![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 40278 |
FusionGeneSummary for U2SURP_PLSCR1 |
![]() |
Fusion gene information | Fusion gene name: U2SURP_PLSCR1 | Fusion gene ID: 40278 | Hgene | Tgene | Gene symbol | U2SURP | PLSCR1 | Gene ID | 23350 | 5359 |
Gene name | U2 snRNP associated SURP domain containing | phospholipid scramblase 1 | |
Synonyms | SR140|fSAPa | MMTRA1B | |
Cytomap | 3q23 | 3q24 | |
Type of gene | protein-coding | protein-coding | |
Description | U2 snRNP-associated SURP motif-containing protein140 kDa Ser/Arg-rich domain proteinSer/Arg-rich domain protein, 140 kDaU2-associated SR140 proteinU2-associated protein SR140functional spliceosome-associated protein a | phospholipid scramblase 1PL scramblase 1ca(2+)-dependent phospholipid scramblase 1erythrocyte phospholipid scramblase | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | O15042 | O15162 | |
Ensembl transtripts involved in fusion gene | ENST00000397933, ENST00000473835, ENST00000493598, | ENST00000342435, ENST00000448205, ENST00000487389, ENST00000448787, ENST00000484560, | |
Fusion gene scores | * DoF score | 4 X 5 X 2=40 | 5 X 5 X 1=25 |
# samples | 5 | 5 | |
** MAII score | log2(5/40*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/25*10)=1 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: U2SURP [Title/Abstract] AND PLSCR1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PLSCR1 | GO:0006915 | apoptotic process | 10770950 |
Tgene | PLSCR1 | GO:0017121 | phospholipid scrambling | 9218461|10770950|18629440 |
Tgene | PLSCR1 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 16091359 |
Tgene | PLSCR1 | GO:2000373 | positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity | 17567603 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF668126 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000397933 | ENST00000342435 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5UTR-5UTR | ENST00000397933 | ENST00000448205 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5UTR-5UTR | ENST00000397933 | ENST00000487389 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5UTR-5UTR | ENST00000397933 | ENST00000448787 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5UTR-intron | ENST00000397933 | ENST00000484560 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
Frame-shift | ENST00000473835 | ENST00000342435 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5CDS-5UTR | ENST00000473835 | ENST00000448205 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5CDS-5UTR | ENST00000473835 | ENST00000487389 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5CDS-5UTR | ENST00000473835 | ENST00000448787 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5CDS-intron | ENST00000473835 | ENST00000484560 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
Frame-shift | ENST00000493598 | ENST00000342435 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5CDS-5UTR | ENST00000493598 | ENST00000448205 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5CDS-5UTR | ENST00000493598 | ENST00000487389 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5CDS-5UTR | ENST00000493598 | ENST00000448787 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
5CDS-intron | ENST00000493598 | ENST00000484560 | U2SURP | chr3 | 142720515 | + | PLSCR1 | chr3 | 146251339 | - |
Top |
FusionProtFeatures for U2SURP_PLSCR1 |
![]() |
Hgene | Tgene |
U2SURP | PLSCR1 |
May mediate accelerated ATP-independent bidirectionaltransbilayer migration of phospholipids upon binding calcium ionsthat results in a loss of phospholipid asymmetry in the plasmamembrane. May play a central role in the initiation of fibrin clotformation, in the activation of mast cells and in the recognitionof apoptotic and injured cells by the reticuloendothelial system. May play a role in the antiviral response of interferon(IFN) by amplifying and enhancing the IFN response throughincreased expression of select subset of potent antiviral genes.May contribute to cytokine-regulated cell proliferation anddifferentiation. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for U2SURP_PLSCR1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for U2SURP_PLSCR1 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
U2SURP | SF3A2, MYC, TBC1D4, SIRT7, CUL3, CUL1, COPS5, CAND1, GRK5, MFAP1, ESR1, BARD1, MDC1, PAXIP1, PRPF40A, RBM17, RBM10, RBM5, CTNNBL1, DDX42, TRA2A, LMNA, TERT, TARDBP, RPA3, RPA2, RPA1, WWOX, DROSHA, CUL7, OBSL1, RPS2, RPSA, RPS8, WDFY2, ZRSR2, NTRK1, CHERP, SF3A1, HIST1H3E, MYO1C, SNW1, CDC5L, PLOD1, SNRPE, FGFR2, CSTF2T, U2AF2, JMJD6, HIST1H1T, NCL, CYLD, CD2BP2 | PLSCR1 | CPSF6, ANXA11, RASD1, CRY1, SLC25A6, PGLS, DTX2, HOXA1, DLK2, SPG7, LASP1, NTN4, YIPF3, LINC00663, PHLDA1, SF1, CCDC33, C10orf54, EFEMP2, NOC4L, GNAI2, KIAA1683, ENKD1, ATG12, NEU4, HOXB6, OGDH, MED15, IP6K2, FBXL18, NECAP2, C10orf10, FAM103A1, PLSCR4, CPSF3L, CRK, PCED1A, KRTAP4-12, GPRIN2, SPRY2, VASP, CDC42EP1, ZNF581, HOXA9, HEY2, PLSCR3, TFG, ADAMTSL4, ILF3, NPDC1, CCER1, ZNF764, EWSR1, EXD3, CNTFR, SMCP, GLRX3, DHRS1, DAZAP2, ZNF638, SLC35A2, ZBTB16, CTBP1-AS2, C10orf62, SRC, SHC1, SLPI, EGFR, MAPK6, CRKL, ATN1, RERE, APP, FRAT1, EP300, FBLN1, RBL1, ADCY7, HRG, PML, NR0B2, MVP, ARNT2, ESR2, KIF1A, PITX1, CTSZ, DOCK2, P2RY6, PKD2, RGS3, SMARCC1, STK16, CHRD, FRS3, DEF6, PRR13, VPS37C, DMRT3, SCNM1, GDPD5, KRTAP9-2, LINC01547, ZNF587, KRTAP4-2, LONRF1, CATSPER1, SPATA8, MGAT5B, ZNF417, LCE4A, BCL6B, TRIM42, LCE2D, LCE3C, KRTAP10-9, KRTAP10-11, KRTAP10-3, KRTAP5-6, KRTAP4-11, LGALS9C, GDE1, FAM134C, CDH1, DDIAS, REEP1, RTN1, CLCC1, BOLA1, REEP5, C12orf49, TMEM128, FAM8A1, FAM107A |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for U2SURP_PLSCR1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for U2SURP_PLSCR1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | U2SURP | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | PLSCR1 | C0021400 | Influenza | 1 | CTD_human |
Tgene | PLSCR1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |