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Fusion gene ID: 39664 |
FusionGeneSummary for TRPC4AP_RBM39 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TRPC4AP_RBM39 | Fusion gene ID: 39664 | Hgene | Tgene | Gene symbol | TRPC4AP | RBM39 | Gene ID | 26133 | 9584 |
| Gene name | transient receptor potential cation channel subfamily C member 4 associated protein | RNA binding motif protein 39 | |
| Synonyms | C20orf188|PPP1R158|TRRP4AP|TRUSS | CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 | |
| Cytomap | 20q11.22 | 20q11.22 | |
| Type of gene | protein-coding | protein-coding | |
| Description | short transient receptor potential channel 4-associated proteinTNF-receptor ubiquitous scaffolding/signaling proteinTRP4-associated proteinprotein phosphatase 1, regulatory subunit 158trpc4-associated proteintumor necrosis factor receptor-associated | RNA-binding protein 39CAPER alphaRNA-binding region (RNP1, RRM) containing 2coactivator of activating protein-1 and estrogen receptorsfunctional spliceosome-associated protein 59hepatocellular carcinoma protein 1splicing factor HCC1 | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q8TEL6 | Q14498 | |
| Ensembl transtripts involved in fusion gene | ENST00000451813, ENST00000252015, ENST00000539834, ENST00000432634, | ENST00000253363, ENST00000361162, ENST00000528062, ENST00000407261, ENST00000397370, ENST00000463098, | |
| Fusion gene scores | * DoF score | 12 X 7 X 8=672 | 7 X 8 X 4=224 |
| # samples | 12 | 10 | |
| ** MAII score | log2(12/672*10)=-2.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/224*10)=-1.16349873228288 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: TRPC4AP [Title/Abstract] AND RBM39 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | TRPC4AP | GO:0006511 | ubiquitin-dependent protein catabolic process | 20551172 |
| Hgene | TRPC4AP | GO:0016567 | protein ubiquitination | 20551172 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | ESCA | TCGA-L5-A4OQ-01A | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000451813 | ENST00000253363 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| In-frame | ENST00000451813 | ENST00000361162 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| In-frame | ENST00000451813 | ENST00000528062 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| In-frame | ENST00000451813 | ENST00000407261 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| 5CDS-intron | ENST00000451813 | ENST00000397370 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| 5CDS-intron | ENST00000451813 | ENST00000463098 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| In-frame | ENST00000252015 | ENST00000253363 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| In-frame | ENST00000252015 | ENST00000361162 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| In-frame | ENST00000252015 | ENST00000528062 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| In-frame | ENST00000252015 | ENST00000407261 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| 5CDS-intron | ENST00000252015 | ENST00000397370 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| 5CDS-intron | ENST00000252015 | ENST00000463098 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-3CDS | ENST00000539834 | ENST00000253363 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-3CDS | ENST00000539834 | ENST00000361162 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-3CDS | ENST00000539834 | ENST00000528062 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-3CDS | ENST00000539834 | ENST00000407261 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-intron | ENST00000539834 | ENST00000397370 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-intron | ENST00000539834 | ENST00000463098 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-3CDS | ENST00000432634 | ENST00000253363 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-3CDS | ENST00000432634 | ENST00000361162 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-3CDS | ENST00000432634 | ENST00000528062 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-3CDS | ENST00000432634 | ENST00000407261 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-intron | ENST00000432634 | ENST00000397370 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
| intron-intron | ENST00000432634 | ENST00000463098 | TRPC4AP | chr20 | 33657099 | - | RBM39 | chr20 | 34304727 | - |
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FusionProtFeatures for TRPC4AP_RBM39 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TRPC4AP | RBM39 |
| Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3ubiquitin-protein ligase complex required for cell cycle control.The DCX(TRUSS) complex specifically mediates thepolyubiquitination and subsequent degradation of MYC. Alsoparticipates in the activation of NFKB1 in response to ligation ofTNFRSF1A, possibly by linking TNFRSF1A to the IKK signalosome.Involved in JNK activation via its interaction with TRAF2. Alsoinvolved in elevation of endoplasmic reticulum Ca(2+) storagereduction in response to CHRM1. {ECO:0000269|PubMed:20551172}. | Transcriptional coactivator for steroid nuclearreceptors ESR1/ER-alpha and ESR2/ER-beta, and JUN/AP-1 (Bysimilarity). May be involved in pre-mRNA splicing process.{ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 409_416 | 275 | 531 | Compositional bias | Note=Poly-Ala |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 409_416 | 275 | 525 | Compositional bias | Note=Poly-Ala |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 409_416 | 253 | 509 | Compositional bias | Note=Poly-Ala |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 445_508 | 275 | 531 | Domain | RRM 3 |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 445_508 | 275 | 525 | Domain | RRM 3 |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 250_328 | 253 | 509 | Domain | RRM 2 |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 445_508 | 253 | 509 | Domain | RRM 3 |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 291_355 | 275 | 531 | Region | Activating domain |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 291_355 | 275 | 525 | Region | Activating domain |
| Tgene | >RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 291_355 | 253 | 509 | Region | Activating domain |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 41_90 | 275 | 531 | Compositional bias | Note=Arg/Ser-rich (RS domain) |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 41_90 | 275 | 525 | Compositional bias | Note=Arg/Ser-rich (RS domain) |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 41_90 | 253 | 509 | Compositional bias | Note=Arg/Ser-rich (RS domain) |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 153_230 | 275 | 531 | Domain | RRM 1 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 250_328 | 275 | 531 | Domain | RRM 2 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 153_230 | 275 | 525 | Domain | RRM 1 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 250_328 | 275 | 525 | Domain | RRM 2 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 153_230 | 253 | 509 | Domain | RRM 1 |
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FusionGeneSequence for TRPC4AP_RBM39 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000253363_chr20_34304727_-_394aa MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSD FVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA GRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQT EASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000361162_chr20_34304727_-_388aa MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSD FVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA GRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALA AAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITA >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000528062_chr20_34304727_-_394aa MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSD FVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA GRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQT EASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000407261_chr20_34304727_-_394aa MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSD FVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA GRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQT EASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000253363_chr20_34304727_-_394aa MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSD FVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA GRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQT EASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000361162_chr20_34304727_-_388aa MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSD FVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA GRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALA AAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000528062_chr20_34304727_-_394aa MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSD FVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA GRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQT EASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000407261_chr20_34304727_-_394aa MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSD FVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA GRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQT EASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000253363_chr20_34304727_-_1182nt ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000361162_chr20_34304727_-_1164nt ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGATTTGCAAACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCT GCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGAT ACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAAT GTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCA >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000528062_chr20_34304727_-_1182nt ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000407261_chr20_34304727_-_1182nt ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000253363_chr20_34304727_-_1182nt ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000361162_chr20_34304727_-_1164nt ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGATTTGCAAACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCT GCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGAT ACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAAT GTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000528062_chr20_34304727_-_1182nt ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000407261_chr20_34304727_-_1182nt ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000253363_chr20_34304727_-_2079nt GCTTCCTGTTTGTCCGACGAGGAGACATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAG TGGCGGCTTGGGGCGGATGGGGCGGCCGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGG TCCGGGCGGTGCAGTTCACTGAGACTTTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGC ACACCACCAGCCACCTCCACAGTGACTTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCAT TTGTTACTGAAGAGAGGAAACTTACCCAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTA TCCAGCTGATGATGGACAGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGG AACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTT TGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTT TGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATT TGCAAACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCT CTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAG GAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCA ATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTA TGACAGCAACACAGCTACTGGTTCCAAGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCA TCTTGAGTTATCTTTTATTTAGATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAA ATGTTAACAGGAATGCAGTGTGCTCATTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCCTTTTAAAATGT TCATGTAGAAAATTAATGAACTATAGGAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAAAGGCAGACCAGGGATGTAATGTTTTTA ATGTTTCAGAAGCCTAACTTTTTACACAGTGGTTACATTTCACATTTCACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAA TACACATTTAGTGTATGGAAATACAAGACAGCTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGA GATTTCAAAATTATATTTCTTGATGGTATCTTTTCAATTAATGTATCTGTAAAAGTTTCTTTGTAAATACTATGTGTTCTGGTGTGTCTT AAAATTCCAAACAAAATGATCCCTGCATTTCCTGAAGATGTTTAAACGTGAGAGTCTGGTAGGCAAAGCAGTCTGAGAAAGAAATAGGAA ATGCAGAAATAGGTTTTGTCTGGTTGCATATAATCTTTGCTCTTTTTAAGCTCTGTGAGCTCTGAAATATATTTTTGGGTTACTTCAGTG TGTTTGACAAGACAGCTTGATATTTCTATCAAACAAATGACTTTCATATTGCAACAATCTTTGTAAGAACCACTCAAATAAAAGTCTCTT >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000361162_chr20_34304727_-_2061nt GCTTCCTGTTTGTCCGACGAGGAGACATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAG TGGCGGCTTGGGGCGGATGGGGCGGCCGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGG TCCGGGCGGTGCAGTTCACTGAGACTTTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGC ACACCACCAGCCACCTCCACAGTGACTTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCAT TTGTTACTGAAGAGAGGAAACTTACCCAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTA TCCAGCTGATGATGGACAGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGG AACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTT TGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTT TGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGATTTGCAAACAAGACTTTCCC AGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTC AAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATG TTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGT GGTTTGCTGGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTAC TGGTTCCAAGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTAT TTAGATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTTAACAGGAATGCAG TGTGCTCATTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCCTTTTAAAATGTTCATGTAGAAAATTAATG AACTATAGGAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAAAGGCAGACCAGGGATGTAATGTTTTTAATGTTTCAGAAGCCTAAC TTTTTACACAGTGGTTACATTTCACATTTCACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAATACACATTTAGTGTATGG AAATACAAGACAGCTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGAGATTTCAAAATTATATTT CTTGATGGTATCTTTTCAATTAATGTATCTGTAAAAGTTTCTTTGTAAATACTATGTGTTCTGGTGTGTCTTAAAATTCCAAACAAAATG ATCCCTGCATTTCCTGAAGATGTTTAAACGTGAGAGTCTGGTAGGCAAAGCAGTCTGAGAAAGAAATAGGAAATGCAGAAATAGGTTTTG TCTGGTTGCATATAATCTTTGCTCTTTTTAAGCTCTGTGAGCTCTGAAATATATTTTTGGGTTACTTCAGTGTGTTTGACAAGACAGCTT >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000528062_chr20_34304727_-_1791nt GCTTCCTGTTTGTCCGACGAGGAGACATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAG TGGCGGCTTGGGGCGGATGGGGCGGCCGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGG TCCGGGCGGTGCAGTTCACTGAGACTTTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGC ACACCACCAGCCACCTCCACAGTGACTTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCAT TTGTTACTGAAGAGAGGAAACTTACCCAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTA TCCAGCTGATGATGGACAGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGG AACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTT TGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTT TGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATT TGCAAACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCT CTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAG GAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCA ATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTA TGACAGCAACACAGCTACTGGTTCCAAGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCA TCTTGAGTTATCTTTTATTTAGATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAA ATGTTAACAGGAATGCAGTGTGCTCATTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCCTTTTAAAATGT TCATGTAGAAAATTAATGAACTATAGGAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAAAGGCAGACCAGGGATGTAATGTTTTTA ATGTTTCAGAAGCCTAACTTTTTACACAGTGGTTACATTTCACATTTCACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAA TACACATTTAGTGTATGGAAATACAAGACAGCTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGA >In-frame_TRPC4AP_ENST00000451813_chr20_33657099_-_RBM39_ENST00000407261_chr20_34304727_-_1361nt GCTTCCTGTTTGTCCGACGAGGAGACATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAG TGGCGGCTTGGGGCGGATGGGGCGGCCGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGG TCCGGGCGGTGCAGTTCACTGAGACTTTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGC ACACCACCAGCCACCTCCACAGTGACTTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCAT TTGTTACTGAAGAGAGGAAACTTACCCAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTA TCCAGCTGATGATGGACAGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGG AACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTT TGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTT TGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATT TGCAAACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCT CTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAG GAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCA ATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTA TGACAGCAACACAGCTACTGGTTCCAAGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCA TCTTGAGTTATCTTTTATTTAGATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAA >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000253363_chr20_34304727_-_2143nt ACTGGGGGCGCTGCGGCGACCCCTCCGCCGCCCCGTAGAAATCTCCGCGGCCCCGAGGCCGCTTGCTTCCTGTTTGTCCGACGAGGAGAC ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA AGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTAGATAA AAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTTAACAGGAATGCAGTGTGCTCA TTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCCTTTTAAAATGTTCATGTAGAAAATTAATGAACTATAG GAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAAAGGCAGACCAGGGATGTAATGTTTTTAATGTTTCAGAAGCCTAACTTTTTACA CAGTGGTTACATTTCACATTTCACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAATACACATTTAGTGTATGGAAATACAA GACAGCTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGAGATTTCAAAATTATATTTCTTGATGG TATCTTTTCAATTAATGTATCTGTAAAAGTTTCTTTGTAAATACTATGTGTTCTGGTGTGTCTTAAAATTCCAAACAAAATGATCCCTGC ATTTCCTGAAGATGTTTAAACGTGAGAGTCTGGTAGGCAAAGCAGTCTGAGAAAGAAATAGGAAATGCAGAAATAGGTTTTGTCTGGTTG CATATAATCTTTGCTCTTTTTAAGCTCTGTGAGCTCTGAAATATATTTTTGGGTTACTTCAGTGTGTTTGACAAGACAGCTTGATATTTC >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000361162_chr20_34304727_-_2125nt ACTGGGGGCGCTGCGGCGACCCCTCCGCCGCCCCGTAGAAATCTCCGCGGCCCCGAGGCCGCTTGCTTCCTGTTTGTCCGACGAGGAGAC ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGATTTGCAAACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCT GCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGAT ACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAAT GTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCA GCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGATGAAGGAAG ATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTAGATAAAAATAAAGAGGCAAGGAT CTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTTAACAGGAATGCAGTGTGCTCATTCTCCCTAAATAGTAAA TCCCACTGTATACAAAACTGTTCTCTTGTTCTGCCTTTTAAAATGTTCATGTAGAAAATTAATGAACTATAGGAATAGCTCTAGGAGAAC AAATGTGCTTTCTGTAAAAAGGCAGACCAGGGATGTAATGTTTTTAATGTTTCAGAAGCCTAACTTTTTACACAGTGGTTACATTTCACA TTTCACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAATACACATTTAGTGTATGGAAATACAAGACAGCTAAAGGGCTGTT TGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGAGATTTCAAAATTATATTTCTTGATGGTATCTTTTCAATTAATGT ATCTGTAAAAGTTTCTTTGTAAATACTATGTGTTCTGGTGTGTCTTAAAATTCCAAACAAAATGATCCCTGCATTTCCTGAAGATGTTTA AACGTGAGAGTCTGGTAGGCAAAGCAGTCTGAGAAAGAAATAGGAAATGCAGAAATAGGTTTTGTCTGGTTGCATATAATCTTTGCTCTT