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Fusion gene ID: 40211 |
FusionGeneSummary for TXNL1_LRP1B |
Fusion gene summary |
Fusion gene information | Fusion gene name: TXNL1_LRP1B | Fusion gene ID: 40211 | Hgene | Tgene | Gene symbol | TXNL1 | LRP1B | Gene ID | 9352 | 53353 |
Gene name | thioredoxin like 1 | LDL receptor related protein 1B | |
Synonyms | HEL-S-114|TRP32|TXL-1|TXNL|Txl | LRP-1B|LRP-DIT|LRPDIT | |
Cytomap | 18q21.31 | 2q22.1-q22.2 | |
Type of gene | protein-coding | protein-coding | |
Description | thioredoxin-like protein 132 kDa thioredoxin-related proteinepididymis secretory protein Li 114thioredoxin-related 32 kDa proteinthioredoxin-related protein 1 | low-density lipoprotein receptor-related protein 1BLRP-deleted in tumorslow density lipoprotein receptor related protein-deleted in tumorlow density lipoprotein receptor-related protein 1Blow density lipoprotein-related protein 1B (deleted in tumors) | |
Modification date | 20180522 | 20180519 | |
UniProtAcc | O43396 | Q9NZR2 | |
Ensembl transtripts involved in fusion gene | ENST00000217515, ENST00000585497, ENST00000590954, ENST00000540155, | ENST00000389484, ENST00000486364, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 5 X 5 X 4=100 |
# samples | 2 | 5 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(5/100*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TXNL1 [Title/Abstract] AND LRP1B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-G2-A2EF-01A | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000217515 | ENST00000389484 | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
5CDS-intron | ENST00000217515 | ENST00000486364 | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
intron-3CDS | ENST00000585497 | ENST00000389484 | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
intron-intron | ENST00000585497 | ENST00000486364 | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
Frame-shift | ENST00000590954 | ENST00000389484 | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
5CDS-intron | ENST00000590954 | ENST00000486364 | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
5UTR-3CDS | ENST00000540155 | ENST00000389484 | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
5UTR-intron | ENST00000540155 | ENST00000486364 | TXNL1 | chr18 | 54305574 | - | LRP1B | chr2 | 141299540 | - |
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FusionProtFeatures for TXNL1_LRP1B |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
TXNL1 | LRP1B |
Active thioredoxin with a redox potential of about -250mV. {ECO:0000269|PubMed:19349277}. | Potential cell surface proteins that bind andinternalize ligands in the process of receptor-mediatedendocytosis. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2464_2504 | 2398 | 4600 | Domain | EGF-like 10 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2509_2548 | 2398 | 4600 | Domain | LDL-receptor class A 11 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2551_2587 | 2398 | 4600 | Domain | LDL-receptor class A 12 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2590_2626 | 2398 | 4600 | Domain | LDL-receptor class A 13 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2629_2675 | 2398 | 4600 | Domain | LDL-receptor class A 14 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2681_2717 | 2398 | 4600 | Domain | LDL-receptor class A 15 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2719_2757 | 2398 | 4600 | Domain | LDL-receptor class A 16 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2760_2800 | 2398 | 4600 | Domain | LDL-receptor class A 17 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2804_2841 | 2398 | 4600 | Domain | LDL-receptor class A 18 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2844_2885 | 2398 | 4600 | Domain | LDL-receptor class A 19 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2890_2926 | 2398 | 4600 | Domain | LDL-receptor class A 20 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2927_2967 | 2398 | 4600 | Domain | EGF-like 11 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2968_3008 | 2398 | 4600 | Domain | EGF-like 12%3B calcium-binding |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3273_3314 | 2398 | 4600 | Domain | EGF-like 13 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3316_3353 | 2398 | 4600 | Domain | LDL-receptor class A 21 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3356_3392 | 2398 | 4600 | Domain | LDL-receptor class A 22 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3395_3432 | 2398 | 4600 | Domain | LDL-receptor class A 23 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3435_3472 | 2398 | 4600 | Domain | LDL-receptor class A 24 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3475_3511 | 2398 | 4600 | Domain | LDL-receptor class A 25 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3514_3550 | 2398 | 4600 | Domain | LDL-receptor class A 26 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3552_3588 | 2398 | 4600 | Domain | LDL-receptor class A 27 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3593_3629 | 2398 | 4600 | Domain | LDL-receptor class A 28 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3631_3668 | 2398 | 4600 | Domain | LDL-receptor class A 29 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3673_3711 | 2398 | 4600 | Domain | LDL-receptor class A 30 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3714_3752 | 2398 | 4600 | Domain | LDL-receptor class A 31 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3761_3797 | 2398 | 4600 | Domain | LDL-receptor class A 32 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3801_3843 | 2398 | 4600 | Domain | EGF-like 14 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3844_3881 | 2398 | 4600 | Domain | EGF-like 15 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4171_4208 | 2398 | 4600 | Domain | EGF-like 16 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4213_4249 | 2398 | 4600 | Domain | EGF-like 17 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4249_4285 | 2398 | 4600 | Domain | EGF-like 18 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4285_4321 | 2398 | 4600 | Domain | EGF-like 19 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4321_4357 | 2398 | 4600 | Domain | EGF-like 20 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4357_4392 | 2398 | 4600 | Domain | EGF-like 21 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4390_4427 | 2398 | 4600 | Domain | EGF-like 22 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4492_4495 | 2398 | 4600 | Motif | Endocytosis signal |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4559_4562 | 2398 | 4600 | Motif | Endocytosis signal |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2417_2459 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 25 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3055_3098 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 26 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3099_3141 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 27 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3142_3185 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 28 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3186_3224 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 29 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3225_3268 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 30 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3933_3980 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 31 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 3981_4038 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 32 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4039_4082 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 33 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4083_4127 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 34 |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4468_4599 | 2398 | 4600 | Topological domain | Cytoplasmic |
Tgene | >LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 4445_4467 | 2398 | 4600 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >TXNL1 | chr18:54305574 | chr2:141299540 | ENST00000217515 | - | 1 | 8 | 115_285 | 32 | 290 | Domain | PITH |
Hgene | >TXNL1 | chr18:54305574 | chr2:141299540 | ENST00000217515 | - | 1 | 8 | 2_109 | 32 | 290 | Domain | Note=Thioredoxin |
Hgene | >TXNL1 | chr18:54305574 | chr2:141299540 | ENST00000590954 | - | 3 | 10 | 115_285 | 32 | 290 | Domain | PITH |
Hgene | >TXNL1 | chr18:54305574 | chr2:141299540 | ENST00000590954 | - | 3 | 10 | 2_109 | 32 | 290 | Domain | Note=Thioredoxin |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1005_1043 | 2398 | 4600 | Domain | LDL-receptor class A 7 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1052_1089 | 2398 | 4600 | Domain | LDL-receptor class A 8 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1094_1132 | 2398 | 4600 | Domain | LDL-receptor class A 9 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1135_1174 | 2398 | 4600 | Domain | LDL-receptor class A 10 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 116_154 | 2398 | 4600 | Domain | EGF-like 1 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1174_1213 | 2398 | 4600 | Domain | EGF-like 5 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1214_1253 | 2398 | 4600 | Domain | EGF-like 6 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1527_1570 | 2398 | 4600 | Domain | EGF-like 7 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 155_194 | 2398 | 4600 | Domain | EGF-like 2%3B calcium-binding |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1834_1875 | 2398 | 4600 | Domain | EGF-like 8 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2143_2183 | 2398 | 4600 | Domain | EGF-like 9 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 31_70 | 2398 | 4600 | Domain | LDL-receptor class A 1 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 471_517 | 2398 | 4600 | Domain | EGF-like 3 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 76_114 | 2398 | 4600 | Domain | LDL-receptor class A 2 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 794_834 | 2398 | 4600 | Domain | EGF-like 4 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 844_882 | 2398 | 4600 | Domain | LDL-receptor class A 3 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 885_923 | 2398 | 4600 | Domain | LDL-receptor class A 4 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 926_963 | 2398 | 4600 | Domain | LDL-receptor class A 5 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 966_1003 | 2398 | 4600 | Domain | LDL-receptor class A 6 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1300_1346 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 8 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1347_1389 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 9 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1390_1436 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 10 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1437_1480 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 11 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1481_1522 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 12 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1618_1660 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 13 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1661_1704 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 14 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1705_1744 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 15 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1745_1787 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 16 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1922_1964 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 17 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 1965_2007 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 28 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2008_2051 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 19 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2052_2095 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 20 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2239_2280 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 21 