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Fusion gene ID: 39281 |
FusionGeneSummary for TPX2_ACLY |
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Fusion gene information | Fusion gene name: TPX2_ACLY | Fusion gene ID: 39281 | Hgene | Tgene | Gene symbol | TPX2 | ACLY | Gene ID | 22974 | 47 |
Gene name | TPX2, microtubule nucleation factor | ATP citrate lyase | |
Synonyms | C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 | ACL|ATPCL|CLATP | |
Cytomap | 20q11.21 | 17q21.2 | |
Type of gene | protein-coding | protein-coding | |
Description | targeting protein for Xklp2TPX2, microtubule-associated protein homologTPX2, microtubule-associated, homologdifferentially expressed in cancerous and non-cancerous lung cells 2differentially expressed in lung cellshepatocellular carcinoma-associated | ATP-citrate synthaseATP-citrate (pro-S-)-lyasecitrate cleavage enzyme | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q9ULW0 | P53396 | |
Ensembl transtripts involved in fusion gene | ENST00000340513, ENST00000300403, | ENST00000352035, ENST00000590151, ENST00000353196, ENST00000537919, ENST00000393896, ENST00000588779, | |
Fusion gene scores | * DoF score | 14 X 8 X 12=1344 | 6 X 6 X 4=144 |
# samples | 23 | 7 | |
** MAII score | log2(23/1344*10)=-2.54682737183439 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/144*10)=-1.04064198449735 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TPX2 [Title/Abstract] AND ACLY [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TPX2 | GO:0032147 | activation of protein kinase activity | 14580337|19801554 |
Hgene | TPX2 | GO:0090307 | mitotic spindle assembly | 26165940 |
Tgene | ACLY | GO:0006085 | acetyl-CoA biosynthetic process | 1371749 |
Tgene | ACLY | GO:0006101 | citrate metabolic process | 1371749 |
Tgene | ACLY | GO:0006107 | oxaloacetate metabolic process | 1371749 |
Tgene | ACLY | GO:0008610 | lipid biosynthetic process | 23932781 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | STAD | TCGA-BR-8077-01A | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-5UTR | ENST00000340513 | ENST00000352035 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000340513 | ENST00000590151 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000340513 | ENST00000353196 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000340513 | ENST00000537919 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000340513 | ENST00000393896 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-intron | ENST00000340513 | ENST00000588779 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000300403 | ENST00000352035 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000300403 | ENST00000590151 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000300403 | ENST00000353196 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000300403 | ENST00000537919 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-5UTR | ENST00000300403 | ENST00000393896 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
5UTR-intron | ENST00000300403 | ENST00000588779 | TPX2 | chr20 | 30330450 | + | ACLY | chr17 | 40070153 | - |
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FusionProtFeatures for TPX2_ACLY |
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Hgene | Tgene |
TPX2 | ACLY |
Spindle assembly factor required for normal assembly ofmitotic spindles. Required for normal assembly of microtubulesduring apoptosis. Required for chromatin and/or kinetochoredependent microtubule nucleation. Mediates AURKA localization tospindle microtubules (PubMed:18663142, PubMed:19208764). ActivatesAURKA by promoting its autophosphorylation at 'Thr-288' andprotects this residue against dephosphorylation (PubMed:18663142,PubMed:19208764). TPX2 is inactivated upon binding to importin-alpha (PubMed:26165940). At the onset of mitosis, GOLGA2 interactswith importin-alpha, liberating TPX2 from importin-alpha, allowingTPX2 to activates AURKA kinase and stimulates local microtubulenucleation (PubMed:26165940). {ECO:0000269|PubMed:18663142,ECO:0000269|PubMed:19208764, ECO:0000269|PubMed:26165940}. | ATP-citrate synthase is the primary enzyme responsiblefor the synthesis of cytosolic acetyl-CoA in many tissues. Has acentral role in de novo lipid synthesis. In nervous tissue it maybe involved in the biosynthesis of acetylcholine.{ECO:0000269|PubMed:23932781}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TPX2_ACLY |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TPX2_ACLY |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TPX2 | AURKA, FZR1, KPNA1, KPNB1, HMMR, BRCA1, SIAH2, ZNF598, NDUFA7, THUMPD2, DNAJC8, MRPL53, SERPINH1, UBE2S, PPIF, SARNP, TWF1, SCAMP3, CDK6, IKBKB, CHUK, IKBKG, AURKB, LMNA, HDAC9, THAP11, NAP1L1, RPA3, RPA2, RPA1, GOLGA2, MAPK14, GSTM3, HIST1H2BG, AFAP1, SAP130, RBPJ, CDC5L, RNF111 | ACLY | TFE3, IKBKE, PRKAB1, GSK3B, NME2, HGS, TERF1, TERF2, HDAC5, SIRT7, ISG15, CUL3, CUL2, CAND1, SHC1, APP, UBC, FN1, CDKN2A, BAG3, KPNA2, KPNA4, PPP6C, PRMT1, SRRT, MAGED2, MCM2, MCM6, NCL, WWOX, ASB15, TRIM25, STAU1, HUWE1, UBR4, KAT2B, SIRT2, CUL7, OBSL1, CCDC8, SIRT6, CTH, EEF1D, PYGB, CS, HNRNPK, NAPRT, NUP210L, RPE, SDHA, SDHB, STIP1, NTRK1, AHSA1, NUP107, ATF6, CRY1, CRY2, FBXW7, USP13, DERL1, ZNF746, DDIAS, DUSP13, DNM1L, BRCA1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TPX2_ACLY |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TPX2_ACLY |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ACLY | C0018801 | Heart failure | 1 | CTD_human |
Tgene | ACLY | C0028754 | Obesity | 1 | CTD_human |
Tgene | ACLY | C2239176 | Liver carcinoma | 1 | CTD_human |