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Fusion gene ID: 39622 |
FusionGeneSummary for TRIT1_ABCA10 |
Fusion gene summary |
Fusion gene information | Fusion gene name: TRIT1_ABCA10 | Fusion gene ID: 39622 | Hgene | Tgene | Gene symbol | TRIT1 | ABCA10 | Gene ID | 54802 | 10349 |
Gene name | tRNA isopentenyltransferase 1 | ATP binding cassette subfamily A member 10 | |
Synonyms | COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 | EST698739 | |
Cytomap | 1p34.2 | 17q24.3 | |
Type of gene | protein-coding | protein-coding | |
Description | tRNA dimethylallyltransferaseIPP transferaseisopentenyl-diphosphate:tRNA isopentenyltransferasetRNA dimethylallyltransferase, mitochondrialtRNA isopentenylpyrophosphate transferase | ATP-binding cassette sub-family A member 10ATP-binding cassette A10ATP-binding cassette, sub-family A (ABC1), member 10 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9H3H1 | Q8WWZ4 | |
Ensembl transtripts involved in fusion gene | ENST00000441669, ENST00000316891, ENST00000372818, ENST00000491865, ENST00000541099, ENST00000537440, ENST00000537223, ENST00000545233, ENST00000544981, | ENST00000416101, ENST00000269081, ENST00000432313, ENST00000519732, ENST00000423818, | |
Fusion gene scores | * DoF score | 5 X 1 X 3=15 | 3 X 3 X 3=27 |
# samples | 3 | 3 | |
** MAII score | log2(3/15*10)=1 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TRIT1 [Title/Abstract] AND ABCA10 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LIHC | TCGA-PD-A5DF-01A | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000441669 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
Frame-shift | ENST00000441669 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
Frame-shift | ENST00000441669 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5CDS-intron | ENST00000441669 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5CDS-intron | ENST00000441669 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
In-frame | ENST00000316891 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
Frame-shift | ENST00000316891 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
Frame-shift | ENST00000316891 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5CDS-intron | ENST00000316891 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5CDS-intron | ENST00000316891 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
In-frame | ENST00000372818 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
Frame-shift | ENST00000372818 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
Frame-shift | ENST00000372818 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5CDS-intron | ENST00000372818 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5CDS-intron | ENST00000372818 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000491865 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000491865 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000491865 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000491865 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000491865 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000541099 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000541099 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000541099 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000541099 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000541099 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000537440 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000537440 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000537440 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000537440 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000537440 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000537223 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000537223 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000537223 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000537223 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000537223 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000545233 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000545233 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-3CDS | ENST00000545233 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000545233 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5UTR-intron | ENST00000545233 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
