTTTCACCACTGTCTGAGTGATGATGCTGTTGATAAGGATGAT GTCGATGACTACTATATTGCATCTCTCAGGAACAGCTGATGGGAAGGGAGGGGCTGCTGAGTTCCCTTGTTCTAGCTAGCAGCACGCTCC TCAGAGAGGGGGCCGAGTTACAGACAGCAGCCGCATTCTCATGCAAAATTAGTTTTAAACTGCTAGTGTGGGCATCGGTACCTTTTGCCT GGGTGATACCGAAGAATTGTTGAGGATTTAGTATGCTCCGTAGAGACAGTTCAGCCAGTCATTTCTGCATTGGAGAGACTTCTCATACTT TCTTTGAAGACTCATAGAAAGCTGGATCTAGAGCTTTTGAATCCTTAATTAGCACAGTAGAAATTAGCTTTCTATGGGAATGCTTTAGTG TTAGCAGTTGACAATTAGGCCCATATTCAATCTGAATGGGAACAAAAGTAAATGCAATGATAATATACTGCTAGTTAGAGAAACATGTTA GTTGATTATACCTGAAATGGATTATTTATCTCATCAGCAAGTATTATTTGAATAAAATGAGAAATGCTTAAGAAAAATTGTTGCTCTACA GTAATTTGGTTTCGAAGAATGGAATGGTAACTATTTTTTCCCATCGTTCTTTTGAGAGAAGGAAGTGTGATGACTGATGATCTTGAAAAG CCCATTTCTGATTGCACGTTGACTGGAATTCTTTCTTTGTGTCTGTGGACTAGCGATGCTGTTTGTAAAATGAAGATTCGGGACTGGCTC ATATCTTTTTATCTAACTAGATGTCAGATCTTGAAATCTGTATTCTCGAAGCAATTCTGCCACTTGATCGTATTCACAGGGGCCCTGGTA GGCTCCTTTAGAAGGACCATTTCTGTTCCTAGAGCTTAACTAGAATTCATTCTTCACTGAAAAAAAAAAAAGTTACTTAAGAAAGCATTT CTTTCCTAATCTCACTCAAATCTGCAGAATTATTTGTAATTAGTAATACAAAATCTGGCCAAAAGGAGACTTGTAAATAGCGTAAAGTGG TGTCTTATGCTAAACGGTGGAATGTATAGGCAGAGAAGCTCTTTGAAGTTGTCAGATGAGCTGGGCTCACAAGCCTGATTCAAACAGGCT GTCGGTCTCCTCTCACCCCTTAATACTGTGCAGCCCAAACTCCTAGGACTCTTGAACATCTGAGCAGTTTTGTGCTTTGAGCCACTTTTT GACAAAAATGGCTCCATTTTTCCACAGCGTGGTTTTCTTAAAATAGTTTAATGTTTTATAGTCTCATAGTAGTAGTGTTGCTTTCTAAGC TATAACAGTCGACTTTATTCTTCTACTCTGAAAAATCTTGACTTGTTTGAGTGTATATAATATATATAAAGGGAGCCTTAATGGATTGGT TTTCATAATTTAATATTTTTTGTATTTGCTCTTGTATAATTGTTTTTAACGGAAAGTATTAAAGAATTGAGGGTGGAATTCTTAGAACCA >In-frame_USP6NL_ENST00000277575_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_3429nt ACTATAAAATAATAATGAAATCTTGGAATAGATAAGTTACTCTATGAGGACTGAAGCTGTTGTTAATTCCCAAGGCCAGACTGATTATCT CACAAAGGATTCAGACCAGGATGTAGCACTCAAACTTGCCCAGGAGCGAGCTGAAATAGTTGCTAAATATGACAGAGGACGAGAAGGTGC AGAGATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACAGATAGATTTGGCTTTTTACATGAGGAGGAGCTCCCAGATCA TAATGTGGCTGTGGAACGGGAAGAAGAATTTCGAGAAGAACCTAAATGCCTCGAGCTGGAGCAGAAAATGACATCAGACAGCCCACCTGA GGATATTGACCATAAGGACTCATATCTCATTACAAGAAGCATCATGGCCGAGCCAGACTACATAGAAGATGACAATCCTGAACTCATTAG GCCTCAGAAACTGATCAATCCTGTAAAAACCTCCCGGAACCATCAAGATCTTCACAGAGAACTTCTTATGAATCAAAAAAGGGGTCTTGC TCCTCAGAACAAACCAGAATTGCAGAAGGTGATGGAAAAAAGAAAACGAGACCAAGTAATAAAGCAGAAGGAAGAAGAAGCACAGAAGAA GAAATCTGACTTGGAAATAGAGCTATTAAAACGGCAGCAGAAGTTGGAGCAGCTTGAACTTGAGAAGCAGAAATTGCAAGAAGAGCAAGA AAATGCCCCCGAGTTTGTGAAGGTGAAAGGCAATCTCAGGAGAACAGGCCAAGAAGTCGCCCAAGCCCAGGAGTCCTAGGCTGAGGCTGC ACCAAGACCTCGTGTGTCACCCCACAGAGCTGTCTGTGGGTGCCTTCTCAATCTCAGGGCAAAAGCCCCTGGAGAATATTTCAGCCAGCA GAGAATTTTGACTTGCAGTAGGATTTGGTTTGATTTTCCTACGATCTGGGTGGATGCCTTGCCTGTGACAGTTGCAGTTCCTATTCGCCA AATGAAGGGCAGTGCCCCGCACGTAAGTTGGAATGATGGACCTGTGTTCAGAGACTTAACAGAACCAACAAGCAAAACAAGTGAGAACAG GAAAAAGGAAGAGGACACTGGAATCAATTCTTGAGAGTTGCACTACTTGGTTTTTCTTCCATTCCAAGTTTCGTGGGACCCAGAGCCTTT TTTCTTTTAAAAGCTAAAAAACAAGTGTTTAATTCCTCTTTTTGTTATCTGTTAGATAATTGAGATCACCTAGAAATGCGTTTAATCTGT TCACTCACTGTAAATTTTGAGGACCCAGAATTGTCTTGTTTAATTTATACTTTCACCCCTGTTGCAGTTAACACCAGAGAAGGAACGTGA ATGTCGAGCACAGCCACTACCCTTGTTGGCACTTAATTTAGAAATAGGGTGAGAAGTTTAAAAGCCCATCTTGATTTTATTTTCATTCCT TTTGGTTCTCTGTGTAATAATAGCAGGCTACATAGTGACATTCCAGTTCCAAGAAGGTACATCCTGTCCATTCATTAATTGCTTTGATTA CTAGGAGGGTTTCTGTTCAGTTTTGTTTTTAAATGTCTTGCTGATCTAGTTCTTTCAGATGGAATAACCTTCCAGTCCCTTAGAGAGTGG AACTAGTCCATATAACCCAGCTTCAGTAGCAAAAGTAGAAGCCGCCACATCTTTTCATTTCTCCAAGAGGAGAGTGGGGAAGGTTCCCAT GACCAGCTGGGCAGTCAGGATTTCTCTAGGCATTCTAATGTGAAATAAGTGTAGACTGCTGTCAAGGAGGCTTCATCAGAAGATGTATAG CATTTGAATGTCTAATGATAATGCATATCATTAGAATCCAAGCTTTGAAAATTTCTGATTAATGCTCATGTATTTCTTTATCTTTGTTTT TCCTTGTGAAGAAAGACTTTCACCACTGTCTGAGTGATGATGCTGTTGATAAGGATGATGTCGATGACTACTATATTGCATCTCTCAGGA ACAGCTGATGGGAAGGGAGGGGCTGCTGAGTTCCCTTGTTCTAGCTAGCAGCACGCTCCTCAGAGAGGGGGCCGAGTTACAGACAGCAGC CGCATTCTCATGCAAAATTAGTTTTAAACTGCTAGTGTGGGCATCGGTACCTTTTGCCTGGGTGATACCGAAGAATTGTTGAGGATTTAG TATGCTCCGTAGAGACAGTTCAGCCAGTCATTTCTGCATTGGAGAGACTTCTCATACTTTCTTTGAAGACTCATAGAAAGCTGGATCTAG AGCTTTTGAATCCTTAATTAGCACAGTAGAAATTAGCTTTCTATGGGAATGCTTTAGTGTTAGCAGTTGACAATTAGGCCCATATTCAAT CTGAATGGGAACAAAAGTAAATGCAATGATAATATACTGCTAGTTAGAGAAACATGTTAGTTGATTATACCTGAAATGGATTATTTATCT CATCAGCAAGTATTATTTGAATAAAATGAGAAATGCTTAAGAAAAATTGTTGCTCTACAGTAATTTGGTTTCGAAGAATGGAATGGTAAC TATTTTTTCCCATCGTTCTTTTGAGAGAAGGAAGTGTGATGACTGATGATCTTGAAAAGCCCATTTCTGATTGCACGTTGACTGGAATTC TTTCTTTGTGTCTGTGGACTAGCGATGCTGTTTGTAAAATGAAGATTCGGGACTGGCTCATATCTTTTTATCTAACTAGATGTCAGATCT TGAAATCTGTATTCTCGAAGCAATTCTGCCACTTGATCGTATTCACAGGGGCCCTGGTAGGCTCCTTTAGAAGGACCATTTCTGTTCCTA GAGCTTAACTAGAATTCATTCTTCACTGAAAAAAAAAAAAGTTACTTAAGAAAGCATTTCTTTCCTAATCTCACTCAAATCTGCAGAATT ATTTGTAATTAGTAATACAAAATCTGGCCAAAAGGAGACTTGTAAATAGCGTAAAGTGGTGTCTTATGCTAAACGGTGGAATGTATAGGC