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2281_2329 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 22 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2330_2374 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 23 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 2375_2416 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 24 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 295_337 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 1 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 338_381 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 2 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 382_425 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 3 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 568_610 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 4 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 611_656 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 5 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 657_706 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 6 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 707_750 | 2398 | 4600 | Repeat | Note=LDL-receptor class B 7 |
Tgene | LRP1B | chr18:54305574 | chr2:141299540 | ENST00000389484 | - | 42 | 91 | 25_4444 | 2398 | 4600 | Topological domain | Extracellular |
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FusionGeneSequence for TXNL1_LRP1B |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_TXNL1_ENST00000217515_chr18_54305574_-_LRP1B_ENST00000389484_chr2_141299540_-_2234aa MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGXXLNLGQGLSSVWLFMTIIYSGRTGEEELYCGPTSTQEEIQKFFVPIFHISQWESXL LPMTPIAVNFLHVHYXMEAAMTCAFXLPMGEXIVPAEGTEYCXRTTDVXLKIPPATLIRSLNVEMVSALTTSSPVMAFLTVKINQMKNCS TVKTEAVEEASSHAIIAAAFLMASYVMEKMTAETTLMNXIVKFQPVPRLSSAVQMGLVFQDQHDATRTXIVQMLQMKRTAITQTAHISIS LEXKPQGSXDVILPHCVFCQPGYATGLMTVETIQMNXSAQFKTNTNVKKIILVVLVEDAFXIPGYAMVRKIVRMDVMNSTVILLALGTNL LVPHKNVFLSIGFVMEKMTVGMGXMKVTAFVVPXPVLLTCSAARALVPACPDIGFVMVKGTVQMEAMSFPQQAALPIIHVMKMLSCAIIK YAFPSNLFVTMMTTVEMALMSHRSVDIDSVVQKNLVVLMGGVFXILNGSVMETLTVLTILMKHLXTQSVKVQNSHATVHFLCAKMAGAFP VEVFATIRMTVAMVQMRETAIXMNVXVRKSVDVLKTVKTFRSVISANAGLDSNXRMTAKHVXTLMNALQAFPVASNASIHTGLTSASVQM GMKYNLITQMAANRSQMKNLFXFLLIIMRXGKLALMAPTTHFXNRDXTMLLLXTLITEKNSSIGSILADPMAVAXIECVXMEVTLRXFIT QRSPMHLLSIGLEKTSIGLTQKKESLKYPNSMACTLLYSLAKGXSFPETCLXILKLDICIGLTAASILILAVLEWMEPIRVLSXKPRFLD LWHXQXIMLIVDSTGPMKITLNLATWMDLIDTKSLIKIFQGXLHXHCLKTTSTGLMGKPSHSAVPIKHREQTDSHXFTHGMPSQISRCII LIDNLMSPNISAXXIMVVAVICAFXPLEKPTLVHVPLTSIWQLIIGLAYPTAQPASFVAKLTNVFHSGGNVTPWMTVVMDLMNLMTVLNL DVSQADFSVGLDSVLYQLSSVMERMIVETILMNSTVTHMSACQVNSNVPRTRNVSQXTXDVMGKMTVVMRKMKETVLKTAVLQTISSVRL RSIAFPSCGFVTRIQTVQMHQTRPTAIKRLVDLMNSSVKTTTVFPITGGVIAKMTAVIIQMKKTVSHRHVHXKISSVPMGTVFLQGFGVM EILTVQMALMREIVRQVVPKISSGVPMVSVYQQNGNVMAMKTANMGKMRKAVSQLLLLAHHVNIYVPVMDVFQHLXNVMENMIVLMVQMR WTVXLNVRKISFGAKIKPTVFQLDGCVMEFMTVWMAVMKRTVKEEEIYVELMSSFAIILSANYISGCVMERTTVETTLMKPLICVSNFFV HPRDLTDAEITEYAYSRSKCAMGLMNAVTIQMKITVVVSXHIKQGLVKRMSLLVVIKNASLWISSVIDLMTAEMVQMSKDAEXLLLNIPV KIMXIHVEMMHIVIKXKHLFSVAVSLDFRETXKTDNVKTLMNVWCLAHVPINVXMWKDHINVCVTRIFKKEITPAXQKALKIKFSTLLMT LISWVLYIHSTTVAIINKFLILNIIQEXQGWMYIIKEIXLFGVLSLIQAEFSTKGSMAEKKGKQTVAXFVLNLKGPGTLQLTGWLETFTG LIILECIGSVTTLLTGPVXGTLSTXGSXMAPTAPDSXQIWLENPMLLQXILKEGXCTGLLLGIIPIXKKQPWMVHXEGFXYKRTYRDPQV WLWIILVNAYIGLTLSSPSLAVFCMMALIQXSLSAANKVYYIHIGSISLKIIYMEQDLKMVYFEFKNLAMVQXSTXLXILIKQKVFXYLI VINNXIYPIHAWIXHANFFACXILLGPLVCVQKENIXLMAPAMMTACXMIHVSXLVKMEEDAFXMRKVIXGVTVGPVIQEKDVKSTTVAT TARMEELAYHQFXGDPPAAVHWVSLGQTVVRQSVRIFVKMEEPALXLLETSLTATASRNTPETDVSTTCATTIVXILNHVPLGMMEVLNV SVQRAMKDQNVRLTSVXGAMGGTALXIKTVKIYFATALMERLPLAVSYVMATVTMVAHASWTPRQMYLCVYAPPTGQAHSVKGQPQRAAS LIISAQEALPSLCLSSSWXLXXPPXXLVXCFVKEKEGQKQLEDNLLSMEEXMXKLAIHLITCMRXIMITTMEVFXILALXXTQQRPGTXG |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_TXNL1_ENST00000217515_chr18_54305574_-_LRP1B_ENST00000389484_chr2_141299540_-_6704nt ATGGTGGGGGTGAAGCCCGTCGGGAGCGACCCGGATTTCCAGCCAGAGCTGAGCGGCGCGGGCTCCAGACTCGCCGTGGTCAAGTTCACC ATGAGAGGGTGATAGTTAAATCTGGGCCAGGGACTTTCCTCAGTTTGGCTGTTTATGACAATTATATATTCTGGTCGGACTGGGGAAGAA