In-frame | ENST00000544981 | ENST00000416101 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
Frame-shift | ENST00000544981 | ENST00000269081 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
Frame-shift | ENST00000544981 | ENST00000432313 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5CDS-intron | ENST00000544981 | ENST00000519732 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
5CDS-intron | ENST00000544981 | ENST00000423818 | TRIT1 | chr1 | 40348990 | - | ABCA10 | chr17 | 67193263 | - |
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FusionProtFeatures for TRIT1_ABCA10 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
TRIT1 | ABCA10 |
Probable transporter which may play a role in macrophagelipid homeostasis. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000316891 | - | 1 | 11 | 32_37 | 58 | 468 | Region | Substrate binding |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000372818 | - | 1 | 10 | 32_37 | 58 | 442 | Region | Substrate binding |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000441669 | - | 1 | 9 | 32_37 | 58 | 386 | Region | Substrate binding |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 1206_1440 | 391 | 1544 | Domain | ABC transporter 2 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 391_626 | 391 | 1544 | Domain | ABC transporter 1 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 1206_1440 | 391 | 449 | Domain | ABC transporter 2 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 391_626 | 391 | 449 | Domain | ABC transporter 1 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 1206_1440 | -137 | 93 | Domain | ABC transporter 2 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 391_626 | -137 | 93 | Domain | ABC transporter 1 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 1206_1440 | 391 | 453 | Domain | ABC transporter 2 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 391_626 | 391 | 453 | Domain | ABC transporter 1 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 1239_1246 | 391 | 1544 | Nucleotide binding | ATP 2 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 427_434 | 391 | 1544 | Nucleotide binding | ATP 1 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 1239_1246 | 391 | 449 | Nucleotide binding | ATP 2 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 427_434 | 391 | 449 | Nucleotide binding | ATP 1 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 1239_1246 | -137 | 93 | Nucleotide binding | ATP 2 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 427_434 | -137 | 93 | Nucleotide binding | ATP 1 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 1239_1246 | 391 | 453 | Nucleotide binding | ATP 2 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 427_434 | 391 | 453 | Nucleotide binding | ATP 1 |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 1014_1034 | 391 | 1544 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 1046_1066 | 391 | 1544 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 1073_1093 | 391 | 1544 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 1113_1133 | 391 | 1544 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 774_794 | 391 | 1544 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 890_910 | 391 | 1544 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 926_946 | 391 | 1544 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 985_1005 | 391 | 1544 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 1014_1034 | 391 | 449 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 1046_1066 | 391 | 449 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 1073_1093 | 391 | 449 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 1113_1133 | 391 | 449 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 774_794 | 391 | 449 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 890_910 | 391 | 449 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 926_946 | 391 | 449 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 985_1005 | 391 | 449 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 1014_1034 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 1046_1066 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 1073_1093 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 1113_1133 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 135_155 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 185_205 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 210_230 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 240_260 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 264_284 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 310_330 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 774_794 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 83_103 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 890_910 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 926_946 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000423818 | - | 0 | 5 | 985_1005 | -137 | 93 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 1014_1034 | 391 | 453 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 1046_1066 | 391 | 453 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 1073_1093 | 391 | 453 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 1113_1133 | 391 | 453 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 774_794 | 391 | 453 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 890_910 | 391 | 453 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 926_946 | 391 | 453 | Transmembrane | Helical |
Tgene | >ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 985_1005 | 391 | 453 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000316891 | - | 1 | 11 | 395_425 | 58 | 468 | Zinc finger | Note=Matrin-type |
Hgene | >TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000372818 | - | 1 | 10 | 395_425 | 58 | 442 | Zinc finger | Note=Matrin-type |
Hgene | >TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000441669 | - | 1 | 9 | 395_425 | 58 | 386 | Zinc finger | Note=Matrin-type |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 135_155 | 391 | 1544 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 185_205 | 391 | 1544 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 210_230 | 391 | 1544 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 240_260 | 391 | 1544 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 264_284 | 391 | 1544 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 310_330 | 391 | 1544 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000269081 | - | 10 | 40 | 83_103 | 391 | 1544 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 135_155 | 391 | 449 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 185_205 | 391 | 449 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 210_230 | 391 | 449 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 240_260 | 391 | 449 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 264_284 | 391 | 449 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 310_330 | 391 | 449 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000416101 | - | 10 | 39 | 83_103 | 391 | 449 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 135_155 | 391 | 453 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 185_205 | 391 | 453 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 210_230 | 391 | 453 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 240_260 | 391 | 453 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 264_284 | 391 | 453 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 310_330 | 391 | 453 | Transmembrane | Helical |
Tgene | ABCA10 | chr1:40348990 | chr17:67193263 | ENST00000432313 | - | 10 | 13 | 83_103 | 391 | 453 | Transmembrane | Helical |
