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Fusion gene ID: 39471 |
FusionGeneSummary for TRIM16_TRIM16 |
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Fusion gene information | Fusion gene name: TRIM16_TRIM16 | Fusion gene ID: 39471 | Hgene | Tgene | Gene symbol | TRIM16 | TRIM16 | Gene ID | 10626 | 10626 |
Gene name | tripartite motif containing 16 | tripartite motif containing 16 | |
Synonyms | EBBP | EBBP | |
Cytomap | 17p12 | 17p12 | |
Type of gene | protein-coding | protein-coding | |
Description | tripartite motif-containing protein 16estrogen-responsive B box protein | tripartite motif-containing protein 16estrogen-responsive B box protein | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | O95361 | O95361 | |
Ensembl transtripts involved in fusion gene | ENST00000577886, ENST00000416464, ENST00000578237, ENST00000336708, ENST00000579219, ENST00000581224, | ENST00000577886, ENST00000416464, ENST00000578237, ENST00000336708, ENST00000579219, ENST00000581224, | |
Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 2 X 2 X 2=8 |
# samples | 3 | 2 | |
** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: TRIM16 [Title/Abstract] AND TRIM16 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TRIM16 | GO:0043966 | histone H3 acetylation | 19147277 |
Hgene | TRIM16 | GO:0043967 | histone H4 acetylation | 16636064 |
Hgene | TRIM16 | GO:0045618 | positive regulation of keratinocyte differentiation | 11919186 |
Hgene | TRIM16 | GO:0045893 | positive regulation of transcription, DNA-templated | 16636064|19147277 |
Hgene | TRIM16 | GO:0048386 | positive regulation of retinoic acid receptor signaling pathway | 16636064 |
Hgene | TRIM16 | GO:0060416 | response to growth hormone | 11919186 |
Tgene | TRIM16 | GO:0043966 | histone H3 acetylation | 19147277 |
Tgene | TRIM16 | GO:0043967 | histone H4 acetylation | 16636064 |
Tgene | TRIM16 | GO:0045618 | positive regulation of keratinocyte differentiation | 11919186 |
Tgene | TRIM16 | GO:0045893 | positive regulation of transcription, DNA-templated | 16636064|19147277 |
Tgene | TRIM16 | GO:0048386 | positive regulation of retinoic acid receptor signaling pathway | 16636064 |
Tgene | TRIM16 | GO:0060416 | response to growth hormone | 11919186 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF798533 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000577886 | ENST00000577886 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000577886 | ENST00000416464 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000577886 | ENST00000578237 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000577886 | ENST00000336708 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000577886 | ENST00000579219 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000577886 | ENST00000581224 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000416464 | ENST00000577886 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000416464 | ENST00000416464 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000416464 | ENST00000578237 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000416464 | ENST00000336708 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000416464 | ENST00000579219 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000416464 | ENST00000581224 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000578237 | ENST00000577886 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000578237 | ENST00000416464 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000578237 | ENST00000578237 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000578237 | ENST00000336708 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000578237 | ENST00000579219 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000578237 | ENST00000581224 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000336708 | ENST00000577886 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000336708 | ENST00000416464 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000336708 | ENST00000578237 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000336708 | ENST00000336708 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000336708 | ENST00000579219 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000336708 | ENST00000581224 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000579219 | ENST00000577886 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000579219 | ENST00000416464 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000579219 | ENST00000578237 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000579219 | ENST00000336708 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000579219 | ENST00000579219 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000579219 | ENST00000581224 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000581224 | ENST00000577886 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000581224 | ENST00000416464 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000581224 | ENST00000578237 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000581224 | ENST00000336708 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000581224 | ENST00000579219 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
intron-intron | ENST00000581224 | ENST00000581224 | TRIM16 | chr17 | 15556116 | + | TRIM16 | chr17 | 15556199 | - |
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FusionProtFeatures for TRIM16_TRIM16 |
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Hgene | Tgene |
TRIM16 | TRIM16 |
May play a role in the regulation of keratinocytedifferentiation. | May play a role in the regulation of keratinocytedifferentiation. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TRIM16_TRIM16 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TRIM16_TRIM16 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TRIM16_TRIM16 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRIM16_TRIM16 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |