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Fusion gene ID: 40379 |
FusionGeneSummary for UBC_MYC |
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Fusion gene information | Fusion gene name: UBC_MYC | Fusion gene ID: 40379 | Hgene | Tgene | Gene symbol | UBC | MYC | Gene ID | 7316 | 5820 |
Gene name | ubiquitin C | Pvt1 oncogene | |
Synonyms | HMG20 | LINC00079|MIR1204HG|MYC|NCRNA00079|onco-lncRNA-100 | |
Cytomap | 12q24.31 | 8q24.21 | |
Type of gene | protein-coding | ncRNA | |
Description | polyubiquitin-C | CXCR4/PVT1 fusionHIST1H2BD/PVT1 fusionMIR1204, MIR1205, MIR1206 and MIR1207 hostOncogene PVT-1 (MYC activator)PVT1/CASC8 fusionPVT1/CCDC26 fusionPVT1/IFRD1 fusionPVT1/IRF2BP2 fusionPVT1/LINC00824 fusionPVT1/MYC fusionPVT1/NFIL3 fusionPVT1/NSMCE | |
Modification date | 20180523 | 20180520 | |
UniProtAcc | P0CG48 | P01106 | |
Ensembl transtripts involved in fusion gene | ENST00000536769, ENST00000538617, ENST00000546120, ENST00000339647, ENST00000536661, | ENST00000259523, ENST00000377970, ENST00000524013, | |
Fusion gene scores | * DoF score | 6 X 6 X 1=36 | 7 X 5 X 4=140 |
# samples | 6 | 7 | |
** MAII score | log2(6/36*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(7/140*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: UBC [Title/Abstract] AND MYC [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF766594 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000536769 | ENST00000259523 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000536769 | ENST00000377970 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000536769 | ENST00000524013 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000538617 | ENST00000259523 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000538617 | ENST00000377970 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000538617 | ENST00000524013 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000546120 | ENST00000259523 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000546120 | ENST00000377970 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000546120 | ENST00000524013 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000339647 | ENST00000259523 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000339647 | ENST00000377970 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000339647 | ENST00000524013 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000536661 | ENST00000259523 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000536661 | ENST00000377970 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
intron-3CDS | ENST00000536661 | ENST00000524013 | UBC | chr12 | 125399121 | + | MYC | chr8 | 128751111 | + |
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FusionProtFeatures for UBC_MYC |
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Hgene | Tgene |
UBC | MYC |
Transcription factor that binds DNA in a non-specificmanner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.Binds to the VEGFA promoter, promoting VEGFA production andsubsequent sprouting angiogenesis (PubMed:24940000).{ECO:0000269|PubMed:24940000, ECO:0000269|PubMed:25956029}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for UBC_MYC |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for UBC_MYC |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for UBC_MYC |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | MYC | P01106 | DB08813 | Nadroparin | Myc proto-oncogene protein | small molecule | approved|investigational |
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RelatedDiseases for UBC_MYC |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | MYC | C0009375 | Colonic Neoplasms | 4 | CTD_human |
Tgene | MYC | C0023904 | Liver Neoplasms, Experimental | 3 | CTD_human |
Tgene | MYC | C2239176 | Liver carcinoma | 3 | CTD_human |
Tgene | MYC | C0023903 | Liver neoplasms | 2 | CTD_human |
Tgene | MYC | C0033578 | Prostatic Neoplasms | 2 | CTD_human |
Tgene | MYC | C0038356 | Stomach Neoplasms | 2 | CTD_human |
Tgene | MYC | C0001418 | Adenocarcinoma | 1 | CTD_human |
Tgene | MYC | C0005695 | Bladder Neoplasm | 1 | CTD_human |
Tgene | MYC | C0007129 | Merkel cell carcinoma | 1 | CTD_human |
Tgene | MYC | C0007131 | Non-Small Cell Lung Carcinoma | 1 | CTD_human |
Tgene | MYC | C0007137 | Squamous cell carcinoma | 1 | CTD_human |
Tgene | MYC | C0007194 | Hypertrophic Cardiomyopathy | 1 | CTD_human |
Tgene | MYC | C0007621 | Neoplastic Cell Transformation | 1 | CTD_human |
Tgene | MYC | C0007873 | Uterine Cervical Neoplasm | 1 | CTD_human |
Tgene | MYC | C0008924 | Cleft Lip | 1 | CTD_human |
Tgene | MYC | C0008925 | Cleft Palate | 1 | CTD_human |
Tgene | MYC | C0014170 | Endometrial Neoplasms | 1 | CTD_human |
Tgene | MYC | C0015695 | Fatty Liver | 1 | CTD_human |
Tgene | MYC | C0017636 | Glioblastoma | 1 | CTD_human |
Tgene | MYC | C0018923 | Hemangiosarcoma | 1 | CTD_human |
Tgene | MYC | C0023467 | Leukemia, Myelocytic, Acute | 1 | CTD_human |
Tgene | MYC | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | MYC | C0024121 | Lung Neoplasms | 1 | CTD_human |
Tgene | MYC | C0025149 | Medulloblastoma | 1 | CTD_human |
Tgene | MYC | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
Tgene | MYC | C0027819 | Neuroblastoma | 1 | CTD_human |
Tgene | MYC | C0029463 | Osteosarcoma | 1 | CTD_human |
Tgene | MYC | C0030297 | Pancreatic Neoplasm | 1 | CTD_human |
Tgene | MYC | C0085413 | Polycystic Kidney, Autosomal Dominant | 1 | CTD_human |
Tgene | MYC | C0149721 | Left Ventricular Hypertrophy | 1 | CTD_human |
Tgene | MYC | C0152013 | Adenocarcinoma of lung (disorder) | 1 | CTD_human |
Tgene | MYC | C0206093 | Neuroectodermal Tumors | 1 | CTD_human |
Tgene | MYC | C0376628 | Chromosome Breakage | 1 | CTD_human |
Tgene | MYC | C0919267 | ovarian neoplasm | 1 | CTD_human |
Tgene | MYC | C3463824 | MYELODYSPLASTIC SYNDROME | 1 | CTD_human |