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FusionGeneSequence for TRIT1_ABCA10 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_TRIT1_ENST00000441669_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_58aa >In-frame_TRIT1_ENST00000316891_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_58aa >In-frame_TRIT1_ENST00000372818_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_58aa >In-frame_TRIT1_ENST00000544981_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_58aa |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_TRIT1_ENST00000441669_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_174nt ATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGG >In-frame_TRIT1_ENST00000316891_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_174nt ATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGG >In-frame_TRIT1_ENST00000372818_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_174nt ATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGG >In-frame_TRIT1_ENST00000544981_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_174nt ATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_TRIT1_ENST00000441669_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_4275nt ATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGG GCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAGAATCAG AAATGTTATAAAAGAATATAATGGAAAGACTGGAAAAGTAGAAGCATTGCAAGGCATATTTTTTGACATATATGAAGGACAGATCACTGC AATACTTGGGCATAATGGAGCTGGTAAATCAACACTGCTAAACATTCTTAGTGGATTGTCTGTTTCTACAGAAGGTAAAAAGAATTATAA TGGAATTAGACATGCAAAGCATTCAAGACATTATTGCTAAAAAATTAAGTGGTGGGCAGAAGAGAAAACTAACACTAGGGATTGCCATCT TAGGAGATCCTCAGGTTTTGCTGCTAGATGAACCAACTGCTGGATTGGATCCCTTTTCAAGACACCGAGTGTGGAGCCTCCTGAAGGAGC ATAAAGTAGACCGACTTATCCTCTTCAGTACCCAATTCATGGATGAGGCTGACATCTTGGCTGATAGGAAAGTATTTCTGTCTAATGGGA AGTTGAAATGTGCAGGATCATCTTTGTTTCTGAAGCGAAAGTGGGGTATTGGATATCATTTAAGTTTACACAGGAATGAAATGTGTGACA CAGAAAAAATCACATCCCTTATTAAGCAGCACATTCCTGATGCCAAGTTAACAACAGAAAGTGAAGAAAAACTTGTATATAGTTTGCCTT TGGAAAAAACGAACAAATTTCCAGATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATGCTGTTTCAGTGACAT CTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAGATTTTGACATTGGGAAACAAGAGAAAATACATGTGA CAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTAGTGCAGCTCTCTGGA GACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTTGTTACTAGTACTTGGAA TTGCTTTTATCCCCATCATTCTAGAGAAGATAATGTATAAAGTAACTCGTGAAACTCATTGTTGGGAGTTTTCACCCAGTATGTATTTCC TTTCTCTGGAACAAATCCCGAAGACGCCTCTTACCAGCCTGTTAATCGTTAATAATACAGGATCAAATATTGAAGACCTCGTGCATTCAC TGAAGTGTCAGGATATAGTTTTGGAAATAGATGACTTTAGAAACAGAAATGGCTCAGATGATCCCTCCTACAATGGAGCCATCATAGTGT CTGGTGACCAGAAGGATTACAGATTTTCTGTTGCGTGTAATACCAAGAAATTGAATTGTTTTCCTGTTCTTATGGGAATTGTTAGCAATG CCCTTATGGGAATTTTTAACTTCACGGAGCTTATTCAAATGGAGAGCACTTCATTTTCTCGTGATGACATAGTGCTGGATCTTGGTTTTA TAGATGGGTCCATATTTTTGTTGTTGATCACAAACTGCGTTTCTCCTTTTATCGGCATGAGCAGCATCAGCGATTATAAAAAAAATGTTC AATCCCAGTTATGGATTTCAGGCCTCTGGCCTTCAGCATACTGGTGTGGACAGGCTCTGGTGGACATTCCATTATACTTCTTGATTCTCT TTTCAATACATTTAATTTACTACTTCATATTTCTGGGATTCCAGCTTTCATGGGAACTCATGTTTGTTTTGGTGGTATGCATAATTGGTT GTGCAGTTTCTCTTATATTCCTCACATATGTGCTTTCATTCATCTTTCGCAAGTGGAGAAAAAATAATGGCTTTTGGTCTTTTGGCTTTT TTATTATCTTAATATGTGTATCCACAATTATGGTATCAACTCAATATGAAAAACTCAACTTAATTTTGTGCATGATTTTCATACCTTCCT TCACTTTGCTGGGGTATGTCATGTTATTGATCCAGCTCGACTTTATGAGAAACTTGGACAGTCTGGACAATAGAATAAATGAAGTCAATA AAACCATTCTTTTAACAACCTTAATACCATACCTTCAGAGTGTTATTTTCCTTTTTGTCATAAGGTGTCTGGAAATGAAGTATGGAAATG AAATAATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGGAGTAGAGAAACTCATCCCAATCCGGAAGAGCCCGAAGAAGAAGATGAAG ATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTGCTCCAAACTTGGAGGAGGAACCAGTCATAACTGCAAGCTGTTTACACA AGGAATATTATGAGACAAAGAAAAGTTGCTTTTCAACAAGAAAGAAGAAAATAGCCATCAGAAATGTTTCCTTTTGTGTTAAAAAAGGTG AAGTTTTGGGATTACTAGGACACAATGGAGCTGGTAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAAAGCCAACTGCAGGAGTGG TGGTGTTACAAGGCAGCAGAGCATCAGTAAGGCAACAGCATGACAACAGCCTCAAGTTCTTGGGGTACTGCCCTCAGGAGAACTCACTGT GGCCCAAGCTTACAATGAAAGAGCACTTGGAGTTGTATGCAGCTGTGAAAGGACTGGGCAAAGAAGATGCTGCTCTCAGTATTTCACGAT TGGTGGAAGCTCTTAAGCTCCAGGAACAACTTAAGGCTCCTGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGCTGTGCTTTGTGCTGA GCATCCTGGGGAACCCATCAGTGGTGCTTCTAGATGAGCCGTTCACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTGGCAGATACTTC AGGCTACCGTTAAAAACAAGGAGAGGGGCACCCTCTTGACCACCCATTACATGTCAGAGGCTGAGGCTGTGTGTGACCGTATGGCCATGA TGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACATCTGAAAAACAAGTTTGGTAGAGATTATTTACTAGAAATAAAAATGAAAG AACCTACCCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATTCCTCTTTAATGGCGT ATAAGTTACCTGTGGAGGATGTCCACCCTCTATCTCGGGCCTTTTTCAAGTTAGAGGCGATGAAACAGACCTTCAACCTGGAGGAATACA