GAGCTATACTGCGGTCCAACAAGTACACAGGAGGAGATACAAAAATTCTTCGTTCCGATATTCCACATCAGCCAATGGGAATCATAGCTG TTGCCAATGACACCAATAGCTGTGAACTTTCTCCATGTGCATTATTGAATGGAGGCTGCCATGACTTGTGCCTTTTAACTCCCAATGGGA GAGTGAATTGTTCCTGCAGAGGGGACCGAATATTGCTAGAGGACAACAGATGTGTGACTAAAAATTCCTCCTGCAACGCTTATTCGGAGT TTGAATGTGGAAATGGTGAGTGCATTGACTACCAGCTCACCTGTGATGGCATTCCTCACTGTAAAGATAAATCAGATGAAAAACTGCTCT ACTGTGAAAACAGAAGCTGTCGAAGAGGCTTCAAGCCATGCTATAATCGCCGCTGCATTCCTCATGGCAAGTTATGTGATGGAGAAAATG ACTGCGGAGACAACTCTGATGAATTAGATTGTAAAGTTTCAACCTGTGCCACGGTTGAGTTCCGCTGTGCAGATGGGACTTGTATTCCAA GATCAGCACGATGCAACCAGAACATAGATTGTGCAGATGCTTCAGATGAAAAGAACTGCAATAACACAGACTGCACACATTTCTATAAGC TTGGAGTGAAAACCACAGGGTTCATAAGATGTAATTCTACCTCACTGTGTGTTCTGCCAACCTGGATATGCGACGGGTCTAATGACTGTG GAGACTATTCAGATGAATTAAAGTGCCCAGTTCAAAACAAACACAAATGTGAAGAAAATTATTTTAGTTGTCCTAGTGGAAGATGCATTT TGAATACCTGGATATGCGATGGTCAGAAAGATTGTGAGGATGGACGTGATGAATTCCACTGTGATTCTTCTTGCTCTTGGAACCAATTTG CTTGTTCCGCACAAAAATGTATTTCTAAGCATTGGATTTGTGATGGAGAAGATGACTGTGGGGATGGGTTAGATGAAAGTGACAGCATTT GTGGTGCCATAACCTGTGCTGCTGACATGTTCAGCTGCCAGGGCTCTCGTGCCTGCGTGCCCCGACATTGGCTTTGTGATGGTGAAAGGG ACTGTCCAGATGGAAGCGATGAGCTTTCCACAGCAGGCTGCGCTCCCAATAATACATGTGATGAAAATGCTTTCATGTGCCATAATAAAG TATGCATTCCCAAGCAATTTGTTTGTGACCATGATGACGACTGTGGAGATGGCTCTGATGAGTCACCGCAGTGTGGATATCGACAGTGTG GTACAGAAGAATTTAGTTGTGCTGATGGGCGGTGTCTTCTAAATACTCAATGGCAGTGTGATGGAGACTTTGACTGTCCTGACCATTCTG ATGAAGCACCTTTAAACCCAAAGTGTAAAAGTGCAGAACAGTCATGCAACAGTTCATTTTTTATGTGCAAAAATGGCAGGTGCATTCCCA GTGGAGGTCTTTGCGACAATAAGGATGACTGTGGCGATGGTTCAGATGAGAGAAACTGCCATATAAATGAATGTTTGAGTAAGAAAGTCA GTGGATGTTCTCAAGACTGTCAAGACCTTCCGGTCAGTTATAAGTGCAAATGCTGGCCTGGATTCCAACTGAAGGATGACGGCAAAACAT GTGTAGACATTGATGAATGCTCTTCAGGCTTTCCCTGTAGCCAGCAATGCATCAATACATACGGGACTTACAAGTGCCTCTGTACAGATG GGTATGAAATACAACCTGATAACCCAAATGGCTGCAAATCGCTCTCAGATGAAGAACCTTTTTTAATTCTTGCTGATCATCATGAGATAA GGAAAATTAGCACTGATGGCTCCAACTACACACTTTTAAAACAGGGATTAAACAATGTTATTGCTATAGACTTTGATTACAGAGAAGAAT TCATCTATTGGATCGATTCTAGCCGACCCAATGGCAGTCGCATAAATAGAATGTGTTTAAATGGAAGTGACATTAAGGTAGTTCATAACA CAGCGGTCCCCAATGCACTTGCTGTCGATTGGATTGGAAAAAACCTCTATTGGTCTGACACAGAAAAAAGAATCATTGAAGTATCCAAAC TCAATGGCTTGTACCCTACTATACTCGTTAGCAAAAGGCTGAAGTTTCCCAGAGACTTGTCTTTAGATCCTCAAGCTGGATATTTGTATT GGATTGACTGCTGCGAGTATCCTCATATTGGCCGTGTTGGAATGGATGGAACCAATCAGAGTGTTGTCATAGAAACCAAGATTTCTAGAC CTATGGCACTAACAATAGATTATGTTAATCGTAGACTCTACTGGGCCGATGAAAATCACATTGAATTTAGCAACATGGATGGATCTCATA GACACAAAGTCCCTAATCAAGATATTCCAGGGGTGATTGCACTAACATTGTTTGAAGACTACATCTACTGGACTGATGGGAAAACCAAGT CACTCAGCCGTGCCCATAAAACATCGGGAGCAGACAGACTCTCACTGATTTACTCATGGCATGCCATCACAGATATCCAGGTGTATCATT CTTATAGACAACCTGATGTCTCCAAACATCTCTGCATGATAAATAATGGTGGTTGCAGTCATTTGTGCCTTTTAGCCCCTGGAAAAACCC ACACTTGTGCATGTCCCACTAACTTCTATCTGGCAGCTGATAATAGGACTTGCTTATCCAACTGCACAGCCAGCCAGTTTCGTTGCAAAA CTGACAAATGTATTCCATTCTGGTGGAAATGTGACACCGTGGATGACTGTGGTGATGGATCTGATGAACCTGATGACTGTCCTGAATTTA GATGTCAGCCAGGCCGATTTCAGTGTGGGACTGGACTCTGTGCTCTACCAGCTTTCATCTGTGATGGAGAGAATGATTGTGGAGACAATT CTGATGAACTCAACTGTGACACACATGTCTGCCTGTCAGGTCAATTCAAATGTACCAAGAACCAGAAATGTATCCCAGTAAACTTAAGAT GTAATGGGCAAGATGACTGTGGTGATGAGGAAGATGAAAGAGACTGTCCTGAAAACAGCTGTTCTCCAGACTATTTCCAGTGTAAGACTA CGAAGCATTGCATTTCCAAGCTGTGGGTTTGTGACGAGGATCCAGACTGTGCAGATGCATCAGACGAGGCCAACTGCGATAAAAAGACTT GTGGACCTCATGAATTCCAGTGTAAAAACAACAACTGTATTCCCGATCACTGGCGGTGTGATAGCCAAAATGACTGCAGTGATAATTCAG ATGAAGAAAACTGTAAGCCACAGACATGTACATTGAAAGATTTCCTCTGTGCCAATGGGGACTGTGTTTCTTCAAGGTTTTGGTGTGATG GAGATTTTGACTGTGCAGATGGCTCTGATGAGAGAAATTGTGAGACAAGTTGTTCCAAAGATCAGTTCCGGTGTTCCAATGGTCAGTGTA TACCAGCAAAATGGAAATGTGATGGCCATGAAGACTGCAAATATGGGGAAGATGAGAAAAGCTGTGAGCCAGCTTCTCCTACTTGCTCAT CACGTGAATATATATGTGCCAGTGATGGATGTATTTCAGCATCTTTGAAATGTAATGGAGAATATGATTGTGCTGATGGTTCAGATGAGA TGGACTGTGTGACTGAATGTAAGGAAGATCAGTTTCGGTGCAAAAATAAAGCCCACTGTATTCCAATTAGATGGCTGTGTGATGGAATTC ATGACTGTGTGGATGGCAGTGATGAAGAGAACTGTGAAAGAGGAGGAAATATATGTAGAGCTGATGAGTTCCTTTGCAATAATTCTCTCT GCAAACTACATTTCTGGGTGTGTGATGGAGAGGACGACTGTGGAGACAACTCTGATGAAGCCCCTGATATGTGTGTCAAATTTCTTTGTC CATCCACGAGACCTCACAGATGCAGAAATAACAGAATATGCCTACAGTCGGAGCAAATGTGCAATGGGATTGATGAATGCGGTGACAATT CAGATGAAGATCACTGTGGTGGTAAGCTGACATATAAAGCAAGGCCTTGTAAAAAGGATGAGTTTGCTTGTAGTAATAAAAAATGCATCC CTATGGATCTCCAGTGTGATCGACTTGATGACTGCGGAGATGGTTCAGATGAGCAAGGATGCAGAATAGCTCCTACTGAATATACCTGTG AAGATAATGTGAATCCATGTGGAGATGATGCATATTGTAATCAAATAAAAACATCTGTTTTCTGTCGCTGTAAGCCTGGATTTCAGAGAA ACATGAAAAACAGACAATGTGAAGACCTTAATGAATGTTTGGTGTTTGGCACATGTTCCCATCAATGTATAAATGTGGAAGGATCATATA AATGTGTGTGTGACCAGAATTTTCAAGAAAGAAATAACACCTGCATAGCAGAAGGCTCTGAAGATCAAGTTCTCTACATTGCTAATGACA CTGATATCCTGGGTTTTATATATCCATTCAACTACAGTGGCGATCATCAACAAATTTCTCATATTGAACATAATTCAAGAATAACAGGGA TGGATGTATATTATCAAAGAGATATGATTATTTGGAGTACTCAGTTTAATCCAGGCGGAATTTTCTACAAAAGGATCCATGGCAGAGAAA AAAGGCAAGCAAACAGTGGCTTGATTTGTCCTGAATTTAAAAGGCCCAGGGACATTGCAGTTGACTGGGTGGCTGGAAACATTTACTGGA CTGATCATTCTAGAATGCATTGGTTCAGTTACTACACTACTCACTGGACCAGTCTGAGGTACTCTATCAACGTAGGGCAGCTGAATGGCC CCAACTGCACCAGACTCTTAACAAATATGGCTGGAGAACCCTATGCTATTGCAGTAAATCCTAAAAGAGGGATGATGTACTGGACTGTTG TTGGGGATCATTCCCATATAGAAGAAGCAGCCATGGATGGTACACTGAGAAGGATTTTAGTACAAAAGAACTTACAGAGACCCACAGGTT TGGCTGTGGATTATTTTAGTGAACGCATATATTGGGCTGACTTTGAGCTCTCCATCATTGGCAGTGTTCTGTATGATGGCTCTAATTCAG TAGTCTCTGTCAGCAGCAAACAAGGTTTATTACATCCACATAGGATCGATATCTTTGAAGATTATATATATGGAGCAGGACCTAAAAATG GTGTATTTCGAGTTCAAAAATTTGGCCATGGTTCAGTAGAGTACTTAGCTTTAAATATTGATAAAACAAAAGGTGTTTTGATATCTCATC GTTATAAACAACTAGATTTACCCAATCCATGCTTGGATTTAGCATGCGAATTTCTTTGCTTGCTAAATCCTTCTGGGGCCACTTGTGTGT GTCCAGAAGGAAAATATTTGATTAATGGCACCTGCAATGATGACAGCCTGTTAGATGATTCATGTAAGTTAACTTGTGAAAATGGAGGAA GATGCATTTTAAATGAGAAAGGTGATTTGAGGTGTCACTGTTGGCCCAGTTATTCAGGAGAAAGATGTGAAGTCAACCACTGTAGCAACT ACTGCCAGAATGGAGGAACTTGCGTACCATCAGTTCTAGGGAGACCCACCTGCAGCTGTGCACTGGGTTTCACTGGGCCAAACTGTGGTA AGACAGTCTGTGAGGATTTTTGTCAAAATGGAGGAACCTGCATTGTGACTGCTGGAAACCAGCCTTACTGCCACTGCCAGCCGGAATACA CCGGAGACAGATGTCAGTACTACGTGTGCCACCACTATTGTGTGAATTCTGAATCATGTACCATTGGGGATGATGGAAGTGTTGAATGTG TCTGTCCAACGCGCTATGAAGGACCAAAATGTGAGGTTGACAAGTGTGTAAGGTGCCATGGGGGGCACTGCATTATAAATAAAGACAGTG AAGATATATTTTGCAACTGCACTAATGGAAAGATTGCCTCTAGCTGTCAGTTATGTGATGGCTACTGTTACAATGGTGGCACATGCCAGC TGGACCCCGAGACAAATGTACCTGTGTGTCTATGCTCCACCAACTGGTCAGGCACACAGTGTGAAAGGCCAGCCCCAAAGAGCAGCAAGT CTGATCATATCAGCACAAGAAGCATTGCCATCATTGTGCCTCTCGTCCTCTTGGTGACTTTGATAACCACCTTAGTAATTGGTTTAGTGC TTTGTAAAAGAAAAAGAAGGACAAAAACAATTAGAAGACAACCTATTATCAATGGAGGAATAAATGTAGAAATTGGCAATCCATCTTATA ACATGTATGAGGTAGATCATGATCACAACGATGGAGGTCTTTTAGATCCTGGCTTTATGATAGACCCAACAAAGGCCAGGTACATAGGGG GAGGACCCAGTGCTTTCAAGCTTCCACACACAGCGCCGCCCATCTACCTAAACTCTGATTTGAAAGGACCACTAACTGCTGGGCCAACAA ATTACTCCAATCCGGTATATGCAAAATTATATATGGATGGGCAAAACTGTCGAAACTCCTTAGGAAGTGTTGATGAAAGGAAAGAACTGC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_TXNL1_ENST00000217515_chr18_54305574_-_LRP1B_ENST00000389484_chr2_141299540_-_8672nt TCCCCCATCCCTCCCCGCCCCCTCGGCCGCTCCGCTCCCTGGCGTGACTCGGCACTGAGAGTCCCGGGAGAAGACTCGGCGGTCGCCACC TCTTCTGTCCAGGCCTCGGCCTTCCTGAGCATCTCTCCTTCCTCTCCCAGATCGTCTTCTCCTTCAGTTTCAAAGCCAGTGGCGTCGCGG CCACCCTGCCGGGCTCTCTGTGAGGATGGTGGGGGTGAAGCCCGTCGGGAGCGACCCGGATTTCCAGCCAGAGCTGAGCGGCGCGGGCTC CAGACTCGCCGTGGTCAAGTTCACCATGAGAGGGTGATAGTTAAATCTGGGCCAGGGACTTTCCTCAGTTTGGCTGTTTATGACAATTAT ATATTCTGGTCGGACTGGGGAAGAAGAGCTATACTGCGGTCCAACAAGTACACAGGAGGAGATACAAAAATTCTTCGTTCCGATATTCCA CATCAGCCAATGGGAATCATAGCTGTTGCCAATGACACCAATAGCTGTGAACTTTCTCCATGTGCATTATTGAATGGAGGCTGCCATGAC TTGTGCCTTTTAACTCCCAATGGGAGAGTGAATTGTTCCTGCAGAGGGGACCGAATATTGCTAGAGGACAACAGATGTGTGACTAAAAAT TCCTCCTGCAACGCTTATTCGGAGTTTGAATGTGGAAATGGTGAGTGCATTGACTACCAGCTCACCTGTGATGGCATTCCTCACTGTAAA GATAAATCAGATGAAAAACTGCTCTACTGTGAAAACAGAAGCTGTCGAAGAGGCTTCAAGCCATGCTATAATCGCCGCTGCATTCCTCAT GGCAAGTTATGTGATGGAGAAAATGACTGCGGAGACAACTCTGATGAATTAGATTGTAAAGTTTCAACCTGTGCCACGGTTGAGTTCCGC TGTGCAGATGGGACTTGTATTCCAAGATCAGCACGATGCAACCAGAACATAGATTGTGCAGATGCTTCAGATGAAAAGAACTGCAATAAC ACAGACTGCACACATTTCTATAAGCTTGGAGTGAAAACCACAGGGTTCATAAGATGTAATTCTACCTCACTGTGTGTTCTGCCAACCTGG ATATGCGACGGGTCTAATGACTGTGGAGACTATTCAGATGAATTAAAGTGCCCAGTTCAAAACAAACACAAATGTGAAGAAAATTATTTT AGTTGTCCTAGTGGAAGATGCATTTTGAATACCTGGATATGCGATGGTCAGAAAGATTGTGAGGATGGACGTGATGAATTCCACTGTGAT TCTTCTTGCTCTTGGAACCAATTTGCTTGTTCCGCACAAAAATGTATTTCTAAGCATTGGATTTGTGATGGAGAAGATGACTGTGGGGAT GGGTTAGATGAAAGTGACAGCATTTGTGGTGCCATAACCTGTGCTGCTGACATGTTCAGCTGCCAGGGCTCTCGTGCCTGCGTGCCCCGA CATTGGCTTTGTGATGGTGAAAGGGACTGTCCAGATGGAAGCGATGAGCTTTCCACAGCAGGCTGCGCTCCCAATAATACATGTGATGAA