AGAGAAGCTCTTTGAAGTTGTCAGATGAGCTGGGCTCACAAGCCTGATTCAAACAGGCTGTCGGTCTCCTCTCACCCCTTAATACTGTGC AGCCCAAACTCCTAGGACTCTTGAACATCTGAGCAGTTTTGTGCTTTGAGCCACTTTTTGACAAAAATGGCTCCATTTTTCCACAGCGTG GTTTTCTTAAAATAGTTTAATGTTTTATAGTCTCATAGTAGTAGTGTTGCTTTCTAAGCTATAACAGTCGACTTTATTCTTCTACTCTGA AAAATCTTGACTTGTTTGAGTGTATATAATATATATAAAGGGAGCCTTAATGGATTGGTTTTCATAATTTAATATTTTTTGTATTTGCTC TTGTATAATTGTTTTTAACGGAAAGTATTAAAGAATTGAGGGTGGAATTCTTAGAACCAAAGTTATTCTTAATAAAAATCACCACATGCT >In-frame_USP6NL_ENST00000379237_chr10_11560534_-_FAM107B_ENST00000181796_chr10_14709690_-_3463nt GATGAAACCTGTTGGATTTCTAGAGGAAGCAGCTGGAGTCTTTGGCTTGTTAACTAGCAATGATTCAAGTCTTGCAGATTGTAAAGGAGC TGGTGACACCATCAAGGCAAAAAGCAGCCACAGTGAAGGAAGATTCAGACCAGGATGTAGCACTCAAACTTGCCCAGGAGCGAGCTGAAA TAGTTGCTAAATATGACAGAGGACGAGAAGGTGCAGAGATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACAGATAGAT TTGGCTTTTTACATGAGGAGGAGCTCCCAGATCATAATGTGGCTGTGGAACGGGAAGAAGAATTTCGAGAAGAACCTAAATGCCTCGAGC TGGAGCAGAAAATGACATCAGACAGCCCACCTGAGGATATTGACCATAAGGACTCATATCTCATTACAAGAAGCATCATGGCCGAGCCAG ACTACATAGAAGATGACAATCCTGAACTCATTAGGCCTCAGAAACTGATCAATCCTGTAAAAACCTCCCGGAACCATCAAGATCTTCACA GAGAACTTCTTATGAATCAAAAAAGGGGTCTTGCTCCTCAGAACAAACCAGAATTGCAGAAGGTGATGGAAAAAAGAAAACGAGACCAAG TAATAAAGCAGAAGGAAGAAGAAGCACAGAAGAAGAAATCTGACTTGGAAATAGAGCTATTAAAACGGCAGCAGAAGTTGGAGCAGCTTG AACTTGAGAAGCAGAAATTGCAAGAAGAGCAAGAAAATGCCCCCGAGTTTGTGAAGGTGAAAGGCAATCTCAGGAGAACAGGCCAAGAAG TCGCCCAAGCCCAGGAGTCCTAGGCTGAGGCTGCACCAAGACCTCGTGTGTCACCCCACAGAGCTGTCTGTGGGTGCCTTCTCAATCTCA GGGCAAAAGCCCCTGGAGAATATTTCAGCCAGCAGAGAATTTTGACTTGCAGTAGGATTTGGTTTGATTTTCCTACGATCTGGGTGGATG CCTTGCCTGTGACAGTTGCAGTTCCTATTCGCCAAATGAAGGGCAGTGCCCCGCACGTAAGTTGGAATGATGGACCTGTGTTCAGAGACT TAACAGAACCAACAAGCAAAACAAGTGAGAACAGGAAAAAGGAAGAGGACACTGGAATCAATTCTTGAGAGTTGCACTACTTGGTTTTTC TTCCATTCCAAGTTTCGTGGGACCCAGAGCCTTTTTTCTTTTAAAAGCTAAAAAACAAGTGTTTAATTCCTCTTTTTGTTATCTGTTAGA TAATTGAGATCACCTAGAAATGCGTTTAATCTGTTCACTCACTGTAAATTTTGAGGACCCAGAATTGTCTTGTTTAATTTATACTTTCAC CCCTGTTGCAGTTAACACCAGAGAAGGAACGTGAATGTCGAGCACAGCCACTACCCTTGTTGGCACTTAATTTAGAAATAGGGTGAGAAG TTTAAAAGCCCATCTTGATTTTATTTTCATTCCTTTTGGTTCTCTGTGTAATAATAGCAGGCTACATAGTGACATTCCAGTTCCAAGAAG GTACATCCTGTCCATTCATTAATTGCTTTGATTACTAGGAGGGTTTCTGTTCAGTTTTGTTTTTAAATGTCTTGCTGATCTAGTTCTTTC AGATGGAATAACCTTCCAGTCCCTTAGAGAGTGGAACTAGTCCATATAACCCAGCTTCAGTAGCAAAAGTAGAAGCCGCCACATCTTTTC ATTTCTCCAAGAGGAGAGTGGGGAAGGTTCCCATGACCAGCTGGGCAGTCAGGATTTCTCTAGGCATTCTAATGTGAAATAAGTGTAGAC TGCTGTCAAGGAGGCTTCATCAGAAGATGTATAGCATTTGAATGTCTAATGATAATGCATATCATTAGAATCCAAGCTTTGAAAATTTCT GATTAATGCTCATGTATTTCTTTATCTTTGTTTTTCCTTGTGAAGAAAGACTTTCACCACTGTCTGAGTGATGATGCTGTTGATAAGGAT GATGTCGATGACTACTATATTGCATCTCTCAGGAACAGCTGATGGGAAGGGAGGGGCTGCTGAGTTCCCTTGTTCTAGCTAGCAGCACGC TCCTCAGAGAGGGGGCCGAGTTACAGACAGCAGCCGCATTCTCATGCAAAATTAGTTTTAAACTGCTAGTGTGGGCATCGGTACCTTTTG CCTGGGTGATACCGAAGAATTGTTGAGGATTTAGTATGCTCCGTAGAGACAGTTCAGCCAGTCATTTCTGCATTGGAGAGACTTCTCATA CTTTCTTTGAAGACTCATAGAAAGCTGGATCTAGAGCTTTTGAATCCTTAATTAGCACAGTAGAAATTAGCTTTCTATGGGAATGCTTTA GTGTTAGCAGTTGACAATTAGGCCCATATTCAATCTGAATGGGAACAAAAGTAAATGCAATGATAATATACTGCTAGTTAGAGAAACATG TTAGTTGATTATACCTGAAATGGATTATTTATCTCATCAGCAAGTATTATTTGAATAAAATGAGAAATGCTTAAGAAAAATTGTTGCTCT ACAGTAATTTGGTTTCGAAGAATGGAATGGTAACTATTTTTTCCCATCGTTCTTTTGAGAGAAGGAAGTGTGATGACTGATGATCTTGAA AAGCCCATTTCTGATTGCACGTTGACTGGAATTCTTTCTTTGTGTCTGTGGACTAGCGATGCTGTTTGTAAAATGAAGATTCGGGACTGG CTCATATCTTTTTATCTAACTAGATGTCAGATCTTGAAATCTGTATTCTCGAAGCAATTCTGCCACTTGATCGTATTCACAGGGGCCCTG GTAGGCTCCTTTAGAAGGACCATTTCTGTTCCTAGAGCTTAACTAGAATTCATTCTTCACTGAAAAAAAAAAAAGTTACTTAAGAAAGCA TTTCTTTCCTAATCTCACTCAAATCTGCAGAATTATTTGTAATTAGTAATACAAAATCTGGCCAAAAGGAGACTTGTAAATAGCGTAAAG TGGTGTCTTATGCTAAACGGTGGAATGTATAGGCAGAGAAGCTCTTTGAAGTTGTCAGATGAGCTGGGCTCACAAGCCTGATTCAAACAG GCTGTCGGTCTCCTCTCACCCCTTAATACTGTGCAGCCCAAACTCCTAGGACTCTTGAACATCTGAGCAGTTTTGTGCTTTGAGCCACTT TTTGACAAAAATGGCTCCATTTTTCCACAGCGTGGTTTTCTTAAAATAGTTTAATGTTTTATAGTCTCATAGTAGTAGTGTTGCTTTCTA AGCTATAACAGTCGACTTTATTCTTCTACTCTGAAAAATCTTGACTTGTTTGAGTGTATATAATATATATAAAGGGAGCCTTAATGGATT GGTTTTCATAATTTAATATTTTTTGTATTTGCTCTTGTATAATTGTTTTTAACGGAAAGTATTAAAGAATTGAGGGTGGAATTCTTAGAA |
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FusionGenePPI for USP6NL_FAM107B |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
USP6NL | ACTN4, GRB2, APP, WWOX, SHMT2, NXF1, TMEM17, CCNA2, COMT, ANAPC15, UBE2S, CDH1 | FAM107B | ELAVL1, BAG3, U2AF2, TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for USP6NL_FAM107B |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for USP6NL_FAM107B |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | USP6NL | C0025202 | melanoma | 1 | CTD_human |