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Fusion gene ID: 40297 |
FusionGeneSummary for UBA1_FAT4 |
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Fusion gene information | Fusion gene name: UBA1_FAT4 | Fusion gene ID: 40297 | Hgene | Tgene | Gene symbol | UBA1 | FAT4 | Gene ID | 7317 | 79633 |
Gene name | ubiquitin like modifier activating enzyme 1 | FAT atypical cadherin 4 | |
Synonyms | A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X | CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 | |
Cytomap | Xp11.3 | 4q28.1 | |
Type of gene | protein-coding | protein-coding | |
Description | ubiquitin-like modifier-activating enzyme 1A1S9T and BN75 temperature sensitivity complementingPOC20 centriolar protein homologUBA1, ubiquitin-activating enzyme E1 homolog Atesticular secretory protein Li 63 | protocadherin Fat 4FAT tumor suppressor homolog 4cadherin family member 14cadherin-related family member 11fat-like cadherin protein FAT-Jputative protein product of Nbla00548 | |
Modification date | 20180523 | 20180520 | |
UniProtAcc | P22314 | Q6V0I7 | |
Ensembl transtripts involved in fusion gene | ENST00000377351, ENST00000335972, ENST00000490869, ENST00000377269, | ENST00000394329, ENST00000335110, | |
Fusion gene scores | * DoF score | 7 X 8 X 2=112 | 1 X 1 X 1=1 |
# samples | 8 | 1 | |
** MAII score | log2(8/112*10)=-0.485426827170242 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: UBA1 [Title/Abstract] AND FAT4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | UBA1 | GO:0006974 | cellular response to DNA damage stimulus | 22456334 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BX281972 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000377351 | ENST00000394329 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
intron-3CDS | ENST00000377351 | ENST00000335110 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
intron-3CDS | ENST00000335972 | ENST00000394329 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
intron-3CDS | ENST00000335972 | ENST00000335110 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
intron-3CDS | ENST00000490869 | ENST00000394329 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
intron-3CDS | ENST00000490869 | ENST00000335110 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
intron-3CDS | ENST00000377269 | ENST00000394329 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
intron-3CDS | ENST00000377269 | ENST00000335110 | UBA1 | chrX | 47064653 | + | FAT4 | chr4 | 126412752 | + |
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FusionProtFeatures for UBA1_FAT4 |
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Hgene | Tgene |
UBA1 | FAT4 |
Catalyzes the first step in ubiquitin conjugation tomark cellular proteins for degradation through the ubiquitin-proteasome system (PubMed:1606621, PubMed:1447181). Activatesubiquitin by first adenylating its C-terminal glycine residue withATP, and thereafter linking this residue to the side chain of acysteine residue in E1, yielding a ubiquitin-E1 thioester and freeAMP (PubMed:1447181). Essential for the formation of radiation-induced foci, timely DNA repair and for response to replicationstress. Promotes the recruitment of TP53BP1 and BRCA1 at DNAdamage sites (PubMed:22456334). {ECO:0000269|PubMed:1447181,ECO:0000269|PubMed:1606621, ECO:0000269|PubMed:22456334}. | Cadherins are calcium-dependent cell adhesion proteins.FAT4 plays a role in the maintenance of planar cell polarity aswell as in inhibition of YAP1-mediated neuroprogenitor cellproliferation and differentiation (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for UBA1_FAT4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for UBA1_FAT4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for UBA1_FAT4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for UBA1_FAT4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | UBA1 | C1844934 | Arthrogryposis multiplex congenita, distal, X-linked | 2 | CTD_human;ORPHANET;UNIPROT |
Hgene | UBA1 | C0007137 | Squamous cell carcinoma | 1 | CTD_human |
Tgene | FAT4 | C3809875 | VAN MALDERGEM SYNDROME 2 | 2 | UNIPROT |
Tgene | FAT4 | C0001418 | Adenocarcinoma | 1 | CTD_human |
Tgene | FAT4 | C0025202 | melanoma | 1 | CTD_human |
Tgene | FAT4 | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Tgene | FAT4 | C0279626 | Squamous cell carcinoma of esophagus | 1 | CTD_human |
Tgene | FAT4 | C1691228 | Cystic Kidney Diseases | 1 | CTD_human |
Tgene | FAT4 | C1832390 | Van Maldergem Wetzburger Verloes syndrome | 1 | CTD_human;ORPHANET |
Tgene | FAT4 | C1842563 | Heterotopia, Periventricular, Autosomal Recessive | 1 | CTD_human |
Tgene | FAT4 | C4014939 | HENNEKAM LYMPHANGIECTASIA-LYMPHEDEMA SYNDROME 2 | 1 | UNIPROT |