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Fusion gene ID: 39926 |
FusionGeneSummary for TTC19_TMEM45A |
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Fusion gene information | Fusion gene name: TTC19_TMEM45A | Fusion gene ID: 39926 | Hgene | Tgene | Gene symbol | TTC19 | TMEM45A | Gene ID | 54902 | 55076 |
Gene name | tetratricopeptide repeat domain 19 | transmembrane protein 45A | |
Synonyms | 2010204O13Rik|MC3DN2 | DERP7|DNAPTP4 | |
Cytomap | 17p12 | 3q12.2 | |
Type of gene | protein-coding | protein-coding | |
Description | tetratricopeptide repeat protein 19, mitochondrialTPR repeat protein 19 | transmembrane protein 45ADNA polymerase-transactivated protein 4dermal papilla derived protein 7 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q6DKK2 | Q9NWC5 | |
Ensembl transtripts involved in fusion gene | ENST00000261647, ENST00000486880, ENST00000497842, | ENST00000323523, ENST00000403410, ENST00000462884, | |
Fusion gene scores | * DoF score | 5 X 4 X 4=80 | 4 X 3 X 4=48 |
# samples | 5 | 5 | |
** MAII score | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/48*10)=0.0588936890535686 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TTC19 [Title/Abstract] AND TMEM45A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | OV | TCGA-24-1428-01A | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000261647 | ENST00000323523 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
Frame-shift | ENST00000261647 | ENST00000403410 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
5CDS-intron | ENST00000261647 | ENST00000462884 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
Frame-shift | ENST00000486880 | ENST00000323523 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
Frame-shift | ENST00000486880 | ENST00000403410 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
5CDS-intron | ENST00000486880 | ENST00000462884 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
3UTR-3CDS | ENST00000497842 | ENST00000323523 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
3UTR-3CDS | ENST00000497842 | ENST00000403410 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
3UTR-intron | ENST00000497842 | ENST00000462884 | TTC19 | chr17 | 15930016 | + | TMEM45A | chr3 | 100287666 | + |
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FusionProtFeatures for TTC19_TMEM45A |
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Hgene | Tgene |
TTC19 | TMEM45A |
Required for the preservation of the structural andfunctional integrity of mitochondrial respiratory complex III byallowing the physiological turnover of the Rieske protein UQCRFS1(PubMed:21278747, PubMed:28673544). Involved in the clearance ofUQCRFS1 N-terminal fragments, which are produced uponincorporation of UQCRFS1 into the complex III and whose presenceis detrimental for its catalytic activity (PubMed:28673544).{ECO:0000269|PubMed:21278747, ECO:0000269|PubMed:28673544}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TTC19_TMEM45A |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TTC19_TMEM45A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TTC19 | UPF3B, SPRED1, HPS6, UBA1, CHMP4A, ATXN1, NAB2, REL, EIF4ENIF1, CCDC33, L3MBTL3, CCDC36, RHOD, CMPK1, RTBDN, GPANK1, KIAA1456, MYBPHL, ELMO1, FAM64A, GUK1, BPHL, C2orf48, SMC6, PAK7, EXT2, RHPN1, GCNT1, ARHGAP36, C17orf89, FOXD4, RPL18, SLAIN2, FDPS, DYNC2LI1, C12orf74, SCAMP1, TRIM25 | TMEM45A |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TTC19_TMEM45A |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TTC19_TMEM45A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TTC19 | C0021359 | Infertility | 1 | CTD_human |
Hgene | TTC19 | C0027765 | nervous system disorder | 1 | CTD_human |
Hgene | TTC19 | C0524851 | Neurodegenerative Disorders | 1 | CTD_human;HPO |
Hgene | TTC19 | C0751830 | Gait Disorders, Neurologic | 1 | CTD_human |