AATGCTTTCATGTGCCATAATAAAGTATGCATTCCCAAGCAATTTGTTTGTGACCATGATGACGACTGTGGAGATGGCTCTGATGAGTCA CCGCAGTGTGGATATCGACAGTGTGGTACAGAAGAATTTAGTTGTGCTGATGGGCGGTGTCTTCTAAATACTCAATGGCAGTGTGATGGA GACTTTGACTGTCCTGACCATTCTGATGAAGCACCTTTAAACCCAAAGTGTAAAAGTGCAGAACAGTCATGCAACAGTTCATTTTTTATG TGCAAAAATGGCAGGTGCATTCCCAGTGGAGGTCTTTGCGACAATAAGGATGACTGTGGCGATGGTTCAGATGAGAGAAACTGCCATATA AATGAATGTTTGAGTAAGAAAGTCAGTGGATGTTCTCAAGACTGTCAAGACCTTCCGGTCAGTTATAAGTGCAAATGCTGGCCTGGATTC CAACTGAAGGATGACGGCAAAACATGTGTAGACATTGATGAATGCTCTTCAGGCTTTCCCTGTAGCCAGCAATGCATCAATACATACGGG ACTTACAAGTGCCTCTGTACAGATGGGTATGAAATACAACCTGATAACCCAAATGGCTGCAAATCGCTCTCAGATGAAGAACCTTTTTTA ATTCTTGCTGATCATCATGAGATAAGGAAAATTAGCACTGATGGCTCCAACTACACACTTTTAAAACAGGGATTAAACAATGTTATTGCT ATAGACTTTGATTACAGAGAAGAATTCATCTATTGGATCGATTCTAGCCGACCCAATGGCAGTCGCATAAATAGAATGTGTTTAAATGGA AGTGACATTAAGGTAGTTCATAACACAGCGGTCCCCAATGCACTTGCTGTCGATTGGATTGGAAAAAACCTCTATTGGTCTGACACAGAA AAAAGAATCATTGAAGTATCCAAACTCAATGGCTTGTACCCTACTATACTCGTTAGCAAAAGGCTGAAGTTTCCCAGAGACTTGTCTTTA GATCCTCAAGCTGGATATTTGTATTGGATTGACTGCTGCGAGTATCCTCATATTGGCCGTGTTGGAATGGATGGAACCAATCAGAGTGTT GTCATAGAAACCAAGATTTCTAGACCTATGGCACTAACAATAGATTATGTTAATCGTAGACTCTACTGGGCCGATGAAAATCACATTGAA TTTAGCAACATGGATGGATCTCATAGACACAAAGTCCCTAATCAAGATATTCCAGGGGTGATTGCACTAACATTGTTTGAAGACTACATC TACTGGACTGATGGGAAAACCAAGTCACTCAGCCGTGCCCATAAAACATCGGGAGCAGACAGACTCTCACTGATTTACTCATGGCATGCC ATCACAGATATCCAGGTGTATCATTCTTATAGACAACCTGATGTCTCCAAACATCTCTGCATGATAAATAATGGTGGTTGCAGTCATTTG TGCCTTTTAGCCCCTGGAAAAACCCACACTTGTGCATGTCCCACTAACTTCTATCTGGCAGCTGATAATAGGACTTGCTTATCCAACTGC ACAGCCAGCCAGTTTCGTTGCAAAACTGACAAATGTATTCCATTCTGGTGGAAATGTGACACCGTGGATGACTGTGGTGATGGATCTGAT GAACCTGATGACTGTCCTGAATTTAGATGTCAGCCAGGCCGATTTCAGTGTGGGACTGGACTCTGTGCTCTACCAGCTTTCATCTGTGAT GGAGAGAATGATTGTGGAGACAATTCTGATGAACTCAACTGTGACACACATGTCTGCCTGTCAGGTCAATTCAAATGTACCAAGAACCAG AAATGTATCCCAGTAAACTTAAGATGTAATGGGCAAGATGACTGTGGTGATGAGGAAGATGAAAGAGACTGTCCTGAAAACAGCTGTTCT CCAGACTATTTCCAGTGTAAGACTACGAAGCATTGCATTTCCAAGCTGTGGGTTTGTGACGAGGATCCAGACTGTGCAGATGCATCAGAC GAGGCCAACTGCGATAAAAAGACTTGTGGACCTCATGAATTCCAGTGTAAAAACAACAACTGTATTCCCGATCACTGGCGGTGTGATAGC CAAAATGACTGCAGTGATAATTCAGATGAAGAAAACTGTAAGCCACAGACATGTACATTGAAAGATTTCCTCTGTGCCAATGGGGACTGT GTTTCTTCAAGGTTTTGGTGTGATGGAGATTTTGACTGTGCAGATGGCTCTGATGAGAGAAATTGTGAGACAAGTTGTTCCAAAGATCAG TTCCGGTGTTCCAATGGTCAGTGTATACCAGCAAAATGGAAATGTGATGGCCATGAAGACTGCAAATATGGGGAAGATGAGAAAAGCTGT GAGCCAGCTTCTCCTACTTGCTCATCACGTGAATATATATGTGCCAGTGATGGATGTATTTCAGCATCTTTGAAATGTAATGGAGAATAT GATTGTGCTGATGGTTCAGATGAGATGGACTGTGTGACTGAATGTAAGGAAGATCAGTTTCGGTGCAAAAATAAAGCCCACTGTATTCCA ATTAGATGGCTGTGTGATGGAATTCATGACTGTGTGGATGGCAGTGATGAAGAGAACTGTGAAAGAGGAGGAAATATATGTAGAGCTGAT GAGTTCCTTTGCAATAATTCTCTCTGCAAACTACATTTCTGGGTGTGTGATGGAGAGGACGACTGTGGAGACAACTCTGATGAAGCCCCT GATATGTGTGTCAAATTTCTTTGTCCATCCACGAGACCTCACAGATGCAGAAATAACAGAATATGCCTACAGTCGGAGCAAATGTGCAAT GGGATTGATGAATGCGGTGACAATTCAGATGAAGATCACTGTGGTGGTAAGCTGACATATAAAGCAAGGCCTTGTAAAAAGGATGAGTTT GCTTGTAGTAATAAAAAATGCATCCCTATGGATCTCCAGTGTGATCGACTTGATGACTGCGGAGATGGTTCAGATGAGCAAGGATGCAGA ATAGCTCCTACTGAATATACCTGTGAAGATAATGTGAATCCATGTGGAGATGATGCATATTGTAATCAAATAAAAACATCTGTTTTCTGT CGCTGTAAGCCTGGATTTCAGAGAAACATGAAAAACAGACAATGTGAAGACCTTAATGAATGTTTGGTGTTTGGCACATGTTCCCATCAA TGTATAAATGTGGAAGGATCATATAAATGTGTGTGTGACCAGAATTTTCAAGAAAGAAATAACACCTGCATAGCAGAAGGCTCTGAAGAT CAAGTTCTCTACATTGCTAATGACACTGATATCCTGGGTTTTATATATCCATTCAACTACAGTGGCGATCATCAACAAATTTCTCATATT GAACATAATTCAAGAATAACAGGGATGGATGTATATTATCAAAGAGATATGATTATTTGGAGTACTCAGTTTAATCCAGGCGGAATTTTC TACAAAAGGATCCATGGCAGAGAAAAAAGGCAAGCAAACAGTGGCTTGATTTGTCCTGAATTTAAAAGGCCCAGGGACATTGCAGTTGAC TGGGTGGCTGGAAACATTTACTGGACTGATCATTCTAGAATGCATTGGTTCAGTTACTACACTACTCACTGGACCAGTCTGAGGTACTCT ATCAACGTAGGGCAGCTGAATGGCCCCAACTGCACCAGACTCTTAACAAATATGGCTGGAGAACCCTATGCTATTGCAGTAAATCCTAAA AGAGGGATGATGTACTGGACTGTTGTTGGGGATCATTCCCATATAGAAGAAGCAGCCATGGATGGTACACTGAGAAGGATTTTAGTACAA AAGAACTTACAGAGACCCACAGGTTTGGCTGTGGATTATTTTAGTGAACGCATATATTGGGCTGACTTTGAGCTCTCCATCATTGGCAGT GTTCTGTATGATGGCTCTAATTCAGTAGTCTCTGTCAGCAGCAAACAAGGTTTATTACATCCACATAGGATCGATATCTTTGAAGATTAT ATATATGGAGCAGGACCTAAAAATGGTGTATTTCGAGTTCAAAAATTTGGCCATGGTTCAGTAGAGTACTTAGCTTTAAATATTGATAAA