TTTAAGCTCTGTGAGCTCTGAAATATATTTTTGGGTTACTTCAGTGTGTTTGACAAGACAGCTTGATATTTCTATCAAACAAATGACTTT >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000528062_chr20_34304727_-_1855nt ACTGGGGGCGCTGCGGCGACCCCTCCGCCGCCCCGTAGAAATCTCCGCGGCCCCGAGGCCGCTTGCTTCCTGTTTGTCCGACGAGGAGAC ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA AGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTAGATAA AAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTTAACAGGAATGCAGTGTGCTCA TTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCCTTTTAAAATGTTCATGTAGAAAATTAATGAACTATAG GAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAAAGGCAGACCAGGGATGTAATGTTTTTAATGTTTCAGAAGCCTAACTTTTTACA CAGTGGTTACATTTCACATTTCACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAATACACATTTAGTGTATGGAAATACAA GACAGCTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGAGATTTCAAAATTATATTTCTTGATGG >In-frame_TRPC4AP_ENST00000252015_chr20_33657099_-_RBM39_ENST00000407261_chr20_34304727_-_1425nt ACTGGGGGCGCTGCGGCGACCCCTCCGCCGCCCCGTAGAAATCTCCGCGGCCCCGAGGCCGCTTGCTTCCTGTTTGTCCGACGAGGAGAC ATGGCGGCGGCGCCGGTAGCGGCTGGGTCTGGAGCCGGCCGAGGGAGACGGTCGGCAGCCACAGTGGCGGCTTGGGGCGGATGGGGCGGC CGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAGTTCACTGAGACT TTTTTGACGGAGAGGGACAAACAATCCAAGTGGAGTGGAATTCCTCAGCTGCTCCTCAAGCTGCACACCACCAGCCACCTCCACAGTGAC TTTGTTGAGTGTCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGAGAGGAAACTTACC CAAGAAACCACTTATCCAAATACTTACATTTTTGACTTGTTTGGAGGTGTTGATATTGAAAGTATCCAGCTGATGATGGACAGTGAAACT GGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCA GGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACT GGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAA GCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACT GAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAA GAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAA AATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCT GGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCA AGTAGACGATGAAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTAGATAA |
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FusionGenePPI for TRPC4AP_RBM39 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| TRPC4AP | TNFRSF1A, TRADD, IKBKB, IKBKG, CHUK, TRAF2, RIPK1, DDB1, CUL4A, MYC, DDA1, RBX1, TAB1, COPS5, CHMP4C, TRPC1, TRPC4, TRPC5, PRG2, SKP2, SRPR, MYH7B, SMCHD1, CCDC6, CUL4B, NCOA1, C4orf26, HERC1, RBBP6, SCAF11, EPB41L5, RNMT, KLC1, SULF2, KDM4D, UNKL, MPZL1, IQGAP1, VWA9, PRRC2C, SETD2, PRRC2A, NOS1AP, SEC23IP, TRIM32, TRIM25 | RBM39 | ESR2, ESR1, JUN, HNRNPA1, CDK9, KHDRBS2, SRRM1, SRRM2, HIST1H1C, CTNNBL1, TADA2A, UBC, MME, HDAC5, SND1, RPS2, RPS3, ACIN1, SNRNP200, CDK12, SF3B1, RBM25, PNN, U2AF2, PCBP3, TRA2B, LUC7L2, SRSF7, SRSF1, SAP18, SNRPD1, HNRNPU, XRCC5, XRCC6, IRF2BP2, RPS13, RPL27A, IRF2BPL, HDGF, SF3A2, SIRT7, TCF3, NR2C1, CUL3, CUL1, COPS5, CAND1, PGR, APP, SMU1, DDX3X, BCAS2, PLRG1, NHP2L1, USP39, PRPF19, RALY, TOP1, DDX21, GPATCH1, ILF3, RRP7A, SEPT7, TRMT112, UTP14A, S100A9, RRS1, RAN, SEPT2, RBM14, VTN, FLNA, RPS14, BARD1, MDC1, MAGOH, PRPF40A, CHERP, RBM23, PRPF3, PRPF38A, SAP30BP, HNRNPH2, NKAP, TOE1, TTC14, ZCCHC10, RNF113A, SRPK2, AICDA, SRPK1, CLK2, SRPK3, TARDBP, RPA3, RPA2, RPA1, WWOX, SPRTN, TP53, PHC2, GOLGA2, REL, SDCBP, SP100, MLX, ZBTB22, SRSF11, PPIG, SF3B4, KIAA0907, ARL6IP4, BANP, THAP1, C11orf57, HOMEZ, AK8, FAM200A, SREK1IP1, KRTAP12-2, RP9P, NXF1, CUL7, OBSL1, EZH2, SUZ12, EED, RNF2, HSPB1, PNISR, RBM14-RBM4, CDC5L, SNRNP70, RNPS1, SON, SREK1, SFN, NTRK1, CLK1, AHSA1, SEC16A, LAP3, KMT2E, SNW1, CRBN, ZNF746, EGFR, JMJD6, NCL, MTNR1A, INO80B, TRIM25, MCPH1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 355_406 | 275 | 531 | ESR1 and ESR2 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 355_406 | 275 | 525 | ESR1 and ESR2 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 355_406 | 253 | 509 | ESR1 and ESR2 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 291_406 | 275 | 531 | JUN |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 291_406 | 275 | 525 | JUN |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 291_406 | 253 | 509 | JUN |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000253363 | - | 8 | 17 | 406_530 | 275 | 531 | NCOA6 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000361162 | - | 8 | 17 | 406_530 | 275 | 525 | NCOA6 |
| Tgene | RBM39 | chr20:33657099 | chr20:34304727 | ENST00000528062 | - | 7 | 16 | 406_530 | 253 | 509 | NCOA6 |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Hgene | TRPC4AP | chr20:33657099 | chr20:34304727 | ENST00000252015 | - | 3 | 19 | 2_400 | 138 | 798 | TNFRSF1A |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TRPC4AP_RBM39 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRPC4AP_RBM39 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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