GCCTCTCTCAGGCTACCTTGGAGCAGGTATTCTTAGAACTCTGTAAAGAGCAGGAGCTGGGAAATGTTGATGATAAAATTGATACAACAG TTGAATGGAAACTTCTCCCACAGGAAGACCCTTAAAATGAAGAACCTCCTAACATTCAATTTTAGGTCCTACTACATTGTTAGTTTCCAT AATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAACATTTAATAAACATTCAATAATGATTACAGTTTTCATTTTTAAAA ATTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGTAGACAAAATTAACAAAATCAGACATGTTATTCATCCCCAACATGGGTCT ATTTTGTGCTTAAAAATAATTTAAAAATCATACAATATTAGGTTGGTTATCGGTTATTATCAATAAAGCTAACACTGAGAACATTTTACA AATAAAAATATGAGGTTTTTAGCCTGAACTTCAAATGTATCAGCTATTTTTAAACATTATTTACTCGGATTCTAATTTAATGTGACATTG ACTATAAGAAGGTCTGATAAACTGATGAAATGGCACAGCATAACATTTAATTATAATGACATTCTGATTATAAAATAAATGCATGTGAAT TTTAGTACATATTGAAGTTATATGGAAGAAGATAGCCATAATCTGTAAGAAAGTACCGCAGTTAATATTTTCTTTAGCCAACTTATATTC AATGTATTTTTTATGGATCCTTTTTCAAAGGTAGTATCAGTAGGCATAGTCATTTTCTGTATCTTTTCACCTCACAGTTCATGAACATTT CCCATGTCATTATAGCACTTTTGTGTTATATAATTGCTGCATTAATGTTATAGCTGTATTGATGTAATACCAGAGTTGTTACGTTCGGGT >In-frame_TRIT1_ENST00000316891_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_4290nt GCAGACTGCCATAAGATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTT GTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGAC TCCATGCAGAATCAGAAATGTTATAAAAGAATATAATGGAAAGACTGGAAAAGTAGAAGCATTGCAAGGCATATTTTTTGACATATATGA AGGACAGATCACTGCAATACTTGGGCATAATGGAGCTGGTAAATCAACACTGCTAAACATTCTTAGTGGATTGTCTGTTTCTACAGAAGG TAAAAAGAATTATAATGGAATTAGACATGCAAAGCATTCAAGACATTATTGCTAAAAAATTAAGTGGTGGGCAGAAGAGAAAACTAACAC TAGGGATTGCCATCTTAGGAGATCCTCAGGTTTTGCTGCTAGATGAACCAACTGCTGGATTGGATCCCTTTTCAAGACACCGAGTGTGGA GCCTCCTGAAGGAGCATAAAGTAGACCGACTTATCCTCTTCAGTACCCAATTCATGGATGAGGCTGACATCTTGGCTGATAGGAAAGTAT TTCTGTCTAATGGGAAGTTGAAATGTGCAGGATCATCTTTGTTTCTGAAGCGAAAGTGGGGTATTGGATATCATTTAAGTTTACACAGGA ATGAAATGTGTGACACAGAAAAAATCACATCCCTTATTAAGCAGCACATTCCTGATGCCAAGTTAACAACAGAAAGTGAAGAAAAACTTG TATATAGTTTGCCTTTGGAAAAAACGAACAAATTTCCAGATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATG CTGTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAGATTTTGACATTGGGAAACAAG AGAAAATACATGTGACAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTA GTGCAGCTCTCTGGAGACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTTGT TACTAGTACTTGGAATTGCTTTTATCCCCATCATTCTAGAGAAGATAATGTATAAAGTAACTCGTGAAACTCATTGTTGGGAGTTTTCAC CCAGTATGTATTTCCTTTCTCTGGAACAAATCCCGAAGACGCCTCTTACCAGCCTGTTAATCGTTAATAATACAGGATCAAATATTGAAG ACCTCGTGCATTCACTGAAGTGTCAGGATATAGTTTTGGAAATAGATGACTTTAGAAACAGAAATGGCTCAGATGATCCCTCCTACAATG GAGCCATCATAGTGTCTGGTGACCAGAAGGATTACAGATTTTCTGTTGCGTGTAATACCAAGAAATTGAATTGTTTTCCTGTTCTTATGG GAATTGTTAGCAATGCCCTTATGGGAATTTTTAACTTCACGGAGCTTATTCAAATGGAGAGCACTTCATTTTCTCGTGATGACATAGTGC TGGATCTTGGTTTTATAGATGGGTCCATATTTTTGTTGTTGATCACAAACTGCGTTTCTCCTTTTATCGGCATGAGCAGCATCAGCGATT ATAAAAAAAATGTTCAATCCCAGTTATGGATTTCAGGCCTCTGGCCTTCAGCATACTGGTGTGGACAGGCTCTGGTGGACATTCCATTAT ACTTCTTGATTCTCTTTTCAATACATTTAATTTACTACTTCATATTTCTGGGATTCCAGCTTTCATGGGAACTCATGTTTGTTTTGGTGG TATGCATAATTGGTTGTGCAGTTTCTCTTATATTCCTCACATATGTGCTTTCATTCATCTTTCGCAAGTGGAGAAAAAATAATGGCTTTT GGTCTTTTGGCTTTTTTATTATCTTAATATGTGTATCCACAATTATGGTATCAACTCAATATGAAAAACTCAACTTAATTTTGTGCATGA TTTTCATACCTTCCTTCACTTTGCTGGGGTATGTCATGTTATTGATCCAGCTCGACTTTATGAGAAACTTGGACAGTCTGGACAATAGAA TAAATGAAGTCAATAAAACCATTCTTTTAACAACCTTAATACCATACCTTCAGAGTGTTATTTTCCTTTTTGTCATAAGGTGTCTGGAAA TGAAGTATGGAAATGAAATAATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGGAGTAGAGAAACTCATCCCAATCCGGAAGAGCCCG AAGAAGAAGATGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTGCTCCAAACTTGGAGGAGGAACCAGTCATAACTG CAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAAGTTGCTTTTCAACAAGAAAGAAGAAAATAGCCATCAGAAATGTTTCCTTTT GTGTTAAAAAAGGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGTAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAAAGC CAACTGCAGGAGTGGTGGTGTTACAAGGCAGCAGAGCATCAGTAAGGCAACAGCATGACAACAGCCTCAAGTTCTTGGGGTACTGCCCTC AGGAGAACTCACTGTGGCCCAAGCTTACAATGAAAGAGCACTTGGAGTTGTATGCAGCTGTGAAAGGACTGGGCAAAGAAGATGCTGCTC TCAGTATTTCACGATTGGTGGAAGCTCTTAAGCTCCAGGAACAACTTAAGGCTCCTGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGC TGTGCTTTGTGCTGAGCATCCTGGGGAACCCATCAGTGGTGCTTCTAGATGAGCCGTTCACCGGGATGGACCCCGAGGGGCAGCAGCAAA TGTGGCAGATACTTCAGGCTACCGTTAAAAACAAGGAGAGGGGCACCCTCTTGACCACCCATTACATGTCAGAGGCTGAGGCTGTGTGTG ACCGTATGGCCATGATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACATCTGAAAAACAAGTTTGGTAGAGATTATTTACTAG AAATAAAAATGAAAGAACCTACCCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATT CCTCTTTAATGGCGTATAAGTTACCTGTGGAGGATGTCCACCCTCTATCTCGGGCCTTTTTCAAGTTAGAGGCGATGAAACAGACCTTCA ACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTATTCTTAGAACTCTGTAAAGAGCAGGAGCTGGGAAATGTTGATGATA AAATTGATACAACAGTTGAATGGAAACTTCTCCCACAGGAAGACCCTTAAAATGAAGAACCTCCTAACATTCAATTTTAGGTCCTACTAC ATTGTTAGTTTCCATAATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAACATTTAATAAACATTCAATAATGATTACAG TTTTCATTTTTAAAAATTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGTAGACAAAATTAACAAAATCAGACATGTTATTCAT CCCCAACATGGGTCTATTTTGTGCTTAAAAATAATTTAAAAATCATACAATATTAGGTTGGTTATCGGTTATTATCAATAAAGCTAACAC TGAGAACATTTTACAAATAAAAATATGAGGTTTTTAGCCTGAACTTCAAATGTATCAGCTATTTTTAAACATTATTTACTCGGATTCTAA TTTAATGTGACATTGACTATAAGAAGGTCTGATAAACTGATGAAATGGCACAGCATAACATTTAATTATAATGACATTCTGATTATAAAA TAAATGCATGTGAATTTTAGTACATATTGAAGTTATATGGAAGAAGATAGCCATAATCTGTAAGAAAGTACCGCAGTTAATATTTTCTTT AGCCAACTTATATTCAATGTATTTTTTATGGATCCTTTTTCAAAGGTAGTATCAGTAGGCATAGTCATTTTCTGTATCTTTTCACCTCAC AGTTCATGAACATTTCCCATGTCATTATAGCACTTTTGTGTTATATAATTGCTGCATTAATGTTATAGCTGTATTGATGTAATACCAGAG >In-frame_TRIT1_ENST00000372818_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_4290nt GCAGACTGCCATAAGATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTT GTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGAC TCCATGCAGAATCAGAAATGTTATAAAAGAATATAATGGAAAGACTGGAAAAGTAGAAGCATTGCAAGGCATATTTTTTGACATATATGA AGGACAGATCACTGCAATACTTGGGCATAATGGAGCTGGTAAATCAACACTGCTAAACATTCTTAGTGGATTGTCTGTTTCTACAGAAGG TAAAAAGAATTATAATGGAATTAGACATGCAAAGCATTCAAGACATTATTGCTAAAAAATTAAGTGGTGGGCAGAAGAGAAAACTAACAC TAGGGATTGCCATCTTAGGAGATCCTCAGGTTTTGCTGCTAGATGAACCAACTGCTGGATTGGATCCCTTTTCAAGACACCGAGTGTGGA GCCTCCTGAAGGAGCATAAAGTAGACCGACTTATCCTCTTCAGTACCCAATTCATGGATGAGGCTGACATCTTGGCTGATAGGAAAGTAT TTCTGTCTAATGGGAAGTTGAAATGTGCAGGATCATCTTTGTTTCTGAAGCGAAAGTGGGGTATTGGATATCATTTAAGTTTACACAGGA ATGAAATGTGTGACACAGAAAAAATCACATCCCTTATTAAGCAGCACATTCCTGATGCCAAGTTAACAACAGAAAGTGAAGAAAAACTTG TATATAGTTTGCCTTTGGAAAAAACGAACAAATTTCCAGATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATG CTGTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAGATTTTGACATTGGGAAACAAG AGAAAATACATGTGACAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTA GTGCAGCTCTCTGGAGACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTTGT TACTAGTACTTGGAATTGCTTTTATCCCCATCATTCTAGAGAAGATAATGTATAAAGTAACTCGTGAAACTCATTGTTGGGAGTTTTCAC CCAGTATGTATTTCCTTTCTCTGGAACAAATCCCGAAGACGCCTCTTACCAGCCTGTTAATCGTTAATAATACAGGATCAAATATTGAAG ACCTCGTGCATTCACTGAAGTGTCAGGATATAGTTTTGGAAATAGATGACTTTAGAAACAGAAATGGCTCAGATGATCCCTCCTACAATG GAGCCATCATAGTGTCTGGTGACCAGAAGGATTACAGATTTTCTGTTGCGTGTAATACCAAGAAATTGAATTGTTTTCCTGTTCTTATGG GAATTGTTAGCAATGCCCTTATGGGAATTTTTAACTTCACGGAGCTTATTCAAATGGAGAGCACTTCATTTTCTCGTGATGACATAGTGC TGGATCTTGGTTTTATAGATGGGTCCATATTTTTGTTGTTGATCACAAACTGCGTTTCTCCTTTTATCGGCATGAGCAGCATCAGCGATT ATAAAAAAAATGTTCAATCCCAGTTATGGATTTCAGGCCTCTGGCCTTCAGCATACTGGTGTGGACAGGCTCTGGTGGACATTCCATTAT ACTTCTTGATTCTCTTTTCAATACATTTAATTTACTACTTCATATTTCTGGGATTCCAGCTTTCATGGGAACTCATGTTTGTTTTGGTGG TATGCATAATTGGTTGTGCAGTTTCTCTTATATTCCTCACATATGTGCTTTCATTCATCTTTCGCAAGTGGAGAAAAAATAATGGCTTTT GGTCTTTTGGCTTTTTTATTATCTTAATATGTGTATCCACAATTATGGTATCAACTCAATATGAAAAACTCAACTTAATTTTGTGCATGA TTTTCATACCTTCCTTCACTTTGCTGGGGTATGTCATGTTATTGATCCAGCTCGACTTTATGAGAAACTTGGACAGTCTGGACAATAGAA TAAATGAAGTCAATAAAACCATTCTTTTAACAACCTTAATACCATACCTTCAGAGTGTTATTTTCCTTTTTGTCATAAGGTGTCTGGAAA TGAAGTATGGAAATGAAATAATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGGAGTAGAGAAACTCATCCCAATCCGGAAGAGCCCG AAGAAGAAGATGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTGCTCCAAACTTGGAGGAGGAACCAGTCATAACTG CAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAAGTTGCTTTTCAACAAGAAAGAAGAAAATAGCCATCAGAAATGTTTCCTTTT GTGTTAAAAAAGGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGTAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAAAGC CAACTGCAGGAGTGGTGGTGTTACAAGGCAGCAGAGCATCAGTAAGGCAACAGCATGACAACAGCCTCAAGTTCTTGGGGTACTGCCCTC AGGAGAACTCACTGTGGCCCAAGCTTACAATGAAAGAGCACTTGGAGTTGTATGCAGCTGTGAAAGGACTGGGCAAAGAAGATGCTGCTC TCAGTATTTCACGATTGGTGGAAGCTCTTAAGCTCCAGGAACAACTTAAGGCTCCTGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGC TGTGCTTTGTGCTGAGCATCCTGGGGAACCCATCAGTGGTGCTTCTAGATGAGCCGTTCACCGGGATGGACCCCGAGGGGCAGCAGCAAA TGTGGCAGATACTTCAGGCTACCGTTAAAAACAAGGAGAGGGGCACCCTCTTGACCACCCATTACATGTCAGAGGCTGAGGCTGTGTGTG ACCGTATGGCCATGATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACATCTGAAAAACAAGTTTGGTAGAGATTATTTACTAG AAATAAAAATGAAAGAACCTACCCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATT CCTCTTTAATGGCGTATAAGTTACCTGTGGAGGATGTCCACCCTCTATCTCGGGCCTTTTTCAAGTTAGAGGCGATGAAACAGACCTTCA ACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTATTCTTAGAACTCTGTAAAGAGCAGGAGCTGGGAAATGTTGATGATA AAATTGATACAACAGTTGAATGGAAACTTCTCCCACAGGAAGACCCTTAAAATGAAGAACCTCCTAACATTCAATTTTAGGTCCTACTAC ATTGTTAGTTTCCATAATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAACATTTAATAAACATTCAATAATGATTACAG TTTTCATTTTTAAAAATTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGTAGACAAAATTAACAAAATCAGACATGTTATTCAT CCCCAACATGGGTCTATTTTGTGCTTAAAAATAATTTAAAAATCATACAATATTAGGTTGGTTATCGGTTATTATCAATAAAGCTAACAC TGAGAACATTTTACAAATAAAAATATGAGGTTTTTAGCCTGAACTTCAAATGTATCAGCTATTTTTAAACATTATTTACTCGGATTCTAA TTTAATGTGACATTGACTATAAGAAGGTCTGATAAACTGATGAAATGGCACAGCATAACATTTAATTATAATGACATTCTGATTATAAAA TAAATGCATGTGAATTTTAGTACATATTGAAGTTATATGGAAGAAGATAGCCATAATCTGTAAGAAAGTACCGCAGTTAATATTTTCTTT AGCCAACTTATATTCAATGTATTTTTTATGGATCCTTTTTCAAAGGTAGTATCAGTAGGCATAGTCATTTTCTGTATCTTTTCACCTCAC AGTTCATGAACATTTCCCATGTCATTATAGCACTTTTGTGTTATATAATTGCTGCATTAATGTTATAGCTGTATTGATGTAATACCAGAG >In-frame_TRIT1_ENST00000544981_chr1_40348990_-_ABCA10_ENST00000416101_chr17_67193263_-_4288nt AGACTGCCATAAGATGGCGTCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGT AGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTC CATGCAGAATCAGAAATGTTATAAAAGAATATAATGGAAAGACTGGAAAAGTAGAAGCATTGCAAGGCATATTTTTTGACATATATGAAG GACAGATCACTGCAATACTTGGGCATAATGGAGCTGGTAAATCAACACTGCTAAACATTCTTAGTGGATTGTCTGTTTCTACAGAAGGTA AAAAGAATTATAATGGAATTAGACATGCAAAGCATTCAAGACATTATTGCTAAAAAATTAAGTGGTGGGCAGAAGAGAAAACTAACACTA GGGATTGCCATCTTAGGAGATCCTCAGGTTTTGCTGCTAGATGAACCAACTGCTGGATTGGATCCCTTTTCAAGACACCGAGTGTGGAGC CTCCTGAAGGAGCATAAAGTAGACCGACTTATCCTCTTCAGTACCCAATTCATGGATGAGGCTGACATCTTGGCTGATAGGAAAGTATTT CTGTCTAATGGGAAGTTGAAATGTGCAGGATCATCTTTGTTTCTGAAGCGAAAGTGGGGTATTGGATATCATTTAAGTTTACACAGGAAT GAAATGTGTGACACAGAAAAAATCACATCCCTTATTAAGCAGCACATTCCTGATGCCAAGTTAACAACAGAAAGTGAAGAAAAACTTGTA TATAGTTTGCCTTTGGAAAAAACGAACAAATTTCCAGATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATGCT GTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAGATTTTGACATTGGGAAACAAGAG AAAATACATGTGACAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTAGT GCAGCTCTCTGGAGACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTTGTTA CTAGTACTTGGAATTGCTTTTATCCCCATCATTCTAGAGAAGATAATGTATAAAGTAACTCGTGAAACTCATTGTTGGGAGTTTTCACCC AGTATGTATTTCCTTTCTCTGGAACAAATCCCGAAGACGCCTCTTACCAGCCTGTTAATCGTTAATAATACAGGATCAAATATTGAAGAC CTCGTGCATTCACTGAAGTGTCAGGATATAGTTTTGGAAATAGATGACTTTAGAAACAGAAATGGCTCAGATGATCCCTCCTACAATGGA GCCATCATAGTGTCTGGTGACCAGAAGGATTACAGATTTTCTGTTGCGTGTAATACCAAGAAATTGAATTGTTTTCCTGTTCTTATGGGA ATTGTTAGCAATGCCCTTATGGGAATTTTTAACTTCACGGAGCTTATTCAAATGGAGAGCACTTCATTTTCTCGTGATGACATAGTGCTG GATCTTGGTTTTATAGATGGGTCCATATTTTTGTTGTTGATCACAAACTGCGTTTCTCCTTTTATCGGCATGAGCAGCATCAGCGATTAT AAAAAAAATGTTCAATCCCAGTTATGGATTTCAGGCCTCTGGCCTTCAGCATACTGGTGTGGACAGGCTCTGGTGGACATTCCATTATAC TTCTTGATTCTCTTTTCAATACATTTAATTTACTACTTCATATTTCTGGGATTCCAGCTTTCATGGGAACTCATGTTTGTTTTGGTGGTA TGCATAATTGGTTGTGCAGTTTCTCTTATATTCCTCACATATGTGCTTTCATTCATCTTTCGCAAGTGGAGAAAAAATAATGGCTTTTGG TCTTTTGGCTTTTTTATTATCTTAATATGTGTATCCACAATTATGGTATCAACTCAATATGAAAAACTCAACTTAATTTTGTGCATGATT TTCATACCTTCCTTCACTTTGCTGGGGTATGTCATGTTATTGATCCAGCTCGACTTTATGAGAAACTTGGACAGTCTGGACAATAGAATA AATGAAGTCAATAAAACCATTCTTTTAACAACCTTAATACCATACCTTCAGAGTGTTATTTTCCTTTTTGTCATAAGGTGTCTGGAAATG AAGTATGGAAATGAAATAATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGGAGTAGAGAAACTCATCCCAATCCGGAAGAGCCCGAA GAAGAAGATGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTGCTCCAAACTTGGAGGAGGAACCAGTCATAACTGCA AGCTGTTTACACAAGGAATATTATGAGACAAAGAAAAGTTGCTTTTCAACAAGAAAGAAGAAAATAGCCATCAGAAATGTTTCCTTTTGT GTTAAAAAAGGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGTAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAAAGCCA ACTGCAGGAGTGGTGGTGTTACAAGGCAGCAGAGCATCAGTAAGGCAACAGCATGACAACAGCCTCAAGTTCTTGGGGTACTGCCCTCAG GAGAACTCACTGTGGCCCAAGCTTACAATGAAAGAGCACTTGGAGTTGTATGCAGCTGTGAAAGGACTGGGCAAAGAAGATGCTGCTCTC AGTATTTCACGATTGGTGGAAGCTCTTAAGCTCCAGGAACAACTTAAGGCTCCTGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGCTG TGCTTTGTGCTGAGCATCCTGGGGAACCCATCAGTGGTGCTTCTAGATGAGCCGTTCACCGGGATGGACCCCGAGGGGCAGCAGCAAATG TGGCAGATACTTCAGGCTACCGTTAAAAACAAGGAGAGGGGCACCCTCTTGACCACCCATTACATGTCAGAGGCTGAGGCTGTGTGTGAC CGTATGGCCATGATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACATCTGAAAAACAAGTTTGGTAGAGATTATTTACTAGAA ATAAAAATGAAAGAACCTACCCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATTCC TCTTTAATGGCGTATAAGTTACCTGTGGAGGATGTCCACCCTCTATCTCGGGCCTTTTTCAAGTTAGAGGCGATGAAACAGACCTTCAAC CTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTATTCTTAGAACTCTGTAAAGAGCAGGAGCTGGGAAATGTTGATGATAAA ATTGATACAACAGTTGAATGGAAACTTCTCCCACAGGAAGACCCTTAAAATGAAGAACCTCCTAACATTCAATTTTAGGTCCTACTACAT TGTTAGTTTCCATAATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAACATTTAATAAACATTCAATAATGATTACAGTT TTCATTTTTAAAAATTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGTAGACAAAATTAACAAAATCAGACATGTTATTCATCC CCAACATGGGTCTATTTTGTGCTTAAAAATAATTTAAAAATCATACAATATTAGGTTGGTTATCGGTTATTATCAATAAAGCTAACACTG AGAACATTTTACAAATAAAAATATGAGGTTTTTAGCCTGAACTTCAAATGTATCAGCTATTTTTAAACATTATTTACTCGGATTCTAATT TAATGTGACATTGACTATAAGAAGGTCTGATAAACTGATGAAATGGCACAGCATAACATTTAATTATAATGACATTCTGATTATAAAATA AATGCATGTGAATTTTAGTACATATTGAAGTTATATGGAAGAAGATAGCCATAATCTGTAAGAAAGTACCGCAGTTAATATTTTCTTTAG CCAACTTATATTCAATGTATTTTTTATGGATCCTTTTTCAAAGGTAGTATCAGTAGGCATAGTCATTTTCTGTATCTTTTCACCTCACAG TTCATGAACATTTCCCATGTCATTATAGCACTTTTGTGTTATATAATTGCTGCATTAATGTTATAGCTGTATTGATGTAATACCAGAGTT |
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FusionGenePPI for TRIT1_ABCA10 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TRIT1 | HGH1, SMYD3, SHE, ANKS1A | ABCA10 | CUL4A, COPS5 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000316891 | - | 1 | 11 | 55_58 | 58 | 468 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000372818 | - | 1 | 10 | 55_58 | 58 | 442 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000441669 | - | 1 | 9 | 55_58 | 58 | 386 | substrate tRNA |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000316891 | - | 1 | 11 | 233_255 | 58 | 468 | isopentenylpyrophosphate transferase |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000372818 | - | 1 | 10 | 233_255 | 58 | 442 | isopentenylpyrophosphate transferase |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000441669 | - | 1 | 9 | 233_255 | 58 | 386 | isopentenylpyrophosphate transferase |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000316891 | - | 1 | 11 | 183_187 | 58 | 468 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000316891 | - | 1 | 11 | 281_283 | 58 | 468 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000316891 | - | 1 | 11 | 313_331 | 58 | 468 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000316891 | - | 1 | 11 | 323_330 | 58 | 468 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000372818 | - | 1 | 10 | 183_187 | 58 | 442 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000372818 | - | 1 | 10 | 281_283 | 58 | 442 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000372818 | - | 1 | 10 | 313_331 | 58 | 442 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000372818 | - | 1 | 10 | 323_330 | 58 | 442 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000441669 | - | 1 | 9 | 183_187 | 58 | 386 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000441669 | - | 1 | 9 | 281_283 | 58 | 386 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000441669 | - | 1 | 9 | 313_331 | 58 | 386 | substrate tRNA |
Hgene | TRIT1 | chr1:40348990 | chr17:67193263 | ENST00000441669 | - | 1 | 9 | 323_330 | 58 | 386 | substrate tRNA |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TRIT1_ABCA10 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRIT1_ABCA10 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TRIT1 | C0032927 | Precancerous Conditions | 1 | CTD_human |
Tgene | ABCA10 | C0009404 | Colorectal Neoplasms | 1 | CTD_human |