ACAAAAGGTGTTTTGATATCTCATCGTTATAAACAACTAGATTTACCCAATCCATGCTTGGATTTAGCATGCGAATTTCTTTGCTTGCTA AATCCTTCTGGGGCCACTTGTGTGTGTCCAGAAGGAAAATATTTGATTAATGGCACCTGCAATGATGACAGCCTGTTAGATGATTCATGT AAGTTAACTTGTGAAAATGGAGGAAGATGCATTTTAAATGAGAAAGGTGATTTGAGGTGTCACTGTTGGCCCAGTTATTCAGGAGAAAGA TGTGAAGTCAACCACTGTAGCAACTACTGCCAGAATGGAGGAACTTGCGTACCATCAGTTCTAGGGAGACCCACCTGCAGCTGTGCACTG GGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGTGAGGATTTTTGTCAAAATGGAGGAACCTGCATTGTGACTGCTGGAAACCAGCCT TACTGCCACTGCCAGCCGGAATACACCGGAGACAGATGTCAGTACTACGTGTGCCACCACTATTGTGTGAATTCTGAATCATGTACCATT GGGGATGATGGAAGTGTTGAATGTGTCTGTCCAACGCGCTATGAAGGACCAAAATGTGAGGTTGACAAGTGTGTAAGGTGCCATGGGGGG CACTGCATTATAAATAAAGACAGTGAAGATATATTTTGCAACTGCACTAATGGAAAGATTGCCTCTAGCTGTCAGTTATGTGATGGCTAC TGTTACAATGGTGGCACATGCCAGCTGGACCCCGAGACAAATGTACCTGTGTGTCTATGCTCCACCAACTGGTCAGGCACACAGTGTGAA AGGCCAGCCCCAAAGAGCAGCAAGTCTGATCATATCAGCACAAGAAGCATTGCCATCATTGTGCCTCTCGTCCTCTTGGTGACTTTGATA ACCACCTTAGTAATTGGTTTAGTGCTTTGTAAAAGAAAAAGAAGGACAAAAACAATTAGAAGACAACCTATTATCAATGGAGGAATAAAT GTAGAAATTGGCAATCCATCTTATAACATGTATGAGGTAGATCATGATCACAACGATGGAGGTCTTTTAGATCCTGGCTTTATGATAGAC CCAACAAAGGCCAGGTACATAGGGGGAGGACCCAGTGCTTTCAAGCTTCCACACACAGCGCCGCCCATCTACCTAAACTCTGATTTGAAA GGACCACTAACTGCTGGGCCAACAAATTACTCCAATCCGGTATATGCAAAATTATATATGGATGGGCAAAACTGTCGAAACTCCTTAGGA AGTGTTGATGAAAGGAAAGAACTGCTTCCAAAGAAAATAGAAATTGGTATAAGAGAGACAGTGGCATAATCAGTGATATCTTTTATATGC TGTATAAATGTATAAAATATAAGGATTACTTTTGTATGTTCCAACAGTATTATACTTGTTTTGGCATCAGCATTACCTCTTTCTTTATCT TTTTCCTGGTTAATTGTTTTCTGAGTTTTTTGGGTTTTATTTTTTGCTGATGACTATTGATTGACCATTTGTATGGTATTTTTATGAAAA AGAACTGCACTACAGTACAATTTACAACAATGCTGCTGATATGACACACCTTTGAATTTGTTAAAATTAAAAACAACGTATTCCTTTGTA GTGTGAATATGAGCAATCTATTTTATATGAACTTTTTTGGTTGTACTTAATCAACGAGGAGAATCTCTGCACTTTTCCATTATACGGTTT GAAGGCTGTAATACAGTGTCATATTATTTTTCTGTTTAAATTGATGGAAAAATGATTGAATGGTCAACTCTCTTCTTTGTGCCCATAAAG ATCGATTCAGACTCTGCTGAAAATATATAGCTCTCACAAGTTCAGCATCACCTGCTTTGAAATTAGCCTTAGATTGCCAACCAATAGATG AGAATTTTGAGGAAAAAAATTAAAAATATGTAAAATTAATAATTTGCATGAACACAGATGACTACATTTTCCAAAACTTAGTGGACTCTA TGTGATGTACTAAATGTATACACCTTGTAAGCAATAGTTATATTTAGGTGGTAGAACATAGCAAAAATATAACCGAAAGTTGGCCGACTG CACTTGCTATGGAATAAGACCTTTTATTCTCCCTCAGTCTCGAGATAAATAGCCAGCCTAGAGCACAACAGGGCATTGGGTACTTGCATC TTAGGTATTTCTTCCCAGTCACATCCATTTTGTGGAAGATTAACCCAACCCCTTACACTACACTGAACACTAAAGAATAATATATAAGCA CACAAATTGGTGACAGAATTTCAATTACGTGAACGCATCCTCTTTGCTAGGTCAAAAAACAAAGGGCAAAGCAGACATTTTAGTATACAG AGTGATTGGCAAATATTTTCAAGATTTAATATGAGCAACCCATTATTTGCCCTATCCAAAATATATTCAAGGGCCTTCCAAGTTGTAGAA GAACAATGATCTTCCCATAATCAAAAGTGGAGAGTCGAAATGCTGTGCCAGTTGCTCTGGTATTCAGGTTTCTCTGGGTTTTACAGAACG CATGGACCCCATTCACGTTTGGTTTGTTTATCTTCAAATTTGAGTTGAAACGAGTGCGATTTATTTAAGTTGTATATAAAAATAAAAGGA TAGCATTTTTATACAAATATCTTTAAAGGCACAAAAGATTTATTCACAAGTTTTGGAGGGCTTTTTGTTCCTCTGATAGACATGACTGAC TTTTAGCTGTCATAATGTATTAACCTAACAGATGAAATATGTTAAATATGTGGTTGCTCTTTATCCCTTTGTACAAGCATTAAAAAAACT GCTGTTTTATAAGAAGACTTTTTGTTGTACTATGTGCATGCATACTACCTATTTCTAAACTTTGCCATATTGAGGCCTTTATAAACTATT GATTTATGTAATACTAGTGCAATTTTGCTTGAACAATGTTATGCATATCATAAACTTTTTCAGGTTCTTGTTTAAGTACATTTTTTAAAT TGAACAGTATTTTTCATTTTGGTTATAATATAGTCATTTTGCCTATGTTTCTACAATGAAGTGTTAAATACTTTATAAAAAATTGTTGAC |
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FusionGenePPI for TXNL1_LRP1B |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TXNL1 | UCHL5, USP14, UBC, SH3BP4, PSMA6, PSMD14, RAD23A, PSMA1, PSMD7, PSMD4, PSMC3, EEF1A1, UBE3A, DDX39B, USP5, ATP6V1A, TXNDC17, VCL, USP7, XPOT, URM1, UBE2H, LACTB2, USP16, PDIA6, MINA, P4HB, CCT5, CSE1L, CCT2, CCT4, ADRM1, FLNB, NCAPD2, PSMC1, PSMC2, PSMC6, PSMD12, PSMD1, PSMD3, PSMD8, SQSTM1, KIAA0368, FLNC, KCMF1, PPP1R2P4, PSMD13, PSMD2, SHFM1, HSPB1, UNK, CORO1B, DHX9, LSM7, SFN, DNAJC10, NTRK1, BTRC, TXNIP | LRP1B | ARRB1, CUL4B, TAZ, RSPO1, SFRP4, PTPRK, FOXD4L6, ZFP41, EWSR1, LRPAP1, ZNF408, ZNF224, ZNF331, FAM19A3, ZNF563, ZNF517, ZNF169, SCGB1D1, DNAJC10, CHRDL1, OLFM3, EGFL6, TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TXNL1_LRP1B |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TXNL1_LRP1B |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | LRP1B | C0007134 | Renal Cell Carcinoma | 1 | CTD_human |
Tgene | LRP1B | C0025202 | melanoma | 1 | CTD_human |