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Fusion gene ID: 39301 |
FusionGeneSummary for TRA2A_THADA |
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Fusion gene information | Fusion gene name: TRA2A_THADA | Fusion gene ID: 39301 | Hgene | Tgene | Gene symbol | TRA2A | THADA | Gene ID | 29896 | 63892 |
Gene name | transformer 2 alpha homolog | THADA, armadillo repeat containing | |
Synonyms | AWMS1|HSU53209 | ARMC13|GITA | |
Cytomap | 7p15.3 | 2p21 | |
Type of gene | protein-coding | protein-coding | |
Description | transformer-2 protein homolog alphaTRA-2 alphaTRA2-alphaTra2alphahtra-2 alphaputative MAPK activating protein PM24transformer-2 alphatransformer-2 protein homolog A | thyroid adenoma-associated proteindeath receptor-interacting proteingene inducing thyroid adenomas protein | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q13595 | Q6YHU6 | |
Ensembl transtripts involved in fusion gene | ENST00000297071, ENST00000392502, ENST00000538367, ENST00000474586, | ENST00000330266, ENST00000405975, ENST00000415080, ENST00000405006, ENST00000485353, ENST00000402360, ENST00000404790, ENST00000403856, | |
Fusion gene scores | * DoF score | 8 X 7 X 5=280 | 9 X 9 X 7=567 |
# samples | 10 | 10 | |
** MAII score | log2(10/280*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/567*10)=-2.5033487351675 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TRA2A [Title/Abstract] AND THADA [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TRA2A | GO:0000398 | mRNA splicing, via spliceosome | 9546399 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | THCA | TCGA-ET-A3DV-01A | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
TCGA | LD | THCA | TCGA-DE-A2OL-01A | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000297071 | ENST00000330266 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000297071 | ENST00000405975 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000297071 | ENST00000415080 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000297071 | ENST00000405006 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000297071 | ENST00000485353 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000297071 | ENST00000402360 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000297071 | ENST00000404790 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000297071 | ENST00000403856 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000392502 | ENST00000330266 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000392502 | ENST00000405975 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000392502 | ENST00000415080 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000392502 | ENST00000405006 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000392502 | ENST00000485353 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000392502 | ENST00000402360 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000392502 | ENST00000404790 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000392502 | ENST00000403856 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000538367 | ENST00000330266 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000538367 | ENST00000405975 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000538367 | ENST00000415080 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000538367 | ENST00000405006 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000538367 | ENST00000485353 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000538367 | ENST00000402360 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000538367 | ENST00000404790 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000538367 | ENST00000403856 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
intron-intron | ENST00000474586 | ENST00000330266 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
intron-intron | ENST00000474586 | ENST00000405975 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
intron-intron | ENST00000474586 | ENST00000415080 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
intron-intron | ENST00000474586 | ENST00000405006 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
intron-intron | ENST00000474586 | ENST00000485353 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
intron-intron | ENST00000474586 | ENST00000402360 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
intron-intron | ENST00000474586 | ENST00000404790 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
intron-intron | ENST00000474586 | ENST00000403856 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43460021 | - |
5CDS-intron | ENST00000297071 | ENST00000330266 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000297071 | ENST00000405975 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000297071 | ENST00000415080 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000297071 | ENST00000405006 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000297071 | ENST00000485353 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000297071 | ENST00000402360 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000297071 | ENST00000404790 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000297071 | ENST00000403856 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000392502 | ENST00000330266 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000392502 | ENST00000405975 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000392502 | ENST00000415080 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000392502 | ENST00000405006 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000392502 | ENST00000485353 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000392502 | ENST00000402360 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000392502 | ENST00000404790 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000392502 | ENST00000403856 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000538367 | ENST00000330266 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000538367 | ENST00000405975 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000538367 | ENST00000415080 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000538367 | ENST00000405006 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000538367 | ENST00000485353 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000538367 | ENST00000402360 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000538367 | ENST00000404790 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
5CDS-intron | ENST00000538367 | ENST00000403856 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
intron-intron | ENST00000474586 | ENST00000330266 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
intron-intron | ENST00000474586 | ENST00000405975 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
intron-intron | ENST00000474586 | ENST00000415080 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
intron-intron | ENST00000474586 | ENST00000405006 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
intron-intron | ENST00000474586 | ENST00000485353 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
intron-intron | ENST00000474586 | ENST00000402360 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
intron-intron | ENST00000474586 | ENST00000404790 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
intron-intron | ENST00000474586 | ENST00000403856 | TRA2A | chr7 | 23545365 | - | THADA | chr2 | 43560402 | - |
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FusionProtFeatures for TRA2A_THADA |
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Hgene | Tgene |
TRA2A | THADA |
Sequence-specific RNA-binding protein which participatesin the control of pre-mRNA splicing. {ECO:0000269|PubMed:9546399}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TRA2A_THADA |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TRA2A_THADA |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TRA2A | TADA2A, YWHAG, NUDT21, SELENBP1, CRABP1, TNNT1, CDK2AP2, C11orf58, ELAVL1, CUL3, CUL5, COPS5, SRSF10, RBM25, SRSF5, CDC5L, SEPT2, NFIA, NHP2L1, NCSTN, SF3A1, BUD31, SF3B3, PHGDH, S100A9, HNRNPC, HNRNPU, PRPF40A, SF3B6, HNRNPM, SAP18, PRPF6, IK, HP1BP3, SEPT7, SMARCB1, PLEC, BARD1, PAXIP1, MAGOH, EIF4A3, PPP1CC, DHX15, U2SURP, CDK6, LBP, NXF1, YTHDC1, CLK3, SRPK2, OBSL1, EZH2, SUZ12, EED, RNF2, BMI1, ZNF22, LARP7, SRRM1, MRPS9, MRPS26, THRAP3, LUC7L2, LUC7L, ZNF768, PTCD1, PTCD3, SRRM2, C17orf85, ZFR, PABPC4L, PABPC4, RBBP6, ELAVL2, RPL6, MRPS23, MRPS27, TRUB2, MRPS6, RPL26L1, MTERF3, PAIP1, MRPS18B, MRPL32, C10orf2, MRPS10, DAP3, MEPCE, UPF1, PPIG, LARP1, LARP1B, PHAX, MRPS31, MKRN1, MRPS18C, MRPS5, MRPS7, MRPS22, MRPS15, MRPS35, MRPS25, RRP9, NGRN, MRPS2, MOV10, MRPS33, SRRT, PRPF3, MRPS11, PNN, SRP14, GAR1, MRPS24, CASC3, WDR33, CSNK1E, CSNK1D, MRPS14, GAPDHS, ZCCHC3, MKRN2, ZC3H11A, NOA1, TRA2B, ISY1, SRSF8, CLK1, SRSF7, APOBEC3F, HIST1H2AG, SRSF12, CLK2, MRPL34, MRPS21, SNIP1, NTRK1, SRSF3, SRSF6, EWSR1, CNTRL, CDK2, FEN1, U2AF2, SNRNP70, ZC3H18, C11orf57, SNRPN, NCOA5, PABPC1, SYF2, APOBEC3D, NR3C1, FOXA1 | THADA | CUL3, UBA2, AHCYL1, SRXN1, SSSCA1, SEC24A, SEC23A, SULT1A1, NUBP2, STAM, IGBP1, PSAT1, SIN3A, TES, EGFR, USHBP1, CD274, VSIG2, CA14, LYPD3, SCN2B, ALDH3A2, NTRK1, VASN, TMEM206, TNFRSF1A, OPRM1, SIGLECL1, CHRM4, FZD10, ILVBL, EDNRB, NAA10, CCKBR, CD83, APLNR, MLST8, MTOR, XPO6, XPO4 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TRA2A_THADA |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRA2A_THADA |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TRA2A | C0037274 | Dermatologic disorders | 1 | CTD_human |
Hgene | TRA2A | C0311375 | Arsenic Poisoning | 1 | CTD_human |
Tgene | THADA | C0011860 | Diabetes Mellitus, Non-Insulin-Dependent | 1 | CTD_human |