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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 40278

FusionGeneSummary for U2SURP_PLSCR1

check button Fusion gene summary
Fusion gene informationFusion gene name: U2SURP_PLSCR1
Fusion gene ID: 40278
HgeneTgene
Gene symbol

U2SURP

PLSCR1

Gene ID

23350

5359

Gene nameU2 snRNP associated SURP domain containingphospholipid scramblase 1
SynonymsSR140|fSAPaMMTRA1B
Cytomap

3q23

3q24

Type of geneprotein-codingprotein-coding
DescriptionU2 snRNP-associated SURP motif-containing protein140 kDa Ser/Arg-rich domain proteinSer/Arg-rich domain protein, 140 kDaU2-associated SR140 proteinU2-associated protein SR140functional spliceosome-associated protein aphospholipid scramblase 1PL scramblase 1ca(2+)-dependent phospholipid scramblase 1erythrocyte phospholipid scramblase
Modification date2018051920180523
UniProtAcc

O15042

O15162

Ensembl transtripts involved in fusion geneENST00000397933, ENST00000473835, 
ENST00000493598, 
ENST00000342435, 
ENST00000448205, ENST00000487389, 
ENST00000448787, ENST00000484560, 
Fusion gene scores* DoF score4 X 5 X 2=405 X 5 X 1=25
# samples 55
** MAII scorelog2(5/40*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(5/25*10)=1
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: U2SURP [Title/Abstract] AND PLSCR1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePLSCR1

GO:0006915

apoptotic process

10770950

TgenePLSCR1

GO:0017121

phospholipid scrambling

9218461|10770950|18629440

TgenePLSCR1

GO:0045944

positive regulation of transcription by RNA polymerase II

16091359

TgenePLSCR1

GO:2000373

positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity

17567603


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BF668126U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000397933ENST00000342435U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5UTR-5UTRENST00000397933ENST00000448205U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5UTR-5UTRENST00000397933ENST00000487389U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5UTR-5UTRENST00000397933ENST00000448787U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5UTR-intronENST00000397933ENST00000484560U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
Frame-shiftENST00000473835ENST00000342435U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5CDS-5UTRENST00000473835ENST00000448205U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5CDS-5UTRENST00000473835ENST00000487389U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5CDS-5UTRENST00000473835ENST00000448787U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5CDS-intronENST00000473835ENST00000484560U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
Frame-shiftENST00000493598ENST00000342435U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5CDS-5UTRENST00000493598ENST00000448205U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5CDS-5UTRENST00000493598ENST00000487389U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5CDS-5UTRENST00000493598ENST00000448787U2SURPchr3

142720515

+PLSCR1chr3

146251339

-
5CDS-intronENST00000493598ENST00000484560U2SURPchr3

142720515

+PLSCR1chr3

146251339

-

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FusionProtFeatures for U2SURP_PLSCR1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
U2SURP

O15042

PLSCR1

O15162

May mediate accelerated ATP-independent bidirectionaltransbilayer migration of phospholipids upon binding calcium ionsthat results in a loss of phospholipid asymmetry in the plasmamembrane. May play a central role in the initiation of fibrin clotformation, in the activation of mast cells and in the recognitionof apoptotic and injured cells by the reticuloendothelial system. May play a role in the antiviral response of interferon(IFN) by amplifying and enhancing the IFN response throughincreased expression of select subset of potent antiviral genes.May contribute to cytokine-regulated cell proliferation anddifferentiation.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for U2SURP_PLSCR1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for U2SURP_PLSCR1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
U2SURPSF3A2, MYC, TBC1D4, SIRT7, CUL3, CUL1, COPS5, CAND1, GRK5, MFAP1, ESR1, BARD1, MDC1, PAXIP1, PRPF40A, RBM17, RBM10, RBM5, CTNNBL1, DDX42, TRA2A, LMNA, TERT, TARDBP, RPA3, RPA2, RPA1, WWOX, DROSHA, CUL7, OBSL1, RPS2, RPSA, RPS8, WDFY2, ZRSR2, NTRK1, CHERP, SF3A1, HIST1H3E, MYO1C, SNW1, CDC5L, PLOD1, SNRPE, FGFR2, CSTF2T, U2AF2, JMJD6, HIST1H1T, NCL, CYLD, CD2BP2PLSCR1CPSF6, ANXA11, RASD1, CRY1, SLC25A6, PGLS, DTX2, HOXA1, DLK2, SPG7, LASP1, NTN4, YIPF3, LINC00663, PHLDA1, SF1, CCDC33, C10orf54, EFEMP2, NOC4L, GNAI2, KIAA1683, ENKD1, ATG12, NEU4, HOXB6, OGDH, MED15, IP6K2, FBXL18, NECAP2, C10orf10, FAM103A1, PLSCR4, CPSF3L, CRK, PCED1A, KRTAP4-12, GPRIN2, SPRY2, VASP, CDC42EP1, ZNF581, HOXA9, HEY2, PLSCR3, TFG, ADAMTSL4, ILF3, NPDC1, CCER1, ZNF764, EWSR1, EXD3, CNTFR, SMCP, GLRX3, DHRS1, DAZAP2, ZNF638, SLC35A2, ZBTB16, CTBP1-AS2, C10orf62, SRC, SHC1, SLPI, EGFR, MAPK6, CRKL, ATN1, RERE, APP, FRAT1, EP300, FBLN1, RBL1, ADCY7, HRG, PML, NR0B2, MVP, ARNT2, ESR2, KIF1A, PITX1, CTSZ, DOCK2, P2RY6, PKD2, RGS3, SMARCC1, STK16, CHRD, FRS3, DEF6, PRR13, VPS37C, DMRT3, SCNM1, GDPD5, KRTAP9-2, LINC01547, ZNF587, KRTAP4-2, LONRF1, CATSPER1, SPATA8, MGAT5B, ZNF417, LCE4A, BCL6B, TRIM42, LCE2D, LCE3C, KRTAP10-9, KRTAP10-11, KRTAP10-3, KRTAP5-6, KRTAP4-11, LGALS9C, GDE1, FAM134C, CDH1, DDIAS, REEP1, RTN1, CLCC1, BOLA1, REEP5, C12orf49, TMEM128, FAM8A1, FAM107A


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for U2SURP_PLSCR1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for U2SURP_PLSCR1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneU2SURPC0023893Liver Cirrhosis, Experimental1CTD_human
TgenePLSCR1C0021400Influenza1CTD_human
TgenePLSCR1C0023893Liver Cirrhosis, Experimental1CTD_human