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Fusion gene ID: 39809 |
FusionGeneSummary for TSPAN13_BZW2 |
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Fusion gene information | Fusion gene name: TSPAN13_BZW2 | Fusion gene ID: 39809 | Hgene | Tgene | Gene symbol | TSPAN13 | BZW2 | Gene ID | 27075 | 28969 |
Gene name | tetraspanin 13 | basic leucine zipper and W2 domains 2 | |
Synonyms | NET-6|NET6|TM4SF13 | HSPC028|MST017|MSTP017 | |
Cytomap | 7p21.1 | 7p21.1 | |
Type of gene | protein-coding | protein-coding | |
Description | tetraspanin-13tetraspan NET-6transmembrane 4 superfamily member 13transmembrane 4 superfamily member tetraspan NET-6tspan-13 | basic leucine zipper and W2 domain-containing protein 2 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O95857 | Q9Y6E2 | |
Ensembl transtripts involved in fusion gene | ENST00000262067, ENST00000466195, | ENST00000258761, ENST00000433922, ENST00000432311, ENST00000452975, ENST00000405202, ENST00000407633, | |
Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 6 X 5 X 3=90 |
# samples | 4 | 6 | |
** MAII score | log2(4/18*10)=1.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TSPAN13 [Title/Abstract] AND BZW2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-XF-AAMG-01A | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000262067 | ENST00000258761 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
In-frame | ENST00000262067 | ENST00000433922 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
5CDS-intron | ENST00000262067 | ENST00000432311 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
5CDS-3UTR | ENST00000262067 | ENST00000452975 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
5CDS-3UTR | ENST00000262067 | ENST00000405202 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
5CDS-3UTR | ENST00000262067 | ENST00000407633 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
intron-3CDS | ENST00000466195 | ENST00000258761 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
intron-3CDS | ENST00000466195 | ENST00000433922 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
intron-intron | ENST00000466195 | ENST00000432311 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
intron-3UTR | ENST00000466195 | ENST00000452975 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
intron-3UTR | ENST00000466195 | ENST00000405202 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
intron-3UTR | ENST00000466195 | ENST00000407633 | TSPAN13 | chr7 | 16793655 | + | BZW2 | chr7 | 16734459 | + |
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FusionProtFeatures for TSPAN13_BZW2 |
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Hgene | Tgene |
TSPAN13 | BZW2 |
May be involved in neuronal differentiation.{ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 1_19 | 21 | 205 | Topological domain | Cytoplasmic |
Tgene | >BZW2 | chr7:16793655 | chr7:16734459 | ENST00000258761 | + | 6 | 12 | 248_415 | 217 | 420 | Domain | W2 |
Tgene | >BZW2 | chr7:16793655 | chr7:16734459 | ENST00000433922 | + | 6 | 12 | 248_415 | 217 | 420 | Domain | W2 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 189_204 | 21 | 205 | Topological domain | Cytoplasmic |
Hgene | >TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 41_44 | 21 | 205 | Topological domain | Extracellular |
Hgene | >TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 66_72 | 21 | 205 | Topological domain | Cytoplasmic |
Hgene | >TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 94_167 | 21 | 205 | Topological domain | Extracellular |
Hgene | >TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 168_188 | 21 | 205 | Transmembrane | Helical |
Hgene | >TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 20_40 | 21 | 205 | Transmembrane | Helical |
Hgene | >TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 45_65 | 21 | 205 | Transmembrane | Helical |
Hgene | >TSPAN13 | chr7:16793655 | chr7:16734459 | ENST00000262067 | + | 1 | 6 | 73_93 | 21 | 205 | Transmembrane | Helical |
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FusionGeneSequence for TSPAN13_BZW2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TSPAN13_BZW2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TSPAN13 | ELAVL1, APP, GLP1R | BZW2 | BZW1, PSTPIP1, GSK3B, ELAVL1, VCP, FN1, EGFR, ABHD14A, CAPN1, CNBP, DFFA, EIF6, HSPA9, PFAS, CTSA, PPP5C, C11orf58, GINS3, PAFAH1B2, PHKG2, PTPLAD1, EIF2A, EIF2B1, EIF3A, STX12, RAB1B, CD68, GPR183, LYPD3, SCN2B, CYFIP1, EIF5, HSD17B10, STAG2, NTRK1, CDH1, PTPRE, MUL1, EXOG, NT5C3A, CANT1, ENDOD1, TMEM43, TMEM206, ZFPL1, SCCPDH, GYPB, MRS2, MAVS, OMA1, TVP23C, NXT1, RRAS, NRAS, VIPR2, SLC27A2, PTPRN, TPTE, SMDT1, EIF2B2, EIF2B4 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TSPAN13_BZW2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TSPAN13_BZW2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |