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Fusion gene ID: 40284 |
FusionGeneSummary for UACA_LTK |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: UACA_LTK | Fusion gene ID: 40284 | Hgene | Tgene | Gene symbol | UACA | LTK | Gene ID | 55075 | 4058 |
| Gene name | uveal autoantigen with coiled-coil domains and ankyrin repeats | leukocyte receptor tyrosine kinase | |
| Synonyms | NUCLING | TYK1 | |
| Cytomap | 15q23 | 15q15.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | uveal autoantigen with coiled-coil domains and ankyrin repeatsnuclear membrane binding protein | leukocyte tyrosine kinase receptorprotein tyrosine kinase 1 | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q9BZF9 | P29376 | |
| Ensembl transtripts involved in fusion gene | ENST00000322954, ENST00000539319, ENST00000379983, ENST00000560441, ENST00000559183, | ENST00000355166, ENST00000263800, ENST00000561619, ENST00000453182, | |
| Fusion gene scores | * DoF score | 6 X 4 X 6=144 | 1 X 1 X 1=1 |
| # samples | 6 | 1 | |
| ** MAII score | log2(6/144*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: UACA [Title/Abstract] AND LTK [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | LTK | GO:0006468 | protein phosphorylation | 9223670 |
| Tgene | LTK | GO:0008283 | cell proliferation | 10445845 |
| Tgene | LTK | GO:0010666 | positive regulation of cardiac muscle cell apoptotic process | 10445845 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | THCA | TCGA-FY-A3R6-01A | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000322954 | ENST00000355166 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000322954 | ENST00000263800 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000322954 | ENST00000561619 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000322954 | ENST00000453182 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000539319 | ENST00000355166 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000539319 | ENST00000263800 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000539319 | ENST00000561619 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000539319 | ENST00000453182 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000379983 | ENST00000355166 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000379983 | ENST00000263800 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000379983 | ENST00000561619 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000379983 | ENST00000453182 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000560441 | ENST00000355166 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000560441 | ENST00000263800 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000560441 | ENST00000561619 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| Frame-shift | ENST00000560441 | ENST00000453182 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| intron-3CDS | ENST00000559183 | ENST00000355166 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| intron-3CDS | ENST00000559183 | ENST00000263800 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| intron-3CDS | ENST00000559183 | ENST00000561619 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
| intron-3CDS | ENST00000559183 | ENST00000453182 | UACA | chr15 | 70957001 | - | LTK | chr15 | 41799372 | - |
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FusionProtFeatures for UACA_LTK |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| UACA | LTK |
| Regulates APAF1 expression and plays an important rolein the regulation of stress-induced apoptosis. Promotes apoptosisby regulating three pathways, apoptosome up-regulation,LGALS3/galectin-3 down-regulation and NF-kappa-B inactivation.Regulates the redistribution of APAF1 into the nucleus afterproapoptotic stress. Down-regulates the expression of LGALS3 byinhibiting NFKB1 (By similarity). {ECO:0000250}. Modulates isoactin dynamics to regulate themorphological alterations required for cell growth and motility.Interaction with ARF6 may modulate cell shape and motility afterinjury. May be involved in multiple neurite formation (Bysimilarity). {ECO:0000250|UniProtKB:Q8CGB3,ECO:0000250|UniProtKB:Q8HYY4}. | Receptor with a tyrosine-protein kinase activity. Theexact function of this protein is not known. Studies with chimericproteins (replacing its extracellular region with that of severalknown growth factor receptors, such as EGFR and CSFIR) demonstrateits ability to promote growth and specifically neurite outgrowth,and cell survival. Signaling appears to involve the PI3 kinasepathway. Involved in regulation of the secretory pathway involvingendoplasmic reticulum (ER) export sites (ERESs) and ER to Golgitransport. {ECO:0000269|PubMed:20548102}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for UACA_LTK |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for UACA_LTK |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| UACA | MED14, NRD1, FBXO25, STAMBP, RABEP1, USP48, TP63, PAN2, HIF1AN, FUS, KRT40, RNF2, TIGD7, C17orf59, PICK1, IFI16, HIF1A, MYH9, PPP1CB, SORT1, SYNCRIP, ANLN, L1TD1, WIZ, BAG6, WWP2, CDH1, RGS3, VTN, JPH4, CORO6, PNMA5, GUCY1B3, SYNC, MIS18A, CCDC102B | LTK | RAF1, PLCG1, PIK3R1, CBL, PTPN1, TNK2, ERRFI1, MUS81, EGFR, GRB2, SHC1, DUSP6, MTMR14 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for UACA_LTK |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for UACA_LTK |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | LTK | C0032460 | Polycystic Ovary Syndrome | 1 | CTD_human |
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