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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 40297

FusionGeneSummary for UBA1_FAT4

check button Fusion gene summary
Fusion gene informationFusion gene name: UBA1_FAT4
Fusion gene ID: 40297
HgeneTgene
Gene symbol

UBA1

FAT4

Gene ID

7317

79633

Gene nameubiquitin like modifier activating enzyme 1FAT atypical cadherin 4
SynonymsA1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1XCDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2
Cytomap

Xp11.3

4q28.1

Type of geneprotein-codingprotein-coding
Descriptionubiquitin-like modifier-activating enzyme 1A1S9T and BN75 temperature sensitivity complementingPOC20 centriolar protein homologUBA1, ubiquitin-activating enzyme E1 homolog Atesticular secretory protein Li 63protocadherin Fat 4FAT tumor suppressor homolog 4cadherin family member 14cadherin-related family member 11fat-like cadherin protein FAT-Jputative protein product of Nbla00548
Modification date2018052320180520
UniProtAcc

P22314

Q6V0I7

Ensembl transtripts involved in fusion geneENST00000377351, ENST00000335972, 
ENST00000490869, ENST00000377269, 
ENST00000394329, ENST00000335110, 
Fusion gene scores* DoF score7 X 8 X 2=1121 X 1 X 1=1
# samples 81
** MAII scorelog2(8/112*10)=-0.485426827170242
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: UBA1 [Title/Abstract] AND FAT4 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneUBA1

GO:0006974

cellular response to DNA damage stimulus

22456334


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BX281972UBA1chrX

47064653

+FAT4chr4

126412752

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000377351ENST00000394329UBA1chrX

47064653

+FAT4chr4

126412752

+
intron-3CDSENST00000377351ENST00000335110UBA1chrX

47064653

+FAT4chr4

126412752

+
intron-3CDSENST00000335972ENST00000394329UBA1chrX

47064653

+FAT4chr4

126412752

+
intron-3CDSENST00000335972ENST00000335110UBA1chrX

47064653

+FAT4chr4

126412752

+
intron-3CDSENST00000490869ENST00000394329UBA1chrX

47064653

+FAT4chr4

126412752

+
intron-3CDSENST00000490869ENST00000335110UBA1chrX

47064653

+FAT4chr4

126412752

+
intron-3CDSENST00000377269ENST00000394329UBA1chrX

47064653

+FAT4chr4

126412752

+
intron-3CDSENST00000377269ENST00000335110UBA1chrX

47064653

+FAT4chr4

126412752

+

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FusionProtFeatures for UBA1_FAT4


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
UBA1

P22314

FAT4

Q6V0I7

Catalyzes the first step in ubiquitin conjugation tomark cellular proteins for degradation through the ubiquitin-proteasome system (PubMed:1606621, PubMed:1447181). Activatesubiquitin by first adenylating its C-terminal glycine residue withATP, and thereafter linking this residue to the side chain of acysteine residue in E1, yielding a ubiquitin-E1 thioester and freeAMP (PubMed:1447181). Essential for the formation of radiation-induced foci, timely DNA repair and for response to replicationstress. Promotes the recruitment of TP53BP1 and BRCA1 at DNAdamage sites (PubMed:22456334). {ECO:0000269|PubMed:1447181,ECO:0000269|PubMed:1606621, ECO:0000269|PubMed:22456334}. Cadherins are calcium-dependent cell adhesion proteins.FAT4 plays a role in the maintenance of planar cell polarity aswell as in inhibition of YAP1-mediated neuroprogenitor cellproliferation and differentiation (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for UBA1_FAT4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for UBA1_FAT4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for UBA1_FAT4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for UBA1_FAT4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneUBA1C1844934Arthrogryposis multiplex congenita, distal, X-linked2CTD_human;ORPHANET;UNIPROT
HgeneUBA1C0007137Squamous cell carcinoma1CTD_human
TgeneFAT4C3809875VAN MALDERGEM SYNDROME 22UNIPROT
TgeneFAT4C0001418Adenocarcinoma1CTD_human
TgeneFAT4C0025202melanoma1CTD_human
TgeneFAT4C0038356Stomach Neoplasms1CTD_human
TgeneFAT4C0279626Squamous cell carcinoma of esophagus1CTD_human
TgeneFAT4C1691228Cystic Kidney Diseases1CTD_human
TgeneFAT4C1832390Van Maldergem Wetzburger Verloes syndrome1CTD_human;ORPHANET
TgeneFAT4C1842563Heterotopia, Periventricular, Autosomal Recessive1CTD_human
TgeneFAT4C4014939HENNEKAM LYMPHANGIECTASIA-LYMPHEDEMA SYNDROME 21UNIPROT